EMLSAG00000003788, EMLSAG00000003788-686554 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592772246|gb|GAXK01182322.1| (TSA: Calanus finmarchicus comp1705673_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.8986 bits (102), Expect = 3.780e-4 Identity = 33/117 (28.21%), Postives = 51/117 (43.59%), Query Frame = 0 Query: 106 LNLSCKNNGRIIIKRTFYGRRDSSTCPLPNAGEFGQCSVTKPI--KPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCT---NTLNPK-VFPYKPYNYTMQAEHIIDNNL 216 L+LSC+ I + R +GR +S CP PN + +P K + C C + +S Q FG C + Y+E +Y C + N K V P P ++ E I+ + Sbjct: 152 LSLSCEAGTVIKVIRANFGRLTNSVCPSPNMDKTWSTRCIQPTSFKVVNSLCGGKSSCSVPVSSNQ-FGDPCSDTPKYLELVYQCKTKRSASNEKSVMPSWPMSFESMTEVIMKKQI 499
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592901846|gb|GAXK01056529.1| (TSA: Calanus finmarchicus comp304599_c2_seq2 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 7.571e-4 Identity = 28/93 (30.11%), Postives = 40/93 (43.01%), Query Frame = 0 Query: 108 LSCKNNGRIIIKRTFYGRRDSSTCP---LPNAGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKN----VVPYVETIYTCTNTLN 193 LSCK++ + I + F+GR CP LP EF CS+ + + C C + S +E G N PYV+ +TC N Sbjct: 1176 LSCKSSNLVRITQAFFGRHHGEECPVPWLPAEAEF-SCSLHSALSDLQSYCEGRRVCTVSTSTKEEGGPFSSNPCILQQPYVKLDFTCVQADN 1451
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592901847|gb|GAXK01056528.1| (TSA: Calanus finmarchicus comp304599_c2_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 7.600e-4 Identity = 28/93 (30.11%), Postives = 40/93 (43.01%), Query Frame = 0 Query: 108 LSCKNNGRIIIKRTFYGRRDSSTCP---LPNAGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKN----VVPYVETIYTCTNTLN 193 LSCK++ + I + F+GR CP LP EF CS+ + + C C + S +E G N PYV+ +TC N Sbjct: 1194 LSCKSSNLVRITQAFFGRHHGEECPVPWLPAEAEF-SCSLHSALSDLQSYCEGRRVCTVSTSTKEEGGPFSSNPCILQQPYVKLDFTCVQADN 1469
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592851505|gb|GAXK01106039.1| (TSA: Calanus finmarchicus comp2309444_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.743 bits (99), Expect = 7.697e-4 Identity = 34/111 (30.63%), Postives = 48/111 (43.24%), Query Frame = 0 Query: 106 LNLSCKNNGRIIIKRTFYGRRDSSTCPLPNAGEFGQCSVTKP--IKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNT-LNPKVFPYKPYNYTMQAEHIID 213 L+LSC+ I I R +GR +S CP N +P ++ + C C + +S Q FG C + Y+E IY C L PK P P + M E + D Sbjct: 139 LSLSCERGTVINIIRANFGRFSNSVCPSSNKDTTWSTRCIQPTTLRVLDTLCGGKTSCSVPVSSAQ-FGDPCPSTPKYLELIYNCKREDLAPKNIPNLPP-WLMSLESMTD 465
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592937488|gb|GAXK01021065.1| (TSA: Calanus finmarchicus comp1441081_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.817 bits (94), Expect = 4.295e-3 Identity = 29/101 (28.71%), Postives = 46/101 (45.54%), Query Frame = 0 Query: 92 YTIKDV-ACSSPPQDLNLSCKNNGRIIIKRTFYGRRDSSTCPLPN---AGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTC 188 Y+ K V AC ++LSCK I + R YGR +S CP+ + + + C ++ + C C + +S Q FG C Y++ +YTC Sbjct: 706 YSKKQVFACDGSA--VSLSCKQGTVIQVIRANYGRFSNSVCPVKSMDISNTWSTCIQPTTLRVMTTLCGGRRSCSVPVSSSQ-FGDPCPGTSKYLQLLYTC 999
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592873638|gb|GAXK01083924.1| (TSA: Calanus finmarchicus comp176527_c1_seq5 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 1.486e-2 Identity = 27/107 (25.23%), Postives = 44/107 (41.12%), Query Frame = 0 Query: 106 LNLSCKNNGRIIIKRTFYGRRDSSTCPLPNAGEFG-QCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNTL--------NPKVFPYKPYN 203 LN++C + I R YGR + C + ++ C + ++ I +C+ A C + + FG C YVE Y+C + + P FP P N Sbjct: 72 LNITCGEGLHLNIIRANYGRFSIAICNMHGNTDWSVNCMSPRTLRVIRARCQGAAACHVPVDSTI-FGDPCPGTYKYVEVHYSCEHEITTSTTARPRPPWFPESPPN 389
