EMLSAG00000003789, EMLSAG00000003789-686555 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003789
Unique NameEMLSAG00000003789-686555
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003789 vs. C. finmarchicus
Match: gi|592917539|gb|GAXK01040836.1| (TSA: Calanus finmarchicus comp5199013_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.025e+0
Identity = 20/65 (30.77%), Postives = 27/65 (41.54%), Query Frame = 0 
Query:   37 DMSWCDNYYSWREESYNNYYEQRQLQFHPQSYPRKCEPYSFRNGNNHSKK-RP-----NRVRSSN 95
            D  +CD   + + ES    +    +   PQ   + CE      G N SK+ RP     N V SSN
Sbjct:  289 DFDFCDGVINTKCESIRVDFAMNDINSLPQVEEKGCEAVKIAKGGNESKETRPTCIICNMVFSSN 483
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BLAST of EMLSAG00000003789 vs. C. finmarchicus
Match: gi|592782953|gb|GAXK01171615.1| (TSA: Calanus finmarchicus comp63402_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.457e+0
Identity = 24/91 (26.37%), Postives = 39/91 (42.86%), Query Frame = 0 
Query:   10 TRSQGEKKSNDVAPHYPREDIQSFTKYDMSWCDNYYSWREESYNNYYEQRQLQFHPQSYPRKCEPYSFRNGNNHSKKRPNRVRSSNKKEQG 100
            TR QG     D+ P  P              C +  SW+ +  N   + +  Q H ++YP  C  + + +G  HS+  P R+  +N+K  G
Sbjct:  424 TRGQGSPSQRDLEPSNP--------------CPSQLSWKADQ*NCTPQNQPDQSHVEAYP--CLAFPWPSG--HSEIEPTRLLRNNQKAHG 642
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BLAST of EMLSAG00000003789 vs. C. finmarchicus
Match: gi|592782954|gb|GAXK01171614.1| (TSA: Calanus finmarchicus comp63402_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.458e+0
Identity = 24/91 (26.37%), Postives = 39/91 (42.86%), Query Frame = 0 
Query:   10 TRSQGEKKSNDVAPHYPREDIQSFTKYDMSWCDNYYSWREESYNNYYEQRQLQFHPQSYPRKCEPYSFRNGNNHSKKRPNRVRSSNKKEQG 100
            TR QG     D+ P  P              C +  SW+ +  N   + +  Q H ++YP  C  + + +G  HS+  P R+  +N+K  G
Sbjct:  424 TRGQGSPSQRDLEPSNP--------------CPSQLSWKADQ*NCTPQNQPDQSHVEAYP--CLAFPWPSG--HSEIEPTRLLRNNQKAHG 642
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BLAST of EMLSAG00000003789 vs. C. finmarchicus
Match: gi|592782955|gb|GAXK01171613.1| (TSA: Calanus finmarchicus comp63402_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.459e+0
Identity = 24/91 (26.37%), Postives = 39/91 (42.86%), Query Frame = 0 
Query:   10 TRSQGEKKSNDVAPHYPREDIQSFTKYDMSWCDNYYSWREESYNNYYEQRQLQFHPQSYPRKCEPYSFRNGNNHSKKRPNRVRSSNKKEQG 100
            TR QG     D+ P  P              C +  SW+ +  N   + +  Q H ++YP  C  + + +G  HS+  P R+  +N+K  G
Sbjct:  424 TRGQGSPSQRDLEPSNP--------------CPSQLSWKADQ*NCTPQNQPDQSHVEAYP--CLAFPWPSG--HSEIEPTRLLRNNQKAHG 642
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BLAST of EMLSAG00000003789 vs. C. finmarchicus
Match: gi|592782956|gb|GAXK01171612.1| (TSA: Calanus finmarchicus comp63402_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.460e+0
Identity = 24/91 (26.37%), Postives = 39/91 (42.86%), Query Frame = 0 
Query:   10 TRSQGEKKSNDVAPHYPREDIQSFTKYDMSWCDNYYSWREESYNNYYEQRQLQFHPQSYPRKCEPYSFRNGNNHSKKRPNRVRSSNKKEQG 100
            TR QG     D+ P  P              C +  SW+ +  N   + +  Q H ++YP  C  + + +G  HS+  P R+  +N+K  G
Sbjct:  424 TRGQGSPSQRDLEPSNP--------------CPSQLSWKADQ*NCTPQNQPDQSHVEAYP--CLAFPWPSG--HSEIEPTRLLRNNQKAHG 642
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BLAST of EMLSAG00000003789 vs. C. finmarchicus
Match: gi|592888826|gb|GAXK01069549.1| (TSA: Calanus finmarchicus comp312166_c2_seq10 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.745e+0
Identity = 17/69 (24.64%), Postives = 31/69 (44.93%), Query Frame = 0 
Query:   72 CEPYSFRNGNNHSKKRPNRVRSSNKKEQGPISKESEDTLRTRIRNETQFQEERDKERQDLVKDKVKELQ 140
