EMLSAG00000003518, EMLSAG00000003518-686284 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003518
Unique NameEMLSAG00000003518-686284
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003518 vs. C. finmarchicus
Match: gi|592884215|gb|GAXK01074160.1| (TSA: Calanus finmarchicus comp123194_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.639e+0
Identity = 12/40 (30.00%), Postives = 20/40 (50.00%), Query Frame = 0 
Query:   35 FRIRSGTVSHEELYGDSQGADAPLGHHYKGFEYEGNTLAK 74
             R +   V ++EL  D+        H YKGF+++G   +K
Sbjct:  730 LRPQKSEVEYKELMKDNYEEIPSTAHSYKGFKFKGEDFSK 849
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BLAST of EMLSAG00000003518 vs. C. finmarchicus
Match: gi|592884216|gb|GAXK01074159.1| (TSA: Calanus finmarchicus comp123194_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.694e+0
Identity = 12/40 (30.00%), Postives = 20/40 (50.00%), Query Frame = 0 
Query:   35 FRIRSGTVSHEELYGDSQGADAPLGHHYKGFEYEGNTLAK 74
             R +   V ++EL  D+        H YKGF+++G   +K
Sbjct:  730 LRPQKSEVEYKELMKDNYEEIPSTAHSYKGFKFKGEDFSK 849
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BLAST of EMLSAG00000003518 vs. L. salmonis peptides
Match: EMLSAP00000003518 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1921:15745:16339:-1 gene:EMLSAG00000003518 transcript:EMLSAT00000003518 description:"snap_masked-LSalAtl2s1921-processed-gene-0.0")

HSP 1 Score: 169.859 bits (429), Expect = 5.768e-56
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 
Query:    1 MGPAKIIVNDSLAIILLSLYALRELELPRMSDFFFRIRSGTVSHEELYGDSQGADAPLGHHYKGFEYEGNTLAKPPRVQVIY 82
            MGPAKIIVNDSLAIILLSLYALRELELPRMSDFFFRIRSGTVSHEELYGDSQGADAPLGHHYKGFEYEGNTLAKPPRVQVIY
Sbjct:    1 MGPAKIIVNDSLAIILLSLYALRELELPRMSDFFFRIRSGTVSHEELYGDSQGADAPLGHHYKGFEYEGNTLAKPPRVQVIY 82
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003518 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003518 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592884215|gb|GAXK01074160.1|5.639e+030.00TSA: Calanus finmarchicus comp123194_c0_seq2 trans... [more]
gi|592884216|gb|GAXK01074159.1|5.694e+030.00TSA: Calanus finmarchicus comp123194_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003518 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000035185.768e-56100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1921:1574... [more]
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BLAST of EMLSAG00000003518 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003518 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003518 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003518 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1921supercontigLSalAtl2s1921:15745..16339 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1921-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003518 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003518EMLSAT00000003518-699365Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1921:15745..16339-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003518-686284 ID=EMLSAG00000003518-686284|Name=EMLSAG00000003518|organism=Lepeophtheirus salmonis|type=gene|length=595bp|location=Sequence derived from alignment at LSalAtl2s1921:15745..16339- (Lepeophtheirus salmonis)
ATGGGTCCTGCTAAGATCATTGTAAATGATAGCCTAGCAATTATACTTCT
AAGCCTTTACGCATTGAGGGAATTGGAACTTCCTCGGATGTCTGATTTCT
TCTTTCGTATTCGGAGTGGAACCGTAAGTCATGAGGAACTCTATGGAGAT
TCTCAGGGGGCAGATGCTCCTTTGGGGCATCAGTGATCCCTATGACAAAG
GACTATAAGAAAATCCTTTGCTGCCCAGCGTGTACCTGGACTCAGGTGTA
GGTTCGCTTGAGTCATGTKTCATTCCAGTGTGACGTCCAAGGGCTTTAAC
TCGTGGATAAGGACCATAGAGACCAAANGTTAANGTAAATGATGTCTTGG
GCAAGGTTGTAAGTATCATTAATTAAGTATTATTTAATTTATCYTTTTAA
TTTTGCAGTTACAAAGTAATGATAATCTCGAGTCTTTATAGAGTCATATT
AAAGATCTCAATTTGGCTCATATATGTCTATAGAAATTTAAATAATTATG
ATTAATATTAAAAATTCATACTATTATTTTCACAGGGTTTTGAATATGAG
GGAAATACTCTAGCTAAGCCACCTCGTGTACAAGTGATTTATTAG
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