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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000004318 vs. L. salmonis peptides
Match: EMLSAP00000004318 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2277:10770:15645:-1 gene:EMLSAG00000004318 transcript:EMLSAT00000004318 description:"maker-LSalAtl2s2277-snap-gene-0.1") HSP 1 Score: 131.339 bits (329), Expect = 1.937e-41 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query: 1 MSTQISINKQDSFPFNILLGKPRIQIMESLRIYLTKPFNIYLQFKILHNLHFLPDDEESFLRLQN 65
MSTQISINKQDSFPFNILLGKPRIQIMESLRIYLTKPFNIYLQFKILHNLHFLPDDEESFLRLQN
Sbjct: 1 MSTQISINKQDSFPFNILLGKPRIQIMESLRIYLTKPFNIYLQFKILHNLHFLPDDEESFLRLQN 65
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004318 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of EMLSAG00000004318 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EMLSAP00000004318 | 1.937e-41 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s2277:1077... | [more] |
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s2277 | supercontig | LSalAtl2s2277:10770..15645 - |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Description | maker-LSalAtl2s2277-snap-gene-0.1 |
| Biotype | protein_coding |
| Evidence | IEA |
| Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s2277:10770..15645- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000004318-687084 ID=EMLSAG00000004318-687084|Name=EMLSAG00000004318|organism=Lepeophtheirus salmonis|type=gene|length=4876bp|location=Sequence derived from alignment at LSalAtl2s2277:10770..15645- (Lepeophtheirus salmonis)
ATGAGTACACAGATATCAATTAATAAGCAAGATTCATTTCCTTTTAACAT
ATTACTTGGAAAGCCACGTATTCAGATCATGGAATCTCTTCGAGTAAATT
AATACTAGTGAACTCTACTTAATCAACTTATGGTTAGAATATAATATATA
TTCTAAGTATATTTATGCGCAGTTATGAATACTCTTGTTCGGAGATTAAC
CTTCACACTTGTTTTCAAAATATACTAAGCATATTGTGAGAGGATAAAAA
AAATTACTACCCATCAGGAATATCACTGATACGGAATTTAACAAATAAAT
AATGTATTTTTAAATTGTTCTTTTTTGATCAAAATTGTAACAATGTCGAT
TTAAATGWATTCAAATTAATTCTGTGTTTGTAGTAAGTTTTGACAAATCT
GTGTATAATTACTCTCGAGTAATAAACAAATTCAAGAAGNNNTTTTAAGT
ATCCATTTTCCCCAATACATTGTATCAAAATCATTAAAAGATTAATGTAG
AATTTAAGTATGATTTACCTAAGTTTAGGAGCGTTCCTAGCTTACATCCT
TAGGGGGACTTCCAAAAATTATCAACAACACTTTAATACAATACTTATAT
GCATAAATTGTTTTCTCTTATTAAGATCTTGGAGAGATTTAACTTTGAAC
AGTCTCAGCACTTTATAAGAGCAAAAGTTTTTCCACTTTCCTAACCCGTT
GGTTCAAACCCCATCTTATGGCCATTGCATTGCGTAAGACTCCTCCGGTA
TAATAGGAGAGTATATTTGAAGGTTCTATGCATGCAGGCATACTCCATCC
CATATACTTAGTAAATGGAATGCTACTCCTTATCTGAAGACTCCATGCGT
GCTTAGTTTCAACATGTGGATAATATAATGTATTGTTATTGGACTACTAG
TGATGACATGATCCTAACCTTTTGATGGAAAGTAATTCCAATATAATATA
AATATGATACGTCGAAATGATACTACGCCAAATAGAAGTAAGCTAAAGAG
ATCTGCACTGAATAGAKCCCCGCTAAAAAGATGCACGCCCAAAAAAGCGC
GCCCAAATAAGTGTCCTCCACTATTTTGTAATATTTTGAGGTTTATTTTA
TAATATTGTAAAAAATTATGGTAACATATAAACGATATTTGAGACATTTA
AGATAAAGAACAGAATAGATATTTTTTATTTACTTTAAAGTGTTTTAAAT
GATGTATTATATGCATTCATTAGATGAATGATTTAAAGTAAAATCCAAAA
AACAAGGGTCTTCAAGACTTATTTTCATCAATTTCATCAAGAAAAATAGC
TGGATTGAGTTACAGATATAAAATTTCACTTTTTAGTTTTTCAATAATAG
GATATTAAAGATGCAAATCAAACAATACAAGTCAAATGAAAAGAAAGTGT
AAATTTGCCATGAAATAGTTCATATATGAAGTTGTAAAGCCAGATAGATG
TACAACCCCNGCCTTTACACTGTTGAATCGTTAGGAGTCAAGCACCAAAA
ATCATATTGGATTTAAAGTTGGACATGATGATTCCAAATATATATAGACA
CTAGAAAATATTGAAGTTGATTTATACAAAATGATGTGGGCCAAAAAAAA