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592873647|gb|GAXK01083915.1| (TSA: Calanus finmarchicus comp176527_c0_seq3 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 1.486e-2 Identity = 27/107 (25.23%), Postives = 44/107 (41.12%), Query Frame = 0 Query: 106 LNLSCKNNGRIIIKRTFYGRRDSSTCPLPNAGEFG-QCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNTL--------NPKVFPYKPYN 203 LN++C + I R YGR + C + ++ C + ++ I +C+ A C + + FG C YVE Y+C + + P FP P N Sbjct: 487 LNITCGEGLHLNIIRANYGRFSIAICNMHGNTDWSVNCMSPRTLRVIRARCQGAAACHVPVDSTI-FGDPCPGTYKYVEVHYSCEHEITTSTTARPRPPWFPESPPN 804
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592867280|gb|GAXK01090282.1| (TSA: Calanus finmarchicus comp1322130_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 1.509e-2 Identity = 28/99 (28.28%), Postives = 43/99 (43.43%), Query Frame = 0 Query: 106 LNLSCKNNGRIIIKRTFYGRRDSSTCPLPN--AGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNTLNPKV-FPYKP 201 L+LSC+ I I R +GR S CP N + +C + ++ + C C + ++ Q FG C Y+E +YTC P + P P Sbjct: 130 LSLSCEAGTVINIIRANFGRFSKSVCPSYNKDSSWSTRCILPSSLRVVTNLCGGKRSCSVPVTSSQ-FGDPCPETPKYLELVYTCKTKSKPTIKIPILP 423
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592834858|gb|GAXK01122686.1| (TSA: Calanus finmarchicus comp1209514_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 7.961e-2 Identity = 27/111 (24.32%), Postives = 46/111 (41.44%), Query Frame = 0 Query: 92 YTIKDVACSSPPQDLNLSCKNNGRIIIKRTFYGR--RDSSTCP---------LPNAGEFGQCSVTKPIKPILEKCRNAVECLIKISE---LQEFGQVCKNVVPYVETIYTC 188 +T + AC ++L ++C + +I I+ YGR D CP + +C + + I+ + E+C C I S ++ C V YVE +Y C Sbjct: 1405 HTRQSAACDG--EELKMACPSGTKISIQLVQYGRLIPDDEVCPSNIRYPGTSISKGENEEKCLILEAIRTVEERCHGRESCTITASPESLAKDLRDPCPQVRKYVEVLYKC 1731
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Match: gi|592873646|gb|GAXK01083916.1| (TSA: Calanus finmarchicus comp176527_c0_seq4 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 2.822e-1 Identity = 24/95 (25.26%), Postives = 38/95 (40.00%), Query Frame = 0 Query: 118 IKRTFYGRRDSSTCPLPNAGEFG-QCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNTL--------NPKVFPYKPYN 203 I R YGR + C + ++ C + ++ I +C+ A C + + FG C YVE Y+C + + P FP P N Sbjct: 13 IIRANYGRFSIAICNMHGNTDWSVNCMSPRTLRVIRARCQGAAACHVPVDSTI-FGDPCPGTYKYVEVHYSCEHEITTSTTARPRPPWFPESPPN 294
BLAST of EMLSAG00000003788 vs. L. salmonis peptides
Match: EMLSAP00000003788 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2052:11675:16438:1 gene:EMLSAG00000003788 transcript:EMLSAT00000003788 description:"snap_masked-LSalAtl2s2052-processed-gene-0.2") HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0 Query: 1 MTSPSFILEHDDCTYLFISCMAHDTYGNYYVNRELCQTHYHDCLHSLELNTVTNKYGSITVITPKEPISHISYDKYNKYYYVTHDRRHLSTYTIKDVACSSPPQDLNLSCKNNGRIIIKRTFYGRRDSSTCPLPNAGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNTLNPKVFPYKPYNYTMQAEHIIDNNLSTVYVTAFSTAPYIIFQHEKRLNFTGVKIYAMEMEKSVKFTDIFFVLTNNPFTFFDGKDFVSCTRLNPKELRFNCPSDTAYEYNFIFGASRGYLAIMDITFQIVSF 322 MTSPSFILEHDDCTYLFISCMAHDTYGNYYVNRELCQTHYHDCLHSLELNTVTNKYGSITVITPKEPISHISYDKYNKYYYVTHDRRHLSTYTIKDVACSSPPQDLNLSCKNNGRIIIKRTFYGRRDSSTCPLPNAGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNTLNPKVFPYKPYNYTMQAEHIIDNNLSTVYVTAFSTAPYIIFQHEKRLNFTGVKIYAMEMEKSVKFTDIFFVLTNNPFTFFDGKDFVSCTRLNPKELRFNCPSDTAYEYNFIFGASRGYLAIMDITFQIVSF Sbjct: 1 MTSPSFILEHDDCTYLFISCMAHDTYGNYYVNRELCQTHYHDCLHSLELNTVTNKYGSITVITPKEPISHISYDKYNKYYYVTHDRRHLSTYTIKDVACSSPPQDLNLSCKNNGRIIIKRTFYGRRDSSTCPLPNAGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNTLNPKVFPYKPYNYTMQAEHIIDNNLSTVYVTAFSTAPYIIFQHEKRLNFTGVKIYAMEMEKSVKFTDIFFVLTNNPFTFFDGKDFVSCTRLNPKELRFNCPSDTAYEYNFIFGASRGYLAIMDITFQIVSF 322
