EMLSAG00000003594, EMLSAG00000003594-686360 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003594
Unique NameEMLSAG00000003594-686360
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003594 vs. C. finmarchicus
Match: gi|592792049|gb|GAXK01162519.1| (TSA: Calanus finmarchicus comp632401_c2_seq7 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.164e-1
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:   63 RVYFGNKKIKYFHAGRNASSY 83
            R +FGNKKI+YF  GR  SS+
Sbjct:  218 RGFFGNKKIEYFPDGRKDSSF 280
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BLAST of EMLSAG00000003594 vs. C. finmarchicus
Match: gi|592792050|gb|GAXK01162518.1| (TSA: Calanus finmarchicus comp632401_c2_seq6 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.164e-1
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:   63 RVYFGNKKIKYFHAGRNASSY 83
            R +FGNKKI+YF  GR  SS+
Sbjct:  218 RGFFGNKKIEYFPDGRKDSSF 280
[Close]
BLAST of EMLSAG00000003594 vs. C. finmarchicus
Match: gi|592792051|gb|GAXK01162517.1| (TSA: Calanus finmarchicus comp632401_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.164e-1
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:   63 RVYFGNKKIKYFHAGRNASSY 83
            R +FGNKKI+YF  GR  SS+
Sbjct:  218 RGFFGNKKIEYFPDGRKDSSF 280
[Close]
BLAST of EMLSAG00000003594 vs. L. salmonis peptides
Match: EMLSAP00000003594 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1976:8540:14233:1 gene:EMLSAG00000003594 transcript:EMLSAT00000003594 description:"augustus_masked-LSalAtl2s1976-processed-gene-0.0")

HSP 1 Score: 160.614 bits (405), Expect = 2.251e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 
Query:    1 MKSTMITMKSSMEREGQKEEIIGIFYLRNRISVKRKKRRRIMKRLLIRKRMMKRIHSKQLLKRVYFGNKKIKYFHAGRNASSY 83
            MKSTMITMKSSMEREGQKEEIIGIFYLRNRISVKRKKRRRIMKRLLIRKRMMKRIHSKQLLKRVYFGNKKIKYFHAGRNASSY
Sbjct:    1 MKSTMITMKSSMEREGQKEEIIGIFYLRNRISVKRKKRRRIMKRLLIRKRMMKRIHSKQLLKRVYFGNKKIKYFHAGRNASSY 83
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003594 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003594 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592792049|gb|GAXK01162519.1|7.164e-161.90TSA: Calanus finmarchicus comp632401_c2_seq7 trans... [more]
gi|592792050|gb|GAXK01162518.1|7.164e-161.90TSA: Calanus finmarchicus comp632401_c2_seq6 trans... [more]
