EMLSAG00000003825, EMLSAG00000003825-686591 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000003825
Unique Name	EMLSAG00000003825-686591
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:SmF "Small ribonucleoprotein particle protein SmF" species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal complex" evidence=ISS;NAS] [GO:0007052 "mitotic spindle organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0007052 GO:GO:0003723 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 OrthoDB:EOG7HXCTK GeneTree:ENSGT00730000110856 KO:K11098 OMA:STDGYMN EMBL:L33341 EMBL:AY118862 RefSeq:NP_523708.2 UniGene:Dm.14460 ProteinModelPortal:Q24297 SMR:Q24297 BioGrid:62093 DIP:DIP-20723N IntAct:Q24297 MINT:MINT-768802 STRING:7227.FBpp0087118 PaxDb:Q24297 EnsemblMetazoa:FBtr0088010 GeneID:36314 KEGG:dme:Dmel_CG16792 CTD:36314 FlyBase:FBgn0000426 InParanoid:Q24297 PhylomeDB:Q24297 GenomeRNAi:36314 NextBio:797873 PRO:PR:Q24297 Bgee:Q24297 Uniprot:Q24297)

HSP 1 Score: 142.51 bits (358), Expect = 1.496e-43
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGK V+VKLKWG EYKG+LVS DGYMN+QLANTEE I+G+ TG LGEVL+RCNNVLYI+G+++DDEEGE R+
Sbjct:    4 GMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEGEMRD 88

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:SNRPF "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 OrthoDB:EOG7HXCTK GeneTree:ENSGT00730000110856 OMA:STDGYMN TreeFam:TF314481 EMBL:AAEX03009953 ProteinModelPortal:F1Q0L5 Ensembl:ENSCAFT00000010335 Uniprot:F1Q0L5)

HSP 1 Score: 134.42 bits (337), Expect = 4.082e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:   26 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 100

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:SNRPF "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 OrthoDB:EOG7HXCTK GeneTree:ENSGT00730000110856 TreeFam:TF314481 EMBL:AADN03000328 Ensembl:ENSGALT00000018617 NextBio:20821146 PRO:PR:F1P4B8 Uniprot:F1P4B8)

HSP 1 Score: 134.035 bits (336), Expect = 5.215e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:   27 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 101

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:Snrpf "Protein Snrpf" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609 RGD:1588229 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 EMBL:CH473960 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 OrthoDB:EOG7HXCTK CTD:6636 GeneTree:ENSGT00730000110856 KO:K11098 OMA:STDGYMN TreeFam:TF314481 EMBL:AABR06048827 RefSeq:NP_001119563.1 UniGene:Rn.14918 Ensembl:ENSRNOT00000007351 GeneID:680737 KEGG:rno:680737 UCSC:RGD:1588229 NextBio:719400 Uniprot:D4AAT4)

HSP 1 Score: 132.88 bits (333), Expect = 9.044e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F" species:10116 "Rattus norvegicus" [GO:0000387 "spliceosomal snRNP assembly" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005683 "U7 snRNP" evidence=IEA;ISO] [GO:0005685 "U1 snRNP" evidence=ISO] [GO:0005687 "U4 snRNP" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA;ISO] [GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISO] [GO:0034709 "methylosome" evidence=ISO] [GO:0034715 "pICln-Sm protein complex" evidence=ISO] [GO:0034719 "SMN-Sm protein complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR016487 PIRSF:PIRSF006609 RGD:1588229 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 EMBL:CH473960 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 OrthoDB:EOG7HXCTK CTD:6636 GeneTree:ENSGT00730000110856 KO:K11098 OMA:STDGYMN TreeFam:TF314481 EMBL:AABR06048827 RefSeq:NP_001119563.1 UniGene:Rn.14918 Ensembl:ENSRNOT00000007351 GeneID:680737 KEGG:rno:680737 UCSC:RGD:1588229 NextBio:719400 Uniprot:D4AAT4)

HSP 1 Score: 132.88 bits (333), Expect = 9.044e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F" species:10090 "Mus musculus" [GO:0000387 "spliceosomal snRNP assembly" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005685 "U1 snRNP" evidence=ISO] [GO:0005687 "U4 snRNP" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISO] [GO:0034709 "methylosome" evidence=ISO] [GO:0034715 "pICln-Sm protein complex" evidence=ISO] [GO:0034719 "SMN-Sm protein complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609 MGI:MGI:1917128 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0003723 GO:GO:0034709 GO:GO:0000387 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0034719 GO:GO:0005689 GO:GO:0005687 Pfam:PF01423 GO:GO:0034715 GO:GO:0005685 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 eggNOG:COG1958 HOVERGEN:HBG052369 OrthoDB:EOG7HXCTK CTD:6636 KO:K11098 OMA:STDGYMN TreeFam:TF314481 NextBio:25853 EMBL:AK008240 RefSeq:NP_081522.1 UniGene:Mm.259642 ProteinModelPortal:P62307 SMR:P62307 IntAct:P62307 MINT:MINT-1527856 PhosphoSite:P62307 PaxDb:P62307 PRIDE:P62307 Ensembl:ENSMUST00000020203 GeneID:69878 KEGG:mmu:69878 UCSC:uc007guw.2 InParanoid:P62307 PRO:PR:P62307 ArrayExpress:P62307 Bgee:P62307 CleanEx:MM_SNRPF Genevestigator:P62307 Uniprot:P62307)

