EMLSAG00000003596, EMLSAG00000003596-686362 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003596
Unique NameEMLSAG00000003596-686362
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003596 vs. L. salmonis peptides
Match: EMLSAP00000003596 (pep:novel supercontig:LSalAtl2s:LSalAtl2s197:117778:119426:1 gene:EMLSAG00000003596 transcript:EMLSAT00000003596 description:"snap_masked-LSalAtl2s197-processed-gene-1.10")

HSP 1 Score: 296.204 bits (757), Expect = 7.784e-104
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 
Query:    1 MCNAMPCFKLRSRCFKIRTCTCVRASEWSSFVPKVSSESFDEEEGNYGSMEEEVRRRSKKTNIKNGPSGQCHHYYTTSVQKADSSSSFISYLKFKTFYLEEDSSGDKRFVNEGVIDMSSPSKSMYHHHSSMIQNPSFSSVPDR 143
            MCNAMPCFKLRSRCFKIRTCTCVRASEWSSFVPKVSSESFDEEEGNYGSMEEEVRRRSKKTNIKNGPSGQCHHYYTTSVQKADSSSSFISYLKFKTFYLEEDSSGDKRFVNEGVIDMSSPSKSMYHHHSSMIQNPSFSSVPDR
Sbjct:    1 MCNAMPCFKLRSRCFKIRTCTCVRASEWSSFVPKVSSESFDEEEGNYGSMEEEVRRRSKKTNIKNGPSGQCHHYYTTSVQKADSSSSFISYLKFKTFYLEEDSSGDKRFVNEGVIDMSSPSKSMYHHHSSMIQNPSFSSVPDR 143
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003596 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003596 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003596 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000035967.784e-104100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s197:11777... [more]
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BLAST of EMLSAG00000003596 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003596 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003596 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003596 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s197supercontigLSalAtl2s197:117778..119426 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s197-processed-gene-1.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003596 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003596EMLSAT00000003596-699443Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s197:117778..119426+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003596-686362 ID=EMLSAG00000003596-686362|Name=EMLSAG00000003596|organism=Lepeophtheirus salmonis|type=gene|length=1649bp|location=Sequence derived from alignment at LSalAtl2s197:117778..119426+ (Lepeophtheirus salmonis)
ATGTGTAATGCCATGCCTTGTTTCAAACTCCGTTCAAGATGTTTTAAAAT
ACGGACTTGCACATGTGTACGAGCCTCTGAGTGGTCCTCCTTCGTTCCTA
AAGTATCCAGTGAATCTTTTGATGAAGAAGAAGGAAACTATGGTTCCATG
GAGGAAGAAGTAAGGAGGAGGAGTAAGAAGACAAATATCAAGAACGGTCC
TTCTGGTCAATGCCATCATTACTATACCACATCAGTGCAGAAGGCCGACT
CTTCATCTTCTTTCATTTCTTACCTCAAGTTTAAAACATTTTATTTGGAG
GAGGACTCCTCTGGTGGTAGAGCTACTCCTCTTTTTATTTCTCCTTCATC
AAGGGGATGTGAGTCGTCTGCGCGTCCCTATCTTTGAAATGTTCATTACA
CAATATAAATAAATATAACCGGTTTTACTTTTTTGGTTTAAAAAAAAGAA
ACTTTCATTTTATAGTTACATATTTACAATTACGCACTCATAAGCGTCAC
ATCCACCTCAATACTAATACCGAGTCCTTGAACAATTAACCCATAGAGGG
GGAAATATTTGCCCTTTCAATGTTTAGAGAGAGAGAGAGAGAGAAAACAA
AACAGGTTTGACATTGCCCAAAATGGAATGATTTTTGGTTGCCTTTTTGT
TTTTATAGTTGATGAAATAATGATAGTCTGTGATTGCTTGTAATGACTAT
TTTTTATAATAATTATATATATTATGTATCCACCGGCCAATTTTATAATA
AGGGGCGTCATTAGGGGACTACTATTATGWTTWTTTTTRTTTGGTAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAATACATCATACTATGAATATTCTTCAAGGGAGGAGGAGATGTCA
ATGGCCCTACAGTTCCGGCTCCACTTTATGTGTCCAATCAGTTCTTAAGC
AAGCTAGAATGTTTTTCTCCTAAACTCACCAAACATATATATTCATGAAG
TAATAGCAGTACGTTGTTCCCTCTTTGTCATTTAGTCATAATTAAGTTTC
TTTACTTATTTCTATTACCTACAAAATTAAGGATTGGTGTTTTCTTGCAA
TTAAGCTTGCAGCAGATGTTTGTACTGTTTAATATTAGTACATACTATCA
TTAAGTATATTTGACTTTTATATTTTTTGCAAATCAACCTTTTTTACAAA
CGTTTTATATGTACTCGACCAACCAACCAACCAACCAAGCAATGAATAAT
AATCATCTCTTTTTCTCCTTCTTTTTATTACAGATAAACGTTTCGTCAAT
GAGGGTGTTATCGACATGTCGAGTCCTTCAAAGTCCATGTATCATCACCA
TTCATCCATGATACAAAATCCTTCTTTCTCCTCTGTACCTGATAGGTAA
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