            C PY F   NN     P     S  ++   ++ +S + L  +I  +   ++  D+  QD + + +K LQ
Sbjct:   10 CVPYDFNCENNADAPLPLEHDISTSEQTTSLTDDSSNDLSDQIPKDVTNEDLVDQNLQDNLFEDIKSLQ 216
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BLAST of EMLSAG00000003789 vs. L. salmonis peptides
Match: EMLSAP00000003789 (pep:novel supercontig:LSalAtl2s:LSalAtl2s20538:3:565:-1 gene:EMLSAG00000003789 transcript:EMLSAT00000003789 description:"maker-LSalAtl2s20538-augustus-gene-0.2")

HSP 1 Score: 316.235 bits (809), Expect = 1.816e-111
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 
Query:    1 MGKQRCRPYTRSQGEKKSNDVAPHYPREDIQSFTKYDMSWCDNYYSWREESYNNYYEQRQLQFHPQSYPRKCEPYSFRNGNNHSKKRPNRVRSSNKKEQGPISKESEDTLRTRIRNETQFQEERDKERQDLVKDKVKELQRKLTTAPLDSQQN 153
            MGKQRCRPYTRSQGEKKSNDVAPHYPREDIQSFTKYDMSWCDNYYSWREESYNNYYEQRQLQFHPQSYPRKCEPYSFRNGNNHSKKRPNRVRSSNKKEQGPISKESEDTLRTRIRNETQFQEERDKERQDLVKDKVKELQRKLTTAPLDSQQN
Sbjct:    1 MGKQRCRPYTRSQGEKKSNDVAPHYPREDIQSFTKYDMSWCDNYYSWREESYNNYYEQRQLQFHPQSYPRKCEPYSFRNGNNHSKKRPNRVRSSNKKEQGPISKESEDTLRTRIRNETQFQEERDKERQDLVKDKVKELQRKLTTAPLDSQQN 153
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003789 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003789 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592917539|gb|GAXK01040836.1|1.025e+030.77TSA: Calanus finmarchicus comp5199013_c0_seq1 tran... [more]
gi|592782953|gb|GAXK01171615.1|3.457e+026.37TSA: Calanus finmarchicus comp63402_c1_seq4 transc... [more]
gi|592782954|gb|GAXK01171614.1|3.458e+026.37TSA: Calanus finmarchicus comp63402_c1_seq3 transc... [more]
gi|592782955|gb|GAXK01171613.1|3.459e+026.37TSA: Calanus finmarchicus comp63402_c1_seq2 transc... [more]
gi|592782956|gb|GAXK01171612.1|3.460e+026.37TSA: Calanus finmarchicus comp63402_c1_seq1 transc... [more]
gi|592888826|gb|GAXK01069549.1|7.745e+024.64TSA: Calanus finmarchicus comp312166_c2_seq10 tran... [more]
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BLAST of EMLSAG00000003789 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000037891.816e-111100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s20538:3:5... [more]
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BLAST of EMLSAG00000003789 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003789 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003789 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003789 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s20538supercontigLSalAtl2s20538:3..565 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s20538-augustus-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003789 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003789EMLSAT00000003789-699636Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s20538:3..565-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003789-686555 ID=EMLSAG00000003789-686555|Name=EMLSAG00000003789|organism=Lepeophtheirus salmonis|type=gene|length=563bp|location=Sequence derived from alignment at LSalAtl2s20538:3..565- (Lepeophtheirus salmonis)
TGTCAATTTAATTACAATTAATAATATGGGGAAGCAAAGATGTAGGCCAT
ATACCAGGAGTCAGGGTGAAAAAAAATCCAATGATGTAGCCCCTCATTAC
CCTAGAGAAGATATTCAATCCTTCACTAAATATGATATGAGTTGGTGCGA
TAATTATTATTCCTGGAGGGAGGAGAGTTATAACAACTATTATGAACAAC
GGCAACTGCAATTTCACCCACAGTCATATCCTCGAAAATGTGAACCCTAC
TCTTTTCGTAATGGTAACAATCACTCCAAAAAACGCCCCAACCGCGTAAG
ATCATCAAATAAAAAGGAGCAAGGCCCCATTTCTAAGGAATCTGAAGATA
CCCTCCGTACACGAATCCGCAATGAGACACAATTCCAGGAGGAACGGGAT
AAAGAGCGGCAGGATTTAGTCAAGGATAAAGTCAAGGAATTACAAAGAAA
GTTAACCACGGTAGTTATAATTATTAGTTATATACTTCGAATGGATTTGA
CTTAACAATGAATCTTACTTCTGTTTTATTTCTATTAAGGCACCCTTGGA
TTCTCAGCAGAAC
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