HSP 1 Score: 132.88 bits (333), Expect = 9.044e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:snrpf "Small nuclear ribonucleoprotein F" species:8355 "Xenopus laevis" [GO:0000387 "spliceosomal snRNP assembly" evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0005687 "U4 snRNP" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0034709 "methylosome" evidence=ISS] [GO:0034715 "pICln-Sm protein complex" evidence=ISS] [GO:0034719 "SMN-Sm protein complex" evidence=ISS] InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005681 GO:GO:0003723 GO:GO:0034709 GO:GO:0000387 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0034719 GO:GO:0005687 Pfam:PF01423 GO:GO:0034715 GO:GO:0005685 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG052369 CTD:6636 KO:K11098 EMBL:BC056127 RefSeq:NP_001080901.1 UniGene:Xl.55007 ProteinModelPortal:P62321 SMR:P62321 PRIDE:P62321 GeneID:380595 KEGG:xla:380595 Xenbase:XB-GENE-1188432 Uniprot:P62321)

HSP 1 Score: 132.88 bits (333), Expect = 9.044e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:SNRPF "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 OrthoDB:EOG7HXCTK CTD:6636 GeneTree:ENSGT00730000110856 KO:K11098 OMA:STDGYMN TreeFam:TF314481 EMBL:CU633406 RefSeq:NP_001177142.1 UniGene:Ssc.5241 ProteinModelPortal:F1SQR4 SMR:F1SQR4 PRIDE:F1SQR4 Ensembl:ENSSSCT00000000979 GeneID:100155855 KEGG:ssc:100155855 Uniprot:F1SQR4)

HSP 1 Score: 132.88 bits (333), Expect = 9.044e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:SNRPF "Small nuclear ribonucleoprotein F" species:9606 "Homo sapiens" [GO:0000387 "spliceosomal snRNP assembly" evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0005687 "U4 snRNP" evidence=IDA] [GO:0005689 "U12-type spliceosomal complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA;TAS] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS] [GO:0008334 "histone mRNA metabolic process" evidence=TAS] [GO:0008380 "RNA splicing" evidence=IMP;TAS] [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IDA] [GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS] [GO:0034709 "methylosome" evidence=IDA] [GO:0034715 "pICln-Sm protein complex" evidence=IDA] [GO:0034719 "SMN-Sm protein complex" evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 EMBL:CH471054 GO:GO:0003723 GO:GO:0034709 GO:GO:0000387 GO:GO:0034660 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 GO:GO:0034719 GO:GO:0005689 GO:GO:0005687 PDB:1VU2 PDB:1VU3 PDB:4F77 PDBsum:1VU2 PDBsum:1VU3 PDBsum:4F77 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0034715 PDB:4F7U PDBsum:4F7U GO:GO:0008334 GO:GO:0005685 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 eggNOG:COG1958 HOVERGEN:HBG052369 OrthoDB:EOG7HXCTK PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW CTD:6636 KO:K11098 OMA:STDGYMN TreeFam:TF314481 EMBL:X85372 EMBL:CR456751 EMBL:AK311752 EMBL:BC002505 EMBL:BC063397 EMBL:BC128452 EMBL:BC128453 PIR:S55053 RefSeq:NP_003086.1 UniGene:Hs.105465 ProteinModelPortal:P62306 SMR:P62306 BioGrid:112520 DIP:DIP-31221N IntAct:P62306 MINT:MINT-1137229 STRING:9606.ENSP00000266735 PhosphoSite:P62306 DMDM:61237391 PaxDb:P62306 PeptideAtlas:P62306 PRIDE:P62306 Ensembl:ENST00000266735 GeneID:6636 KEGG:hsa:6636 UCSC:uc001tej.3 GeneCards:GC12P096252 HGNC:HGNC:11162 MIM:603541 neXtProt:NX_P62306 PharmGKB:PA36003 InParanoid:P62306 PhylomeDB:P62306 ChiTaRS:SNRPF EvolutionaryTrace:P62306 GeneWiki:Small_nuclear_ribonucleoprotein_polypeptide_F GenomeRNAi:6636 NextBio:25853 PMAP-CutDB:P62306 PRO:PR:P62306 ArrayExpress:P62306 Bgee:P62306 CleanEx:HS_SNRPF Genevestigator:P62306 Uniprot:P62306)

HSP 1 Score: 132.88 bits (333), Expect = 9.044e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

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BLAST of EMLSAG00000003825 vs. GO
Match: - (symbol:SNRPF "Small nuclear ribonucleoprotein F" species:9913 "Bos taurus" [GO:0000387 "spliceosomal snRNP assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0005687 "U4 snRNP" evidence=ISS] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0005829 "cytosol" evidence=ISS] [GO:0034709 "methylosome" evidence=ISS] [GO:0034715 "pICln-Sm protein complex" evidence=ISS] [GO:0034719 "SMN-Sm protein complex" evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0003723 GO:GO:0034709 GO:GO:0000387 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0034719 GO:GO:0005689 GO:GO:0005687 Pfam:PF01423 UniGene:Bt.24628 GO:GO:0034715 GO:GO:0005685 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 eggNOG:COG1958 HOGENOM:HOG000223542 HOVERGEN:HBG052369 OrthoDB:EOG7HXCTK EMBL:BC102192 RefSeq:NP_001181956.1 ProteinModelPortal:Q3T0Z8 SMR:Q3T0Z8 STRING:9913.ENSBTAP00000021643 PRIDE:Q3T0Z8 Ensembl:ENSBTAT00000021643 GeneID:615240 KEGG:bta:615240 CTD:6636 GeneTree:ENSGT00730000110856 InParanoid:Q3T0Z8 KO:K11098 OMA:STDGYMN TreeFam:TF314481 NextBio:20899519 Uniprot:Q3T0Z8)