gi|592792051|gb|GAXK01162517.1|7.164e-161.90TSA: Calanus finmarchicus comp632401_c2_seq5 trans... [more]
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BLAST of EMLSAG00000003594 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000035942.251e-52100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1976:8540... [more]
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BLAST of EMLSAG00000003594 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003594 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003594 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003594 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1976supercontigLSalAtl2s1976:8540..14233 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1976-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003594 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003594EMLSAT00000003594-699441Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1976:8540..14233+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003594-686360 ID=EMLSAG00000003594-686360|Name=EMLSAG00000003594|organism=Lepeophtheirus salmonis|type=gene|length=5694bp|location=Sequence derived from alignment at LSalAtl2s1976:8540..14233+ (Lepeophtheirus salmonis)
CTCTTTAGCAATGAAGTCTACGATGATTACGATGAAGAGTTCCATGGAGA
GAGAAGGGCAGAAGGAGGAGATCATCGGGATATTCTATTTGAGAAACCGG
ATTTCCGTGAAGAGGAAGAAGAGGAGGAGGATCATGAAGAGGCTCTTGAT
AAGGAAGAGGATGATGAAGAGGATCCATTCAAAACAACTCTTAAAAAGGG
TCTACTTTGGCAACAAAAAGATAAAATATTTTCACGCTGGAAGGAACGCT
TCTTCATATTAACCAAAGACTACCTTCAATGCTTTAAAAAAGAAACTAAT
TCACGCTTGAGTGAAATGGGAGGTTTTATCTTTAAACTTAAACTCTCTGA
GGTAAGTTAGATTATACATATTTCTCTCTTTTCCAGCTTATCCTCTTGCT
ATTTGATGGTTTTGACAAACTTGTTTCATTTTATTTATATATCTTTTTAT
ATTCATCTTGTCCCATAAAATGGAGGATGATAGGAACTATTAAATTTCCA
TAATTTCTAAGACATGGAAGCCTATTAATAAACAGCAAATCCTCGGATTA
CGAGGCTTTTGAATACAAAGTTGTACCATTAACAGTCTTGCCGTTCTAGC
ACTTTCGGTTTTTGATCTGTAAGAATCCGACCCGACAAAGTAGAACTGAG
GTATCGGTTCTTCTACTTTTGTTCCTACATAGAATATATAGAGAAAATAC
TATATATATTATAAAAAAGAAATTAACTTAAGTCAGAAAAATGACTGAGT
TTTCTTTTGTGCAATTGCAGGTTTTTCCTATGATTTTTTTACATAGCCAG
GGTGATACAGTTGTATCTGAGTTCCAATTAGGCAAGGGCTTCTTATGGCT
CTGTAAAAGGGGTTTTGGGGGTCAGACGGTGTAAATAAAGGAAGGAAGGA
AGGGGGGAGGTAGTTTACACATCCAGATCCGCTACTGAGCTTCTCAGGGC
CTTATAATTTGATAACTATAATATTTCTTAACACCCTGGGTTTCCAAACT
TAACTATGCCAAGGCCCCCCTACACTCATACATTTTTAGCTGAGGCCCCC
TTTGTAAGATGCATGTGTAGCCTCAAAGCAATCCTCAAATCTACATCTTT
CTGCGTACCCCTATCCTCCCCTCGCAGTCCCCACTTTGAAAAACATTGTC
