EMLSAG00000003994, EMLSAG00000003994-686760 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003994
Unique NameEMLSAG00000003994-686760
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592919333|gb|GAXK01039042.1| (TSA: Calanus finmarchicus comp1178872_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 8.565e-1
Identity = 24/70 (34.29%), Postives = 36/70 (51.43%), Query Frame = 0 
Query:    1 MIYQKTKYILCILGGILQVGNFQEAP--TTIPIQMNDPVP----PLNPCKSKPCQNGICSIDYENSLIEV 64
            +I  ++KYIL + GG LQ+G  +E P  +   I M+  V     P+  CK    +NG  +ID+    I V
Sbjct:  772 LIELQSKYILIVEGGALQIGT-EEEPYDSKAIITMHGNVRCTEMPIFGCKVLGVRNG--TIDFHGEYIPV 972
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BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592889308|gb|GAXK01069067.1| (TSA: Calanus finmarchicus comp2496085_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.206e+0
Identity = 22/54 (40.74%), Postives = 26/54 (48.15%), Query Frame = 0 
Query:    5 KTKYILC--ILGGILQVGNFQEAPTTIPIQMNDP-VPPLNPCKSKPCQNGICSI 55
            +TK I+   +L  I    N      TIP Q NDP  PP +P  S PCQ G   I
Sbjct:   83 RTKEIMVQQMLHEIANRRNPGSPSLTIPTQPNDPKTPPASPLGS-PCQRGYLDI 241
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BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592938193|gb|GAXK01020360.1| (TSA: Calanus finmarchicus comp12693_c4_seq5 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.323e+0
Identity = 23/69 (33.33%), Postives = 35/69 (50.72%), Query Frame = 0 
Query:    1 MIYQKTKYILCILGGILQVGNFQEA-PTTIPIQMNDPVP----PLNPCKSKPCQNGICSIDYENSLIEV 64
            +I  ++KYIL + GG LQ+G  +E   +   I M+  V     P+  CK    +NG  +ID+    I V
Sbjct: 2795 LIELQSKYILIVEGGALQIGTEEEPYDSKAIITMHGNVRCTEMPIFGCKVLGVRNG--TIDFHGEYIPV 2995
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BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592938194|gb|GAXK01020359.1| (TSA: Calanus finmarchicus comp12693_c4_seq4 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.345e+0
Identity = 23/69 (33.33%), Postives = 35/69 (50.72%), Query Frame = 0 
Query:    1 MIYQKTKYILCILGGILQVGNFQEA-PTTIPIQMNDPVP----PLNPCKSKPCQNGICSIDYENSLIEV 64
            +I  ++KYIL + GG LQ+G  +E   +   I M+  V     P+  CK    +NG  +ID+    I V
Sbjct: 2795 LIELQSKYILIVEGGALQIGTEEEPYDSKAIITMHGNVRCTEMPIFGCKVLGVRNG--TIDFHGEYIPV 2995
[Close]
BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592938195|gb|GAXK01020358.1| (TSA: Calanus finmarchicus comp12693_c4_seq3 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.345e+0
Identity = 23/69 (33.33%), Postives = 35/69 (50.72%), Query Frame = 0 
Query:    1 MIYQKTKYILCILGGILQVGNFQEA-PTTIPIQMNDPVP----PLNPCKSKPCQNGICSIDYENSLIEV 64
            +I  ++KYIL + GG LQ+G  +E   +   I M+  V     P+  CK    +NG  +ID+    I V
Sbjct: 2795 LIELQSKYILIVEGGALQIGTEEEPYDSKAIITMHGNVRCTEMPIFGCKVLGVRNG--TIDFHGEYIPV 2995
[Close]
BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592938196|gb|GAXK01020357.1| (TSA: Calanus finmarchicus comp12693_c4_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.347e+0
Identity = 23/69 (33.33%), Postives = 35/69 (50.72%), Query Frame = 0 
Query:    1 MIYQKTKYILCILGGILQVGNFQEA-PTTIPIQMNDPVP----PLNPCKSKPCQNGICSIDYENSLIEV 64
            +I  ++KYIL + GG LQ+G  +E   +   I M+  V     P+  CK    +NG  +ID+    I V
Sbjct: 2795 LIELQSKYILIVEGGALQIGTEEEPYDSKAIITMHGNVRCTEMPIFGCKVLGVRNG--TIDFHGEYIPV 2995
[Close]
BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592938197|gb|GAXK01020356.1| (TSA: Calanus finmarchicus comp12693_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.347e+0
Identity = 23/69 (33.33%), Postives = 35/69 (50.72%), Query Frame = 0 
Query:    1 MIYQKTKYILCILGGILQVGNFQEA-PTTIPIQMNDPVP----PLNPCKSKPCQNGICSIDYENSLIEV 64
            +I  ++KYIL + GG LQ+G  +E   +   I M+  V     P+  CK    +NG  +ID+    I V
Sbjct: 2795 LIELQSKYILIVEGGALQIGTEEEPYDSKAIITMHGNVRCTEMPIFGCKVLGVRNG--TIDFHGEYIPV 2995
[Close]
BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592783288|gb|GAXK01171280.1| (TSA: Calanus finmarchicus comp62613_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.135e+0
Identity = 9/26 (34.62%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:   37 VPPLNPCKSKPCQNGICSIDYENSLI 62
            +PP+N   ++PC N +  I Y ++L+
Sbjct:  157 IPPVNIAITEPCTNSLVWIRYTDTLV 234