HSP 1 Score: 132.88 bits (333), Expect = 9.044e-40
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

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BLAST of EMLSAG00000003825 vs. C. finmarchicus
Match: gi|592892458|gb|GAXK01065917.1| (TSA: Calanus finmarchicus comp4516_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 144.05 bits (362), Expect = 7.873e-44
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 0

Query:    3 MPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEE 81
            MP+NPKPFLN LTGKAVMVKLKWGHEYKG+LVS+DGYMN+QLANTEE+IDG CTG LGEVLVRCNNVLYIR  +ED  E
Sbjct:  213 MPMNPKPFLNGLTGKAVMVKLKWGHEYKGFLVSSDGYMNLQLANTEEFIDGACTGNLGEVLVRCNNVLYIRAAEEDGGE 449

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BLAST of EMLSAG00000003825 vs. C. finmarchicus
Match: gi|592785257|gb|GAXK01169311.1| (TSA: Calanus finmarchicus comp1533_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 70.8626 bits (172), Expect = 7.710e-16
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYI 72
            M+   NP  FL ++ G+ V+VKL  G +Y+G L   DGYMN+ L  TEEY++G      G+  +R NNVLYI
Sbjct:   37 MSRRQNPNDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYI 252

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BLAST of EMLSAG00000003825 vs. C. finmarchicus
Match: gi|592907668|gb|GAXK01050707.1| (TSA: Calanus finmarchicus comp1558328_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.218e-5
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 0

Query:   52 DGNCTGTLGEVLVRCNNVLYI 72
            D  CTG LGEVLVRCNNVLYI
Sbjct:  181 DRACTGNLGEVLVRCNNVLYI 243

HSP 2 Score: 28.1054 bits (61), Expect = 1.218e-5
Identity = 17/35 (48.57%), Postives = 21/35 (60.00%), Query Frame = 0

Query:    5 INPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGY 39
            IN    +N LT KAV      GH Y G++VS+DGY
Sbjct:  254 INSIMAMN-LTLKAV------GHAYMGFMVSSDGY 337

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BLAST of EMLSAG00000003825 vs. C. finmarchicus
Match: gi|592766292|gb|GAXK01188276.1| (TSA: Calanus finmarchicus comp10354_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.158e-3
Identity = 24/71 (33.80%), Postives = 36/71 (50.70%), Query Frame = 0

Query:    7 PKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYI----DGNCTGTLGEVLVRCNNVLYIR 73
            P   L       ++V+LK G  Y G+LVS D +MN+   N  E I    DG+    + E  +R +N+ Y+R
Sbjct:   53 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNI---NLREVICTSRDGDKFWRMPECYIRGSNIKYLR 256

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BLAST of EMLSAG00000003825 vs. C. finmarchicus
Match: gi|592766293|gb|GAXK01188275.1| (TSA: Calanus finmarchicus comp10354_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.242e-3
Identity = 24/71 (33.80%), Postives = 36/71 (50.70%), Query Frame = 0

Query:    7 PKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYI----DGNCTGTLGEVLVRCNNVLYIR 73
            P   L       ++V+LK G  Y G+LVS D +MN+   N  E I    DG+    + E  +R +N+ Y+R
Sbjct:   88 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNI---NLREVICTSRDGDKFWRMPECYIRGSNIKYLR 291

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BLAST of EMLSAG00000003825 vs. C. finmarchicus
Match: gi|592867528|gb|GAXK01090034.1| (TSA: Calanus finmarchicus comp2830198_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.318e-1
Identity = 25/60 (41.67%), Postives = 31/60 (51.67%), Query Frame = 0

Query:   11 LNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVL 70
            LN LT KA+  KLK         + +D  MN QLANT  +     T  LGE+LV   NV+
Sbjct:  886 LNGLTEKAMKAKLK--------RLFSDV*MNPQLANTTAFTARTHTSNLGEMLVLGINVI 1041

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BLAST of EMLSAG00000003825 vs. L. salmonis peptides
Match: EMLSAP00000003825 (pep:novel supercontig:LSalAtl2s:LSalAtl2s206:256317:256577:-1 gene:EMLSAG00000003825 transcript:EMLSAT00000003825 description:"snap-LSalAtl2s206-processed-gene-2.31")

HSP 1 Score: 179.104 bits (453), Expect = 1.567e-59
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
            MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE
Sbjct:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86

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BLAST of EMLSAG00000003825 vs. L. salmonis peptides
Match: EMLSAP00000011554 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7:708980:710064:-1 gene:EMLSAG00000011554 transcript:EMLSAT00000011554 description:"maker-LSalAtl2s7-augustus-gene-7.22")

HSP 1 Score: 51.9878 bits (123), Expect = 1.522e-9
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0

Query:    7 PKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDG 53
            PK FL ++ G+ V+VKL  G +Y+G L   DG+MN+ L  TEEY  G
Sbjct:   10 PKDFLKQILGRPVLVKLNSGSDYRGVLSCLDGHMNIALEQTEEYSQG 56

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BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|29337191|sp|Q24297.2|RUXF_DROME (RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Membrane-associated protein Deb-B; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF)

HSP 1 Score: 142.51 bits (358), Expect = 5.142e-45
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGK V+VKLKWG EYKG+LVS DGYMN+QLANTEE I+G+ TG LGEVL+RCNNVLYI+G+++DDEEGE R+
Sbjct:    4 GMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEGEMRD 88

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BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|54039569|sp|P62321.1|RUXF_XENLA (RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF >gi|61237391|sp|P62306.1|RUXF_HUMAN RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF >gi|61237394|sp|P62307.1|RUXF_MOUSE RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF >gi|166233535|sp|Q3T0Z8.2|RUXF_BOVIN RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF)