TTAAACACCCTTAATTTCCAGCGCCCCTGTTGGAACTTGGGGCACTATGC
AGTCTGTGTATAAGGTAGCTGCAGTCCTATTTGTTTCTAATATAATTTCC
TGGGTGCGAATTTTATCCTTGTTTTATGTGCCTGTTTCCAAAGTAAGACT
GTATTAAAAAGAACTAAGACCGACTCTGTTGAAATAAAAGAACGTAGATC
CGGACCGATAGAACTCCTGAACTTGAACCGGGCACAACTTTGCTTCTACA
CTATTGTATTTGAAATATGAGAGTGTAGTTGATAACTAGTTGTACTCAGT
CTTTCTAAAATGGTCATTCATCTATCTTAATAGTAAAGCATTGGGTGCCT
GGTATTTCTGCCTTAAAGCTATTTTGCCTCAAGGATATTTCGCTTTAATA
TATATGAGGTTTATACGTCGTTATTTAAAGTACATTAAATGTTTGTTTCT
GTTCGAATAATTATGGAATTTTGCTCTTGCCTCATATTATCCTTGTTTGT
CAATCCATGAGTCTTTACAAATTTGAATAATACATCATTTCTCATGATAA
TTACTAGCGGAAATGTGATTAGCAATTCTCCTATTCGAATAGCGTTTATT
ATACCCCCCCCCCCCCCCATTTAATACGTTTTATAGTAATTCACATTACA
TATTTTGATTAAAAAAGTCTAAGGAAACGTGGATTTTAACCAAAAAATAA
CGTTACTCCTTTGTGAGTTGAAGAATTCTTCTTAGAAGTACAACATCTTT
CTTAAATTCATCCCTGGTTGGGAATTCAAATGCTTTAGGGATCTGGAAAT
CAAGAAATAGTTTTGCAACTTTCTATCCCTCGTTTAAAAGATTTATGATT
GATCGTTTGAATGTGATGTGGAAGGTTCTAATTTAAATTAAATTTTGAAT
TAATACTAATTTCAGGGATCTAATTTAATCCTTTAATAATAATAAATGAG
TATCTACCATTGAGCAATGTAATTATTTTCACTTAACCTAATTTAATTTA
TAATTGAAAGACAAACATTTTAATTAATATATCAATGGATGAAGAACACG
TGCTACTTGAGAAATTAATTTTCCCCAACATGTGACGTTCACGTTGCGAT
ATAAACACACTTTAAGAAAAACCATTTCACCTACTATTAACCAACAAACA
AATGAACTAATTTATTCATCATATTTGTACATAAATGTATTCAATTGAAA
CTAATTATTTTACCAAACATTATGACTTATTGACAGGTATGCTAATAATA
CCACAGTTAAAGCCACTCTTATTATTTTATATAATACTAGCATTGGTAAG
AGTTTTTAGCCCTGGATGAACAAACAAAAGGGCAGACAAACTTGGCTTTA
ATAAATATTTAGAATATATAAATGTACACCCTTTTCTTTTTTTTAAATAT
GACGGGCTTAGCTTTACACGCTCSTTGCTTCATTATTATTTTTAAATCAT
GTAGTCGCGCAGTTCTAAATTATTAAGAGCACATTCAAAAATGTTTCTCG
GCAGACAAATTTAGCTTTAGTAATATGGATTTAATCCTTCTCTTGACGCA
GATATTCCTCGTGATGACCCGAGGACTCGTTCCTATTCTAATTATTGTGT
TTAGTGTTCATCCAATGCTCTTAGAAGAGTCAACTGATTGTCTGGGAGAC
TAATTTTGACTCTTCTTTTTTTCTTTTTTTTTTTGTATTTTTAGCAAACA
AACATACCTAAATTTAGAAATGTAATTTACTGGCTAATTACCCAGTTTTA
AATTATTACATTTACGGACAAAGATATACAAAAGATCGTTTCCGAGTACG
TAACATCGTGTCATATGTACGGGATTCTCTAGAAGCTTTCCTTAATTAAA
TCACTTGACCCCTTCTATAAAAAATTAAATTGTACAAATTTATTGTCAGT
TGTCGATTTTTCTTCCTCTTGTGAATGGTATGGACGTTGATTAATTGAAT
TCAAATTAGATAGAGCAATTTTCTCCTCTAGCCGCCTGATTTATGTATTG
TACAAATATGATATATGCCACACATTTAACTTTATATGATGTTTTTTTNG
GGGAATTACTATGTATTTTTACATTTTTGCAAAACAYTATATTAGAAATT
GTATTTTTGAAATCTTTAAAAAAAAAAATATAATATTTGAAATTTTTTTC
CAAAAAAATTTCTTTTTTGCAAACAACTGTGGGTTTTTGAAGTTTTTTTG
ATGGGTTTTTGAATTTTTTTCACAAAAAATTAATTTTTTGTGGATTTTTG
GAAAAAAAATTAAATATCTTATAGTAGATTTGAGATGTTTTTCAAAAAAA