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BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592825351|gb|GAXK01129838.1| (TSA: Calanus finmarchicus comp70730_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.660e+0
Identity = 17/38 (44.74%), Postives = 21/38 (55.26%), Query Frame = 0 
Query:   14 GGILQVGNFQEAPTTIPIQMNDPVPPLNPCKSKPCQNG 51
            GG+LQVGNF   P   P+     VP L+ C+  P Q G
Sbjct:  280 GGVLQVGNF---PNWRPV-F*ARVPVLHKCRGSPHQLG 381
[Close]
BLAST of EMLSAG00000003994 vs. C. finmarchicus
Match: gi|592825350|gb|GAXK01129839.1| (TSA: Calanus finmarchicus comp70730_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 3.723e+0
Identity = 17/38 (44.74%), Postives = 21/38 (55.26%), Query Frame = 0 
Query:   14 GGILQVGNFQEAPTTIPIQMNDPVPPLNPCKSKPCQNG 51
            GG+LQVGNF   P   P+     VP L+ C+  P Q G
Sbjct:  300 GGVLQVGNF---PNWRPV-F*ARVPVLHKCRGSPHQLG 401
[Close]
BLAST of EMLSAG00000003994 vs. L. salmonis peptides
Match: EMLSAP00000003994 (pep:novel supercontig:LSalAtl2s:LSalAtl2s213:493018:493464:-1 gene:EMLSAG00000003994 transcript:EMLSAT00000003994 description:"snap_masked-LSalAtl2s213-processed-gene-4.8")

HSP 1 Score: 134.806 bits (338), Expect = 9.751e-43
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 
Query:    1 MIYQKTKYILCILGGILQVGNFQEAPTTIPIQMNDPVPPLNPCKSKPCQNGICSIDYENSLIEVFK 66
            MIYQKTKYILCILGGILQVGNFQEAPTTIPIQMNDPVPPLNPCKSKPCQNGICSIDYENSLIEVFK
Sbjct:    1 MIYQKTKYILCILGGILQVGNFQEAPTTIPIQMNDPVPPLNPCKSKPCQNGICSIDYENSLIEVFK 66
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003994 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003994 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 22
Match NameE-valueIdentityDescription
gi|592919333|gb|GAXK01039042.1|8.565e-134.29TSA: Calanus finmarchicus comp1178872_c0_seq1 tran... [more]
gi|592889308|gb|GAXK01069067.1|1.206e+040.74TSA: Calanus finmarchicus comp2496085_c0_seq1 tran... [more]
gi|592938193|gb|GAXK01020360.1|1.323e+033.33TSA: Calanus finmarchicus comp12693_c4_seq5 transc... [more]
gi|592938194|gb|GAXK01020359.1|1.345e+033.33TSA: Calanus finmarchicus comp12693_c4_seq4 transc... [more]
gi|592938195|gb|GAXK01020358.1|1.345e+033.33TSA: Calanus finmarchicus comp12693_c4_seq3 transc... [more]
gi|592938196|gb|GAXK01020357.1|1.347e+033.33TSA: Calanus finmarchicus comp12693_c4_seq2 transc... [more]
gi|592938197|gb|GAXK01020356.1|1.347e+033.33TSA: Calanus finmarchicus comp12693_c4_seq1 transc... [more]
gi|592783288|gb|GAXK01171280.1|3.135e+034.62TSA: Calanus finmarchicus comp62613_c0_seq1 transc... [more]
gi|592825351|gb|GAXK01129838.1|3.660e+044.74TSA: Calanus finmarchicus comp70730_c1_seq2 transc... [more]
gi|592825350|gb|GAXK01129839.1|3.723e+044.74TSA: Calanus finmarchicus comp70730_c1_seq3 transc... [more]

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BLAST of EMLSAG00000003994 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000039949.751e-43100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s213:49301... [more]
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BLAST of EMLSAG00000003994 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003994 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003994 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003994 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s213supercontigLSalAtl2s213:493018..493464 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s213-processed-gene-4.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003994 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003994EMLSAT00000003994-699841Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s213:493018..493464-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003994-686760 ID=EMLSAG00000003994-686760|Name=EMLSAG00000003994|organism=Lepeophtheirus salmonis|type=gene|length=447bp|location=Sequence derived from alignment at LSalAtl2s213:493018..493464- (Lepeophtheirus salmonis)
ATGATCTATCAAAAGACTAAGTATATACTATGTATCCTTGGAGGCATTCT
ACAAGTAGGAAACTTTCAAGAGGCCCCTACAACCATTCCCATTCAAATGA
ATGATCCTGTTCCACCTTTGAATCCATGTAAATCCAARCCCTGCCAAAAT
GGTATATGTTCCATCGACTACGAAAATAGGTAAATTAGATATGAATAAAT
AATTTTGCAGAAATAACCACTTTTCCCATGACCTTGGAGTATGATTTGAT
TAACGATAATATGTCTATGGTATATAATATGTACGTGTATTGTATATGCT
ATAGTAACAAAACAAGAAAGGCTGAAATGCAATAATGAATTTTTAATGTC
TTAGCCTCTTAAATCCAATAAACGGAAATGTTTTCGATAAAATACACACA
TAATTATTGTAACGTTTTATTTAAGTTTGATTGAAGTATTTAAATAA
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