HSP 1 Score: 132.88 bits (333), Expect = 3.404e-41
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
            M++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDG  +G LGEVL+RCNNVLYIRGV
Sbjct:    1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV 75

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BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|10720264|sp|Q9SUM2.1|RUXF_ARATH (RecName: Full=Probable small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF)

HSP 1 Score: 130.568 bits (327), Expect = 2.306e-40
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDE 80
             +P+NPKPFLN LTGK V+VKLKWG EYKG+L S D YMN+QL NTEEYIDG  TG LGE+L+RCNNVLY+RGV ED+E
Sbjct:    3 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEE 81

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BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|466158|sp|P34659.1|RUXF_CAEEL (RecName: Full=Probable small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF)

HSP 1 Score: 117.857 bits (294), Expect = 3.022e-35
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 0

Query:    4 PINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDE 80
            P+NPKPFLN LTGK V+ KLKWG EYKG LV+ D YMN+QLA+ EEYIDGN  G LGE+L+RCNNVLY+ GV  ++E
Sbjct:    6 PVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNNVLYVGGVDGENE 82

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BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|6094210|sp|O59734.1|RUXF_SCHPO (RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF)

HSP 1 Score: 102.064 bits (253), Expect = 3.987e-29
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0

Query:    3 MPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYI 72
            +P+NPKPFL  L GK V+V+LKWG EYKG L S D YMN+QL N EE +DG  TG LGE+L+RCNNVL++
Sbjct:    4 VPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNVLWV 73

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BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|30580500|sp|Q9P5Z8.1|RUXF_NEUCR (RecName: Full=Probable small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF)

HSP 1 Score: 100.908 bits (250), Expect = 1.689e-28
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0

Query:    3 MPINPKPFLNELTGKAVMVKLKWGH-EYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETR 85
            +P+NP+PFL +L    V ++LKWG  EY G LVS D YMN+QL++T+EYI+   TG LG+VL+RCNNVLYI+   E +  G+ +
Sbjct:    4 VPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIRCNNVLYIKKADEAETSGDVK 87

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BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|74856500|sp|Q54XP2.1|RUXF_DICDI (RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF)

HSP 1 Score: 100.138 bits (248), Expect = 3.071e-28
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0

Query:    5 INPKPFLNELTGKAVMVKLKWG-HEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDE 80
            + PKPFL +L GK + V+LKWG  EY+G L S D YMN+QLA TEE+IDG   G LGEVL+RCNNVL++RG+  DDE
Sbjct:    7 LAPKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIRCNNVLFVRGI--DDE 81

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BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|1711405|sp|P54999.1|RUXF_YEAST (RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F; Short=SmF)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-23
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0

Query:    4 PINPKPFLNELTGKAVMVKLKWGH-EYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIR 73
            P+NPKPFL  L    V VKLK+   EY+G LVSTD Y N+QL   EE++ G   GTLGE+ +RCNNVLYIR
Sbjct:   12 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIR 82

[Close]

BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|189028837|sp|A6R363.1|LSM6_AJECN (RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 76.2554 bits (186), Expect = 5.722e-19
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    6 NPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYI 72
            +P  FL+E+TG  V VKL  G  YKG L S DGYMN+ L  TEEY+DG    + G+  VR NNVLYI
Sbjct:   11 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVRGNNVLYI 77

[Close]

BLAST of EMLSAG00000003825 vs. SwissProt
Match: gi|10720076|sp|Q9UUI1.1|LSM6_SCHPO (RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 73.559 bits (179), Expect = 6.566e-18
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0

Query:    3 MPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQE 77
            M  +P  FLN++ GK V+++L  G +YKG L   DGYMN+ L  TEEY++G  T   G+  +R NNVLY+  + +
Sbjct:    1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD 75

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: EAA07677.2 (AGAP002658-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 146.747 bits (369), Expect = 4.388e-47
Identity = 66/85 (77.65%), Postives = 77/85 (90.59%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
            AMPINPKPFLN LTGK V++KLKWGHEYKG+LVS DGYMN+QLANTEE++DG  TG LGEVL+RCNNVLYIRG+ ++DEEGE R+
Sbjct:    4 AMPINPKPFLNGLTGKPVIIKLKWGHEYKGFLVSVDGYMNMQLANTEEFVDGQNTGHLGEVLIRCNNVLYIRGIDDEDEEGEMRD 88

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: gb|EEC17272.1| (membrane-associated protein, putative [Ixodes scapularis])

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-45
Identity = 68/85 (80.00%), Postives = 79/85 (92.94%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
            ++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDGNCTG LGEVLVRCNNVLY+RGV+E++E+GE ++
Sbjct:    3 SLPLNPKPFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEVLVRCNNVLYVRGVEEEEEDGEMKD 87

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: AAF58559.2 (small ribonucleoprotein particle protein SmF [Drosophila melanogaster])

HSP 1 Score: 142.51 bits (358), Expect = 2.492e-45
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGK V+VKLKWG EYKG+LVS DGYMN+QLANTEE I+G+ TG LGEVL+RCNNVLYI+G+++DDEEGE R+
Sbjct:    4 GMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNNVLYIKGMEDDDEEGEMRD 88

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: gb|EEC12230.1| (membrane-associated protein, putative, partial [Ixodes scapularis])

HSP 1 Score: 141.739 bits (356), Expect = 4.138e-45
Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGE 83
            ++P+NPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYIDGNCTG LGEVLVRCNNVLY+RGV+E++E+GE
Sbjct:    3 SLPLNPKPFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEVLVRCNNVLYVRGVEEEEEDGE 84