BLAST of EMLSAG00000003788 vs. L. salmonis peptides
Match: EMLSAP00000000847 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1142:20434:22839:-1 gene:EMLSAG00000000847 transcript:EMLSAT00000000847 description:"maker-LSalAtl2s1142-snap-gene-0.19") HSP 1 Score: 104.76 bits (260), Expect = 4.662e-25 Identity = 88/324 (27.16%), Postives = 135/324 (41.67%), Query Frame = 0 Query: 8 LEHDDCTYLFISCMAHDTYGNYYVNRELCQTHYHDCLHSLELNTVTNKYGSITVITPKE------PISHISYDKYNKYYYVTHDRRHLSTYTIKDVACSSPPQDLNLSCKNNGRIIIKRTFYGRRDSSTCP--LPNAGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTCTNTLNPKVFPYKPYNYTMQAEHIIDNNLSTVYVTAFSTAPYIIFQHEKRLNFTGVKIYAMEMEKSVKFTDIFFVLTN----NPFTFFDGKDFVSCTRLNPKELRFNCPSDTAYEYNFIFGASRGYLAIMDITFQI 319 E DC Y + SC TYG + +N +C Y CL + N + +T+ P E IS I + +N + H+R CS + NLSC G I I F+GR + + CP LP+ C V + + ++C +C I EL + CK + PY+E YTC+ P V YN + ++D ++ST Y T T P+I V ++A + V + I LTN N F++ + +C + P +L F C S T I+ G ++I ++T I Sbjct: 36 FEFADCLYRYFSCSDDHTYGKWPMNSRICYRDYQFCLAEAKWNXGVXSHXGVTITYPLENPTYNTEISTIGHYLFN---FAFHER-----------ICSYKKE--NLSCGPFGNIHIIFVFFGRVEGNDCPTILPSEFSHKSCEVENAFEYVYKRCDGKKKCSISPKELDP--KHCKGMYPYLEMKYTCSGFERPSVSSSGGYNSSFNFGAVVDQDISTSYSTNIQTQPWIQLGFSYNFEVQQVLVFANKDPDYVHISTIEVQLTNGQVINRPPFYESTN--NCIKNAPWDLTFQCNSYTENNGLIIYSTDNGAMSIKEVTIII 339
BLAST of EMLSAG00000003788 vs. L. salmonis peptides
Match: EMLSAP00000000848 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1142:30276:37232:-1 gene:EMLSAG00000000848 transcript:EMLSAT00000000848 description:"maker-LSalAtl2s1142-snap-gene-0.20") HSP 1 Score: 58.151 bits (139), Expect = 6.355e-10 Identity = 36/127 (28.35%), Postives = 56/127 (44.09%), Query Frame = 0 Query: 5 SFILEHDDCTYLFISCMAHDTYGNYYVNRELCQTHYHDCLHSLELNTVTNKYGSITVITPKEPISHISYDKYNKYYYVTHDRRHLSTYTIKDVACSSPPQDLNLSCKNNGRIIIKRTFYGRRDSSTC 131 F+L DC Y F +C TYG + +N +C Y C + N YG + + PI + ++ N Y +L +++ D C + Q LSC +NG+I + FYGR + C Sbjct: 13 GFVLCQVDCLYRFFACSDDHTYGKWPMNARVCLRDYQVCTAERKWNQKETDYGRVKIT---RPIINPNHQTENGSYLTPRIVDYLYSFSCFDTICGN--QRKKLSCGSNGKIKLYFVFYGRAEKDEC 134
BLAST of EMLSAG00000003788 vs. Select Arthropod Genomes
Match: gb|KFM59728.1| (hypothetical protein X975_12970, partial [Stegodyphus mimosarum]) HSP 1 Score: 55.8398 bits (133), Expect = 7.186e-9 Identity = 37/101 (36.63%), Postives = 48/101 (47.52%), Query Frame = 0 Query: 90 STYTIKDVACSSPPQDLNLSCKNNGRIIIKRTFYGRRDSST--CPLPNAGEFGQCSVTKPIKPILEKCRNAVECLIKISELQEFGQVCKNVVPYVETIYTC 188 S T + AC +DL+L+C NN I I YGR++ S CP N C + +K I E+CR AVEC + IS F C + Y E Y C Sbjct: 35 SLSTFQAHACDG--EDLHLTCTNNTIISINFVRYGRQEKSGHLCPGINTENAKTCHLDSALKVIEERCRGAVECHLLISPQIFFEDPCPGIRKYAEVAYKC 133 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003788 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003788 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000003788 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000003788 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003788 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000003788 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003788 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s2052:11675..16438+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003788-686554 ID=EMLSAG00000003788-686554|Name=EMLSAG00000003788|organism=Lepeophtheirus salmonis|type=gene|length=4764bp|location=Sequence derived from alignment at LSalAtl2s2052:11675..16438+ (Lepeophtheirus salmonis)back to top Add to Basket
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