ATATTTATAGTTGTAATTAATAAATTATCAATTGGAATATATTTAGTTAT
TGCCAGTTTATTATAATATTTGTAGAAGAATAATTATATGTTGTACATAA
GAATTTGTTTCATTATAAAATAAAAAGTAATATTTTTGTCCTTTTTTAGC
TGTTATTCCTTCGTGTACTTTTAAGTACGATTTTATTTCTTGTTTTAATA
GAAAATCAAGAAAAATATACCATATTTATTTACAGGCCTAATTCTAGCGC
GTACTTTTAATTACGCGGCCAGTATGTTTACATCAGGGGCTAGAATGAAA
TATCWTTTTTACTATCCATATTTAGATAAAAAAGAAAAACATATCTAAGT
ATTAACGCTGAAATTCAAATATAAGGGTTCGATGGAAGTAATGGGTTAAA
AGTAGTTTTTTCATTACAAACATGTGAATTCTCTTGTTTTTTATTATAAT
TATAATGCCACACCAATGTTACATGCAAAAATGTGTCCTTTAATATGGTT
GGGGTAATAAGTTTGTGGACAAAAATGGTTGGGTTATATCGTTGCCTTGT
AATATCGTTGTATTCATAAATTATGGTTGGACAAAAACATTGTGGGTAAT
GTCATCTTATTGAGTAATTTCATTGAAAGACAATATTATCTTGTGCAATT
TTGTTACAATTTATGTTACATTCTGACTTTCATATTGTGGCCCTGACTTT
TAGTTTATACCTCCTTTAAAGAGGAAATTGTTGTCTAACACATCAAGAGC
CATTTTACAGCAGGATGGTGCCATGCTCATCACTCCAAAAAGGCACAAAA
TTGGGTTTTATGCAACTTGGATTCCTGCCAACATTCCTGATTTGTCTCCC
ATTGAAAATTTGTGAGCCTCAATGAACTCAATGAAAATGCCCCAGCAACT
TCCATGTATGAATTAAAAAAACACTGACAAAAGCTTGGGACAAAATTTCT
CCAGATACTTTGAATAATCTGTATGAAGGGATGCCAGAACACATAAAAAT
GTATTAAGCTTAAAGGTCGTCATATTTGGAAGTAAATAAAGTGTTTCACC
AAAAAAATCACTTGTTTAAAAAAAAACACCATCAATTTTGGACATACTTT
AATCCAAATTGGCTATCAGATTTTGACTGCCCAAAAAGATGCAATTCGTG
TTGTAAGGACCTTAAACTATGTTTCTAATTGACTACATTTCTTAAGAGGG
GAATATTCTCATTATTCAATAAAATTACAACATTAAAATGTCATAAGATT
GAAAATGCCCAATCCTAAAAAATCCTATGAGATAAAATTTACAACTTCTT
GTAAATTTCTACATTTATACTTCTTTTATTTGTAGTAATTGAGGAGAATT
TTGTTTATTTCTTCCTGTCTCCTGATACCTTACATTTGTCATTTAAAGAT
TAACTTCGAATAGAACAAGCGTAAGTGAAGTACTTCAAAGTTGTATACTT
GTTTAACGTGATGATTTTGTAATTGCCTCTAGTCTCTGATTAATGACTAA
CGATCTTTTTTTTTCACTTTTGGATTTTTTCAAGTTTTTTCTGGAAATTT
TATATGATTGATGTGTCCCATAGANTTTCAGAGATCGTTGATAGATGTAC
AAACAAATGTATATCAATGTGTTATAAGTCTAAAATAAATGAAAATACAC
CTTTAACGGATGATTTGATATTCAACTCTATGAAGAAGTTTTGGATCTTA
TTGAAGACCTTATCCCTTTGTTGCTCCTTTAGGATCATACATGTTGAAAG
GGATAATTTTGAACAAGAATGTTTATTTCTGCCATTTATTTTCGCATTCC
TTCTTTAATTTTTATTATTACACGATTTCATTTATGTCTGGTTTCGTCGT
GAAGAAACCTGGACCTCCTTTGCAGAGGAAAATGTTGTTTTACACATCAA
GAGCAATTTTCCAGCGGGATACTCACCACTNACAAAAAGGCACAAAAGGG
GTATATAGGCAACTTAGATTCCTGCCAACATTCCTGATTTGTCTCCCATT
GACAATTTGTGATCCTTGTTGAACATTTTCGTTATTCAATAATTACTACA
TCATAATGTCATAAGATTGAAAATGCACAACACTAAAAAGTACAATGACA
TAAAATTTACAACTTCTTGTAAATTCCTACATTTATACTTCTTTCATTTA
TAGTAATTGAGTAGCATTTTGTTTATTTCTTCTTGTCTCCTGATAACTTA
CATGTGTCATTCAAAGAATAACTACCAACAACACAAGAGTAAGTGAAGTA
CTTTAATGTTGTGTACTTGTTTATCGTGATGATTTTGTAATTGACTGGAG
TCTCGGATTAATGACTGACGATCCTTTTTATTATACTGAGATTATTTTTT
AACTTAACATATTAATTTTTTTTAATGATCTATAGATTTATCTAACCAAG
CCCTTTAATATTTATTTGCAGTAAGTAATCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTCATTTGTTTT
CCCATCCTAAGAAAAGATAAGATTTAATCAATTTATTATTATTTTTTAGG
TTCAAAATCCTACACAATCTCCACTTTCTTCCTGACGACGAAGAGTCTTT
TCTAAGGTATTTTGATTTTTTTGTGTATTCACTATTTTAATATTAAATTT
GATGAAATTTGTAAATCCAACGCTGAATTAAGTTGATGTTAACTTATAAA
TCGAGCTTTTTGACACTGAAAATTTCATTATTTTATTCACAACTCAAACA
TTTTCTTCTCCAAATATTAATGTATGACTATTTTATTCTTAGATAATATG
GATTTGCTTATCATTTCTCAATCTGGGAGCCCAAGTCTAAGAACTTAACC
TATAGGAGGTGTGTATATTATTTCTTAATGGATTTATTCAATTTTAAATA
CTTCTGATGTGTACATAGTTCATCTGAATACGTTTGGATCTACATATATT
TGATGACAAAGCAATCCAAATTAGTCTTTCGCTCCTATCTAAATTATCTT
TCATTATTTTGATTTCAGATTTGTCAATTTAATAGATCTAATTCTTGAAT
ATTTTGTTTTTAGGCTTCAAAATTGA back to top
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