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: gb|EFA04291.1| (Small nuclear ribonucleoprotein F-like Protein [Tribolium castaneum])

HSP 1 Score: 141.739 bits (356), Expect = 4.314e-45
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
            AMPINPKPFLN LTGKAVMVKLKWGHEYKGYLVS DGYMN+QLANTEE+IDGN TG LGEVL+RCNNVL+IRG +E+DEEGET++
Sbjct:    4 AMPINPKPFLNGLTGKAVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEFIDGNMTGNLGEVLIRCNNVLFIRGAEEEDEEGETKD 88

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: XP_016770018.1 (PREDICTED: small nuclear ribonucleoprotein F [Apis mellifera])

HSP 1 Score: 140.969 bits (354), Expect = 8.520e-45
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
             MPINPKPFLN LTGK VMVKLKWGHEYKGYLVS DGYMN+QLANTEE+IDGNCTG LGEVL+RCNNV+YIRGV
Sbjct:    4 TMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGNCTGNLGEVLIRCNNVMYIRGV 77

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: XP_003250168.1 (PREDICTED: small nuclear ribonucleoprotein F [Apis mellifera])

HSP 1 Score: 140.969 bits (354), Expect = 8.520e-45
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
             MPINPKPFLN LTGK VMVKLKWGHEYKGYLVS DGYMN+QLANTEE+IDGNCTG LGEVL+RCNNV+YIRGV
Sbjct:    4 TMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGNCTGNLGEVLIRCNNVMYIRGV 77

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: EFX89371.1 (hypothetical protein DAPPUDRAFT_220519 [Daphnia pulex])

HSP 1 Score: 139.043 bits (349), Expect = 4.721e-44
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 0

Query:    3 MPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIR 73
            MPINPKPFLN LTGK +MVKLKWGHEYKGYLVS DGYMN+QLANTEEYIDG+CTG LGEVLVRCNNVLYIR
Sbjct:    5 MPINPKPFLNALTGKPIMVKLKWGHEYKGYLVSVDGYMNLQLANTEEYIDGSCTGNLGEVLVRCNNVLYIR 75

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: EEB11893.1 (membrane-associated protein, putative [Pediculus humanus corporis])

HSP 1 Score: 135.576 bits (340), Expect = 1.081e-42
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGV 75
             MPINPKPFLN LTGK VMVKLKWG EYKGYLVS DGYMN+QLANTEEYI G  TG+LGEVLVRCNNVLYIRGV
Sbjct:    3 TMPINPKPFLNSLTGKPVMVKLKWGQEYKGYLVSVDGYMNLQLANTEEYISGQPTGSLGEVLVRCNNVLYIRGV 76

[Close]

BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Match: gb|KPM04657.1| (small nuclear ribonucleoprotein F-like protein [Sarcoptes scabiei])

HSP 1 Score: 134.806 bits (338), Expect = 2.348e-42
Identity = 64/85 (75.29%), Postives = 75/85 (88.24%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             +P+NPKPFLN LTGK V VKLKWG EYKG+LVS D YMN+QLANTEEYIDG CTG LGEVLVRCNNVLYIRG++E++E+GE ++
Sbjct:    4 TLPLNPKPFLNSLTGKPVSVKLKWGMEYKGFLVSVDAYMNLQLANTEEYIDGACTGNLGEVLVRCNNVLYIRGLEEEEEDGEMKD 88

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|290561351|gb|ADD38076.1| (Small nuclear ribonucleoprotein F [Lepeophtheirus salmonis])

HSP 1 Score: 179.104 bits (453), Expect = 3.626e-57
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
            MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE
Sbjct:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|225709496|gb|ACO10594.1| (Small nuclear ribonucleoprotein F [Caligus rogercresseyi])

HSP 1 Score: 176.792 bits (447), Expect = 2.796e-56
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
            MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVS+DGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGET+E
Sbjct:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSSDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETKE 86

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|780670960|ref|XP_011695222.1| (PREDICTED: small nuclear ribonucleoprotein F [Wasmannia auropunctata])

HSP 1 Score: 155.606 bits (392), Expect = 8.468e-48
Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGKAVMVKLKWGHEYKGYLVS DGYMN+QLA+TEE+IDGNCTG LGEVL+RCNNV+YIRGV+E DEEGE ++
Sbjct:    4 TMPINPKPFLNGLTGKAVMVKLKWGHEYKGYLVSVDGYMNLQLASTEEHIDGNCTGNLGEVLIRCNNVMYIRGVEESDEEGEMKD 88

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|751200252|ref|XP_011161241.1| (PREDICTED: small nuclear ribonucleoprotein F [Solenopsis invicta] >gi|769852677|ref|XP_011637819.1| PREDICTED: small nuclear ribonucleoprotein F [Pogonomyrmex barbatus] >gi|769852679|ref|XP_011637820.1| PREDICTED: small nuclear ribonucleoprotein F [Pogonomyrmex barbatus] >gi|1101639853|ref|XP_018919101.1| PREDICTED: small nuclear ribonucleoprotein F [Cyprinus carpio] >gi|861592920|gb|KMQ82933.1| small nuclear ribonucleoprotein f-like protein [Lasius niger])

HSP 1 Score: 154.451 bits (389), Expect = 1.806e-47
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGK VMVKLKWGHEYKGYLVS DGYMN+QLANTEE+IDGNCTG LGEVL+RCNNV+YIRGV+E DEEGE ++
Sbjct:    4 TMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGNCTGNLGEVLIRCNNVMYIRGVEESDEEGEMKD 88

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|795028574|ref|XP_011862660.1| (PREDICTED: small nuclear ribonucleoprotein F [Vollenhovia emeryi])

