EMLSAG00000003517, EMLSAG00000003517-686283 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003517
Unique NameEMLSAG00000003517-686283
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003517 vs. L. salmonis peptides
Match: EMLSAP00000003517 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1920:3147:4973:1 gene:EMLSAG00000003517 transcript:EMLSAT00000003517 description:"maker-LSalAtl2s1920-augustus-gene-0.2")

HSP 1 Score: 345.125 bits (884), Expect = 2.738e-122
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MIFTYLNILRRYICLTLELLKFNNTFATHVVFIFFVCMFYINTSPIFQKVFTRIKLTMTCTYHYLLLLSVLVVMIHAITDPAGYWEEDITTRHNFVPLLKSVGVPEWLANFCNTGQQSVQNITRTDTGYNITGKQAKGDNFTTIITKIRGPPEHFHFFLEFDNXHVKL 168
            MIFTYLNILRRYICLTLELLKFNNTFATHVVFIFFVCMFYINTSPIFQKVFTRIKLTMTCTYHYLLLLSVLVVMIHAITDPAGYWEEDITTRHNFVPLLKSVGVPEWLANFCNTGQQSVQNITRTDTGYNITGKQAKGDNFTTIITKIRGPPEHFHFFLEFDNXHVKL
Sbjct:    1 MIFTYLNILRRYICLTLELLKFNNTFATHVVFIFFVCMFYINTSPIFQKVFTRIKLTMTCTYHYLLLLSVLVVMIHAITDPAGYWEEDITTRHNFVPLLKSVGVPEWLANFCNTGQQSVQNITRTDTGYNITGKQAKGDNFTTIITKIRGPPEHFHFFLEFDNXHVKL 168
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003517 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003517 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003517 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000035172.738e-122100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1920:3147... [more]
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BLAST of EMLSAG00000003517 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003517 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003517 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003517 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1920supercontigLSalAtl2s1920:3147..4973 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1920-augustus-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003517 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003517EMLSAT00000003517-699364Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1920:3147..4973+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003517-686283 ID=EMLSAG00000003517-686283|Name=EMLSAG00000003517|organism=Lepeophtheirus salmonis|type=gene|length=1827bp|location=Sequence derived from alignment at LSalAtl2s1920:3147..4973+ (Lepeophtheirus salmonis)
AAAAATATGGTTTCTAACATGTGGTGGGATTATTTAAATATATGGATTGA
ACCATAAAATTGAGGATGACTACTACAGAGCTTATAAAAATTAAGCCTTC
CATTTGATTCCTTATTTAATTCGAGTTAAATCAGTCTTATTTGTTCTCTA
TTGTACTACGAAACCTGAAGAGAATTTTTTTTTTTTTTAATTATTTACAT
AAATTTGAATTTTGAAAAGAGGAAGGGAAAATGATGAAATTGATGATGGT
CAATGAGCAAGTAGTGATATACGTTGAACAAGAATAAGACAAGCGACAGG
ATTTATTTATATTTCCCAGGGAAAAAACAATATCCCCGGATTGGGATTCC
ATCTTTTATCACTATTTATGATGTAATATGACGTCATTTCTTCTCTATAA
ATACCATAACTCGTTCATATCCGTCTACCATAAATCACATGTCATTACTC
CTCACCAGTGCCAACGGCCCACTATCGAAACCTCCCTCAATAGTTCTGCA
CAAAAACTACTAACTAGTGTAGAAATATTAATCGTGTGACGTCACTAACC
ATCCCTCTTCAAAGTTGGATTGAAATGTTCTTTTCCAAAGAGGGCAATAT
CAAGTTGTTTTCTCGCAGGCAATAAGTTATAAAACAGAAAGGGGCATACT
TGACTTAAACAAATAATTGTAACACATCTTATAAAGCATTTAAATAAACG
GGAAAAAACGAAAATATACATTATGTATATTGACTAGAGTGGATGTGACT
AACTTAGAGGGGTCAGTCCAACTTAAATTCAATAACCAAAAATTCTAAAT
AAGTAATATTCATATTTTGTAGAAAACTACTCACTATATTTTGAAGATAA
ATGATTACTATATACTAAAATATGATTTTTACATATTTAAATATTTTACG
AAGGTATATTTGCCTTACGTTAGAGTTATTGAAATTCAATAACACTTTTG
CTACACATGTGGTTTTCATATTTTTCGTATGTATGTTTTATATAAATACG
TCTCCTATCTTCCAAAAAGTATTCACTCGAATAAAACTAACTATGACATG
CACATATCACTATCTCCTCTTGCTTTCTGTTCTGGTTGTAATGATTCAGT
AAGTAGTTATACTTTTTTTGATTTTTAAAGTTCCTTATTGTAATATTTTT
TAATGTTTAGTGCAATCACTGATCCGGCTGGATATTGGGAAGAAGACATA
ACGACTCGTCATAATTTTGTACCACTTCTCAAGAGTGTTGGTGGGTATAA
AACGTACTTTACTATTTTCTGAAGTAACTTTTATCTCATTTAGGTGTTCC
CGAATGGTTGGCAAATTTTTGTAATACGGGACAGCAGTCAGTACAAAACA
TCACAAGAACTGATACAGGATATAATATAACTGGAAAACGTGAGTGTGAA
ATTCTCTGATAGTTATAAGCTATTATATAAATATCTATGTATTTCCATTT
TTTTAGAGGCCAAAGGAGATAACTTTACAACTATCATTACCAAAATAAGG
GGTCCACCAGAACATTTTCATTTCTTTTTAGAGTTTGACAATNNTCACGT
CAAACTCTAAAGTTAAGATAAATGAAACCACAGGACAGGAGACTCTAGTT
TACTACTTTTATCGAAATAACTCAAGTACTCCTTTTGTTAAAACACGGAG
GACTTATTCCAATGGAAACAGGATGAAGTACACTTTTGTCAACACCAACA
ACCTTGACAAGGCTTATAGTTTTTTTCAACGTTCCACTACTACAACCGAA
TTAAATTAATTGAACTATAACTAAAAATATTTTATGAATATGAAAATTAA
TAGAGCATTGCTTATCTTTTGATATTG
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