AAAATATTTTTGGAATTTTTTTTCCAAAAAAATTCCAAAGACAAATCCCC
TCATAAATATAATCTTGTGTATGCCCGTTATAGCAAAATAGTACATTTCA
ACTATTATTTAAAGCATTAAAGAATCGGAATAACATCGGCATTATAATTG
TTTGTTTTGGAAACGGCTCATCACTGGAAGTAATGCTCTCAATCCGGTTT
TAGTATAACGAGTACTTTTTCACAGCTAGGAATGTTGCTCGTACTTTTAA
CTACTATTTTATTTAATGTGTATGATATACATAAATGAAGCAGTCCTACA
AAATAGATACTCGTATTTGTATGGTATGTTTTATAGTCATGCTCATATTA
GAAGGAAAGAAATTGCATTTTCCTGAGCTCCTTCACCATCTCCACAACCA
ATAAAATTTAATATTTATAACTCATTCTCTTCTTGTTTTCCTCTCAAAGA
GAAGCAGCAATCTTTACAAAAATAAAACAAAGAACTATATAATAGTTGAA
AATTTCTTTCCATATACATAATTATTAGTGTTGCCACTGGGTCCAAGATA
TATTTTGGTTCGGTTCGGTCTTGAGGGATTTTCCTTTTTCAAAGAAAGAA
AAAAGAAAACATTTTCCTTTTTGTGGGATATATAAATCAAAATGGGTGTT
GTGTCAGGTTTTGTTCTATAAGAAAGTRCCGTGGGCCAGTCAGTCACACT
TATGGGTCCTTACAGAAGGTAAATGGATCCCTCGTGACGTCATTCACGGT
CTTTTTTAGTCATTCAATTACCATATATATATATATATATATATAATTAG
TGATGTGAAAAATTGTCTAATTCCTCCTGTGTATACTTTTAAAAGAAAAT
TAAATGTTAGCTAGTTAGATATCTGCTGACAGAGATCATAAGACTGCACC
CGGCTCACTTCTACGTTTGCATTGTTGAATTAGTGAGAAATAATGAATAA
TCTCACAGGTTACCAGCTTATACATAGTTATTATATGTATGATTTCGACA
ATTTTCACATCTCTATATATAATACGAGCGTCGATAAACAGACGCGCCTT
GCTTTAATAATATAGAAGAAAACATCCCAACAAATTCTCAGTCGTACTCA
TCATTTTTCATGAGCGCACTCACACGTAGTTACTTAATACTTAGATATTA
TCTTCTCAAGAATTAAAAAAAATGGGACGTATAATGCAGTGTTTGGAATT
ATTCGAACTCCCCGTAAAGTGTGGTATATTTCCCTCATATTGCGGTTATT
TTTATGGTATATATATGGTATGATAATAACCTATAAAAAAACTATACATT
GAGGTAAACAAGGATTTTTGTATTTCTTGGGGAGGTCGTTCATACTATTA
TGCTAATATATATTCAGATAATAAAAATTTATAATTTTGCATCGAGGGAG
TGTCCTATAAGTATTTGATTTGATACATAGACTTGAAACTTTTGGTTATT
ACTTAGCATACCCACTTGCAATAAAAAAGGTTCCTGAATAGAAGTTGGTT
AGCTTCCGATTATTTAAATTAATCAGTATTGAAATGACCTAATTAAGAAT
CAAGTAAATATTCCAGTAAGATTAAATTTTACAAGTATCTTGTGTGGCAT
AATTAATTTTAAACGATTTAGGATGAATAAAATATTATATTCATCCTAAC
CATTCTAAAAATAGTAAACAGTATACTTTGAAAAATAATTTATCGCATTG
TACAGGTTTTAGTACTAAAAAGGTCCCCGTACAACGTGGATATCATATAT
TCCGGATGTTTCTTGCTCCCAAAAATCCTGATAAGTGAGTACCCCTAAGT
AAATGACATGATGAGCCAGGGAATGTAAAGTACTCCCGGGCTGAGGTTTA
GCTATGCGCGTTCGTGGGTAACCTCATCTATAGTTATAGTCATTTTTTTT
ATAATGTATTATGTAATTTCCCCTTCATTTATTTTTTTTAATGAATTCGT
TGGTGAAAATGAGTTATTCAAAATTATTTTTTGTGGAGTGCTTAAAATAT
TCTCCCTTACGTCCATGAATTAGGGCTATAATGTGAAAATGATTTTAACA
CTTCCTTCCTTTATATATATCTTTGATCACAAATATTAATAAGGATTTAT
TTTTCCACCTTTTATTATAGGTTGAATTGGTTGAACTCGTGGATAAGAAA
GGATATTTAACAGTCTGCCTCTCTTTGCCCAAAGATGGAAAGGTTCTACT
TCGGAAAAATGAAGGGATTCGGGATTGGTTTTCACTTTTAAAGG
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