HSP 1 Score: 154.066 bits (388), Expect = 2.623e-47
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGK VMVKLKWGHEYKGYLVS DGYMN+QLANTEE+IDGNCTG LGEVL+RCNN++YIRGV+E DEEGE ++
Sbjct:    4 TMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGNCTGNLGEVLIRCNNIMYIRGVEESDEEGEMKD 88

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|1131310656|gb|JAV05688.1| (putative small nuclear ribonucleoprotein snrnp smf [Nyssomyia neivai])

HSP 1 Score: 154.066 bits (388), Expect = 3.127e-47
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
            +MPINPKPFLN LTGKAVMVKLKWGHEYKGYLVS D YMN+QLANTEE+IDG  TG LGEVL+RCNNVLYIRG+++DDEEGE R+
Sbjct:    4 SMPINPKPFLNSLTGKAVMVKLKWGHEYKGYLVSVDSYMNLQLANTEEHIDGQNTGNLGEVLIRCNNVLYIRGIEDDDEEGEMRD 88

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|815817467|ref|XP_012229861.1| (PREDICTED: small nuclear ribonucleoprotein F [Linepithema humile])

HSP 1 Score: 154.066 bits (388), Expect = 3.162e-47
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MP+NPKPFLN LTGK VMVKLKWGHEYKGYLVS DGYMN+QLANTEE+IDGNCTG LGEVL+RCNNV+YIRGV+E DEEGE ++
Sbjct:    4 TMPVNPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGNCTGNLGEVLIRCNNVMYIRGVEESDEEGEMKD 88

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|759082710|ref|XP_011351243.1| (PREDICTED: small nuclear ribonucleoprotein F [Cerapachys biroi])

HSP 1 Score: 153.68 bits (387), Expect = 6.742e-47
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGK VMVKLKWGHEYKGYLVS DGYMN+QLANTEE+I+G CTGTLGEVL+RCNNV+YIRGV+E DEEGE ++
Sbjct:   22 TMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGTCTGTLGEVLIRCNNVMYIRGVEESDEEGEMKD 106

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|752867320|ref|XP_011250682.1| (PREDICTED: small nuclear ribonucleoprotein F [Camponotus floridanus])

HSP 1 Score: 153.295 bits (386), Expect = 7.124e-47
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGK VMVKLKWGHEYKGYLVS DGYMN+QLANTEE+IDG+CTG LGEVL+RCNNV+YIRGV+E DEEGE ++
Sbjct:    4 TMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGSCTGNLGEVLIRCNNVMYIRGVEESDEEGEMKD 88

[Close]

BLAST of EMLSAG00000003825 vs. nr
Match: gi|746830335|ref|XP_011064815.1| (PREDICTED: small nuclear ribonucleoprotein F [Acromyrmex echinatior] >gi|746830337|ref|XP_011064886.1| PREDICTED: small nuclear ribonucleoprotein F [Acromyrmex echinatior] >gi|801392285|ref|XP_012057863.1| PREDICTED: small nuclear ribonucleoprotein F [Atta cephalotes] >gi|801392297|ref|XP_012057864.1| PREDICTED: small nuclear ribonucleoprotein F [Atta cephalotes] >gi|1068415269|ref|XP_018053350.1| PREDICTED: small nuclear ribonucleoprotein F [Atta colombica] >gi|1068415272|ref|XP_018053351.1| PREDICTED: small nuclear ribonucleoprotein F [Atta colombica] >gi|1069690316|ref|XP_018305298.1| PREDICTED: small nuclear ribonucleoprotein F [Trachymyrmex zeteki] >gi|1070190825|ref|XP_018367199.1| PREDICTED: small nuclear ribonucleoprotein F [Trachymyrmex cornetzi] >gi|1070196390|ref|XP_018353783.1| PREDICTED: small nuclear ribonucleoprotein F [Trachymyrmex septentrionalis] >gi|1070600062|ref|XP_018397382.1| PREDICTED: small nuclear ribonucleoprotein F [Cyphomyrmex costatus] >gi|332031555|gb|EGI71027.1| Small nuclear ribonucleoprotein F [Acromyrmex echinatior] >gi|1009377710|gb|KYN00986.1| Small nuclear ribonucleoprotein F [Cyphomyrmex costatus] >gi|1009396103|gb|KYN16859.1| Small nuclear ribonucleoprotein F [Trachymyrmex cornetzi] >gi|1009412592|gb|KYN31517.1| Small nuclear ribonucleoprotein F [Trachymyrmex septentrionalis] >gi|1012980335|gb|KYQ54258.1| Small nuclear ribonucleoprotein F [Trachymyrmex zeteki])

HSP 1 Score: 152.91 bits (385), Expect = 9.582e-47
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGETRE 86
             MPINPKPFLN LTGK VMVKLKWGHEYKGYLVS DGYMN+QLANTEE+I+GNCTG LGEVL+RCNNV+YIRGV+E DEEGE ++
Sbjct:    4 TMPINPKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGNCTGNLGEVLIRCNNVMYIRGVEESDEEGEMKD 88

[Close]

BLAST of EMLSAG00000003825 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1091_size63258-snap-gene-0.13 (protein:Tk11567 transcript:maker-scaffold1091_size63258-snap-gene-0.13-mRNA-1 annotation:"small nuclear ribonucleoprotein f")

HSP 1 Score: 150.214 bits (378), Expect = 3.566e-49
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 0

