EMLSAG00000003501, EMLSAG00000003501-686267 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003501
Unique NameEMLSAG00000003501-686267
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003501 vs. C. finmarchicus
Match: gi|592807698|gb|GAXK01146870.1| (TSA: Calanus finmarchicus comp9843403_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.501e+0
Identity = 16/54 (29.63%), Postives = 26/54 (48.15%), Query Frame = 0 
Query:   34 SKIPKNSIFPISSSEMESDVDQVFTSDKITFLTFRGNPFFNISLQTLPLWASIR 87
            + +P+ S+ P++       + +V T   IT   F G P  N    TLP W ++R
Sbjct:   40 TSVPRLSVSPMT------FIGRVSTPSTITLSPFCGTPLANSRKCTLPFWRTVR 183
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BLAST of EMLSAG00000003501 vs. C. finmarchicus
Match: gi|592757660|gb|GAXK01196753.1| (TSA: Calanus finmarchicus comp249658_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.142e+0
Identity = 22/74 (29.73%), Postives = 38/74 (51.35%), Query Frame = 0 
Query:   29 FKNHGSKIPKNSIFPISSSEMESDVDQVFTSDKI-------TFLTFRGNPF---FNISLQTLPLWASIRAFMVW 92
            F + GS IP N  FP+  + + +  DQ+ TS  +         L F+ N F   F  ++QTL  +  ++A+++W
Sbjct: 1080 FHHLGSGIPDNC-FPLGFAGLLAQ-DQLLTSATLPPACSIGKLL*FQANHFSFLFQTNVQTL*YFLKVQAYLIW 1295
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BLAST of EMLSAG00000003501 vs. C. finmarchicus
Match: gi|592757661|gb|GAXK01196752.1| (TSA: Calanus finmarchicus comp249658_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.143e+0
Identity = 22/74 (29.73%), Postives = 38/74 (51.35%), Query Frame = 0 
Query:   29 FKNHGSKIPKNSIFPISSSEMESDVDQVFTSDKI-------TFLTFRGNPF---FNISLQTLPLWASIRAFMVW 92
            F + GS IP N  FP+  + + +  DQ+ TS  +         L F+ N F   F  ++QTL  +  ++A+++W
Sbjct: 1093 FHHLGSGIPDNC-FPLGFAGLLAQ-DQLLTSATLPPACSIGKLL*FQANHFSFLFQTNVQTL*YFLKVQAYLIW 1308
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BLAST of EMLSAG00000003501 vs. C. finmarchicus
Match: gi|592757662|gb|GAXK01196751.1| (TSA: Calanus finmarchicus comp249658_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.153e+0
Identity = 22/74 (29.73%), Postives = 38/74 (51.35%), Query Frame = 0 
Query:   29 FKNHGSKIPKNSIFPISSSEMESDVDQVFTSDKI-------TFLTFRGNPF---FNISLQTLPLWASIRAFMVW 92
            F + GS IP N  FP+  + + +  DQ+ TS  +         L F+ N F   F  ++QTL  +  ++A+++W
Sbjct: 1080 FHHLGSGIPDNC-FPLGFAGLLAQ-DQLLTSATLPPACSIGKLL*FQANHFSFLFQTNVQTL*YFLKVQAYLIW 1295
[Close]
BLAST of EMLSAG00000003501 vs. C. finmarchicus
Match: gi|592757663|gb|GAXK01196750.1| (TSA: Calanus finmarchicus comp249658_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.153e+0
Identity = 22/74 (29.73%), Postives = 38/74 (51.35%), Query Frame = 0 
Query:   29 FKNHGSKIPKNSIFPISSSEMESDVDQVFTSDKI-------TFLTFRGNPF---FNISLQTLPLWASIRAFMVW 92
            F + GS IP N  FP+  + + +  DQ+ TS  +         L F+ N F   F  ++QTL  +  ++A+++W
Sbjct: 1093 FHHLGSGIPDNC-FPLGFAGLLAQ-DQLLTSATLPPACSIGKLL*FQANHFSFLFQTNVQTL*YFLKVQAYLIW 1308
[Close]
BLAST of EMLSAG00000003501 vs. L. salmonis peptides
Match: EMLSAP00000003501 (pep:novel supercontig:LSalAtl2s:LSalAtl2s191:10381:10770:1 gene:EMLSAG00000003501 transcript:EMLSAT00000003501 description:"snap_masked-LSalAtl2s191-processed-gene-0.11")

HSP 1 Score: 246.514 bits (628), Expect = 5.339e-85
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 
Query:    1 MKFGGAAHINNLLHVRNQFQVKSNGEPEFKNHGSKIPKNSIFPISSSEMESDVDQVFTSDKITFLTFRGNPFFNISLQTLPLWASIRAFMVWEEVQPFMPRNDHGIRVGESHWLNKQVT 119
            MKFGGAAHINNLLHVRNQFQVKSNGEPEFKNHGSKIPKNSIFPISSSEMESDVDQVFTSDKITFLTFRGNPFFNISLQTLPLWASIRAFMVWEEVQPFMPRNDHGIRVGESHWLNKQVT
Sbjct:    1 MKFGGAAHINNLLHVRNQFQVKSNGEPEFKNHGSKIPKNSIFPISSSEMESDVDQVFTSDKITFLTFRGNPFFNISLQTLPLWASIRAFMVWEEVQPFMPRNDHGIRVGESHWLNKQVT 119
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003501 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003501 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592807698|gb|GAXK01146870.1|3.501e+029.63TSA: Calanus finmarchicus comp9843403_c0_seq1 tran... [more]
gi|592757660|gb|GAXK01196753.1|4.142e+029.73TSA: Calanus finmarchicus comp249658_c1_seq4 trans... [more]
gi|592757661|gb|GAXK01196752.1|4.143e+029.73TSA: Calanus finmarchicus comp249658_c1_seq3 trans... [more]
gi|592757662|gb|GAXK01196751.1|4.153e+029.73TSA: Calanus finmarchicus comp249658_c1_seq2 trans... [more]
gi|592757663|gb|GAXK01196750.1|4.153e+029.73TSA: Calanus finmarchicus comp249658_c1_seq1 trans... [more]
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BLAST of EMLSAG00000003501 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000035015.339e-85100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s191:10381... [more]
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BLAST of EMLSAG00000003501 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003501 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003501 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003501 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s191supercontigLSalAtl2s191:10381..10770 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s191-processed-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003501 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003501EMLSAT00000003501-699348Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s191:10381..10770+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003501-686267 ID=EMLSAG00000003501-686267|Name=EMLSAG00000003501|organism=Lepeophtheirus salmonis|type=gene|length=390bp|location=Sequence derived from alignment at LSalAtl2s191:10381..10770+ (Lepeophtheirus salmonis)
ATGAAATTTGGAGGCGCTGCTCATATCAATAATCTCCTCCACGTTCGAAA
TCAATTTCAAGTGAAAAGCAATGGTGAACCTGAATTTAAAAATCATGGAT
CTAAAATACCCAAAAATTCTATATTCCCTATTTCATCCTCTGAAATGGAG
TCCGACGTGGATCAAGTTTTTACTTCGGACAAGATCACTTTTTTGACTTT
TCGCGGAAACCCATTTTTTAATATATCACTGCAAACACTTCGTATGTTCT
TATTCGTTATACATTTAATAGCCTTATGGGCTTCTATTCGCGCGTTTATG
GTTTGGGAGGAGGTCCAACCCTTTATGCCAAGGAATGATCATGGAATACG
TGTGGGAGAGAGTCACTGGCTCAATAAACAAGTTACTTAG
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