Query:    3 MPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYIRGVQEDDEEGE 83
            MP+NPKPFLN LTGK VMVKLKWGHEYKG+LVSTDGYMN+QLA+TEE+IDG+CTG LGEVLVRCNNVLY+RGV+EDD   E
Sbjct:   31 MPMNPKPFLNSLTGKPVMVKLKWGHEYKGFLVSTDGYMNLQLASTEEFIDGSCTGNLGEVLVRCNNVLYVRGVEEDDAAPE 111

[Close]

BLAST of EMLSAG00000003825 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold3458_size8557-processed-gene-0.1 (protein:Tk10843 transcript:snap_masked-scaffold3458_size8557-processed-gene-0.1-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_220519")

HSP 1 Score: 117.857 bits (294), Expect = 4.946e-37
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0

Query:    2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLV 64
             MP+NPKPFLN LTGK VMVKLKWGHEYKG+LVSTDGYMN+QLA+TEE+IDG+CTG LGEVLV
Sbjct:    3 TMPMNPKPFLNSLTGKPVMVKLKWGHEYKGFLVSTDGYMNLQLASTEEFIDGSCTGNLGEVLV 65

[Close]

BLAST of EMLSAG00000003825 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold548_size139981-processed-gene-0.4 (protein:Tk08558 transcript:snap_masked-scaffold548_size139981-processed-gene-0.4-mRNA-1 annotation:"u6 snrna-associated sm-like protein lsm6")

HSP 1 Score: 75.0998 bits (183), Expect = 5.936e-20
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 0

Query:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYI 72
            MA   NP  FL  L G+ V+VKL  G +Y+G L S DGYMN+ L  TEEY++G      G+  +R NNVLYI
Sbjct:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYI 72

The following BLAST results are available for this feature:

BLAST of EMLSAG00000003825 vs. GO
BLAST of EMLSAG00000003825 vs. C. finmarchicus
BLAST of EMLSAG00000003825 vs. L. salmonis peptides
BLAST of EMLSAG00000003825 vs. SwissProt
BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
BLAST of EMLSAG00000003825 vs. nr
BLAST of EMLSAG00000003825 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000003825 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25


Match Name	E-value	Identity	Description
-	1.496e-43	76.47	symbol:SmF "Small ribonucleoprotein particle prote...	[more]
-	4.082e-40	82.67	symbol:SNRPF "Uncharacterized protein" species:961...	[more]
-	5.215e-40	82.67	symbol:SNRPF "Uncharacterized protein" species:903...	[more]
-	9.044e-40	82.67	symbol:Snrpf "Protein Snrpf" species:10116 "Rattus...	[more]
-	9.044e-40	82.67	symbol:Snrpf "small nuclear ribonucleoprotein poly...	[more]
-	9.044e-40	82.67	symbol:Snrpf "small nuclear ribonucleoprotein poly...	[more]
-	9.044e-40	82.67	symbol:snrpf "Small nuclear ribonucleoprotein F" s...	[more]
-	9.044e-40	82.67	symbol:SNRPF "Uncharacterized protein" species:982...	[more]
-	9.044e-40	82.67	symbol:SNRPF "Small nuclear ribonucleoprotein F" s...	[more]
-	9.044e-40	82.67	symbol:SNRPF "Small nuclear ribonucleoprotein F" s...	[more]

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BLAST of EMLSAG00000003825 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6


Match Name	E-value	Identity	Description
gi\|592892458\|gb\|GAXK01065917.1\|	7.873e-44	83.54	TSA: Calanus finmarchicus comp4516_c0_seq1 transcr...	[more]
gi\|592785257\|gb\|GAXK01169311.1\|	7.710e-16	45.83	TSA: Calanus finmarchicus comp1533_c0_seq1 transcr...	[more]
gi\|592907668\|gb\|GAXK01050707.1\|	1.218e-5	85.71	TSA: Calanus finmarchicus comp1558328_c0_seq2 tran...	[more]
gi\|592766292\|gb\|GAXK01188276.1\|	1.158e-3	33.80	TSA: Calanus finmarchicus comp10354_c0_seq2 transc...	[more]
gi\|592766293\|gb\|GAXK01188275.1\|	1.242e-3	33.80	TSA: Calanus finmarchicus comp10354_c0_seq1 transc...	[more]
gi\|592867528\|gb\|GAXK01090034.1\|	1.318e-1	41.67	TSA: Calanus finmarchicus comp2830198_c0_seq1 tran...	[more]

BLAST of EMLSAG00000003825 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2


Match Name	E-value	Identity	Description
EMLSAP00000003825	1.567e-59	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s206:25631...	[more]
EMLSAP00000011554	1.522e-9	48.94	pep:novel supercontig:LSalAtl2s:LSalAtl2s7:708980:...	[more]

BLAST of EMLSAG00000003825 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|29337191\|sp\|Q24297.2\|RUXF_DROME	5.142e-45	76.47	RecName: Full=Small nuclear ribonucleoprotein F; S...	[more]
gi\|54039569\|sp\|P62321.1\|RUXF_XENLA	3.404e-41	82.67	RecName: Full=Small nuclear ribonucleoprotein F; S...	[more]
gi\|10720264\|sp\|Q9SUM2.1\|RUXF_ARATH	2.306e-40	73.42	RecName: Full=Probable small nuclear ribonucleopro...	[more]
gi\|466158\|sp\|P34659.1\|RUXF_CAEEL	3.022e-35	68.83	RecName: Full=Probable small nuclear ribonucleopro...	[more]
gi\|6094210\|sp\|O59734.1\|RUXF_SCHPO	3.987e-29	64.29	RecName: Full=Small nuclear ribonucleoprotein F; S...	[more]
gi\|30580500\|sp\|Q9P5Z8.1\|RUXF_NEUCR	1.689e-28	52.38	RecName: Full=Probable small nuclear ribonucleopro...	[more]
gi\|74856500\|sp\|Q54XP2.1\|RUXF_DICDI	3.071e-28	62.34	RecName: Full=Small nuclear ribonucleoprotein F; S...	[more]
gi\|1711405\|sp\|P54999.1\|RUXF_YEAST	2.581e-23	59.15	RecName: Full=Small nuclear ribonucleoprotein F; S...	[more]
gi\|189028837\|sp\|A6R363.1\|LSM6_AJECN	5.722e-19	55.22	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|10720076\|sp\|Q9UUI1.1\|LSM6_SCHPO	6.566e-18	44.00	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]

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BLAST of EMLSAG00000003825 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 20


Match Name	E-value	Identity	Description
EAA07677.2	4.388e-47	77.65	AGAP002658-PA [Anopheles gambiae str. PEST]	[more]
gb\|EEC17272.1\|	1.074e-45	80.00	membrane-associated protein, putative [Ixodes scap...	[more]
AAF58559.2	2.492e-45	76.47	small ribonucleoprotein particle protein SmF [Dros...	[more]
gb\|EEC12230.1\|	4.138e-45	82.93	membrane-associated protein, putative, partial [Ix...	[more]
gb\|EFA04291.1\|	4.314e-45	84.71	Small nuclear ribonucleoprotein F-like Protein [Tr...	[more]
XP_016770018.1	8.520e-45	87.84	PREDICTED: small nuclear ribonucleoprotein F [Apis...	[more]
XP_003250168.1	8.520e-45	87.84	PREDICTED: small nuclear ribonucleoprotein F [Apis...	[more]
EFX89371.1	4.721e-44	90.14	hypothetical protein DAPPUDRAFT_220519 [Daphnia pu...	[more]
EEB11893.1	1.081e-42	86.49	membrane-associated protein, putative [Pediculus h...	[more]
gb\|KPM04657.1\|	2.348e-42	75.29	small nuclear ribonucleoprotein F-like protein [Sa...	[more]

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BLAST of EMLSAG00000003825 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25


Match Name	E-value	Identity	Description
gi\|290561351\|gb\|ADD38076.1\|	3.626e-57	100.00	Small nuclear ribonucleoprotein F [Lepeophtheirus ...	[more]
gi\|225709496\|gb\|ACO10594.1\|	2.796e-56	97.67	Small nuclear ribonucleoprotein F [Caligus rogercr...	[more]
gi\|780670960\|ref\|XP_011695222.1\|	8.468e-48	83.53	PREDICTED: small nuclear ribonucleoprotein F [Wasm...	[more]
gi\|751200252\|ref\|XP_011161241.1\|	1.806e-47	83.53	PREDICTED: small nuclear ribonucleoprotein F [Sole...	[more]
gi\|795028574\|ref\|XP_011862660.1\|	2.623e-47	82.35	PREDICTED: small nuclear ribonucleoprotein F [Voll...	[more]
gi\|1131310656\|gb\|JAV05688.1\|	3.127e-47	82.35	putative small nuclear ribonucleoprotein snrnp smf...	[more]
gi\|815817467\|ref\|XP_012229861.1\|	3.162e-47	82.35	PREDICTED: small nuclear ribonucleoprotein F [Line...	[more]
gi\|759082710\|ref\|XP_011351243.1\|	6.742e-47	82.35	PREDICTED: small nuclear ribonucleoprotein F [Cera...	[more]
gi\|752867320\|ref\|XP_011250682.1\|	7.124e-47	82.35	PREDICTED: small nuclear ribonucleoprotein F [Camp...	[more]
gi\|746830335\|ref\|XP_011064815.1\|	9.582e-47	82.35	PREDICTED: small nuclear ribonucleoprotein F [Acro...	[more]

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BLAST of EMLSAG00000003825 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 3


Match Name	E-value	Identity	Description
maker-scaffold1091_size63258-snap-gene-0.13	3.566e-49	82.72	protein:Tk11567 transcript:maker-scaffold1091_size...	[more]
snap_masked-scaffold3458_size8557-processed-gene-0.1	4.946e-37	84.13	protein:Tk10843 transcript:snap_masked-scaffold345...	[more]
snap_masked-scaffold548_size139981-processed-gene-0.4	5.936e-20	50.00	protein:Tk08558 transcript:snap_masked-scaffold548...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s206	supercontig	LSalAtl2s206:256317..256577 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	snap-LSalAtl2s206-processed-gene-2.31
Biotype	protein_coding
Evidence	IEA
Note	Small nuclear ribonucleoprotein F

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000003825 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000003825	EMLSAT00000003825-699672	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s206:256317..256577-

gene from alignment at LSalAtl2s206:256317..256577-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000003825-686591 ID=EMLSAG00000003825-686591|Name=EMLSAG00000003825|organism=Lepeophtheirus salmonis|type=gene|length=261bp|location=Sequence derived from alignment at LSalAtl2s206:256317..256577- (Lepeophtheirus salmonis)
ATGGCTATGCCAATCAATCCCAAACCTTTTTTGAACGAGCTCACAGGAAA
GGCTGTGATGGTCAAACTCAAGTGGGGTCATGAGTATAAAGGCTACTTGG
TCTCCACGGATGGATACATGAATGTTCAATTGGCCAACACAGAGGAATAC
ATCGATGGAAATTGCACAGGAACCCTGGGAGAAGTCCTTGTACGATGTAA
CAATGTTCTTTATATTCGAGGAGTGCAAGAGGATGACGAAGAAGGGGAGA
CGAGGGAATGA

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