EMLSAG00000004431, EMLSAG00000004431-687197 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:SmD3 "Small ribonucleoprotein particle protein SmD3" species:7227 "Drosophila melanogaster" [GO:0007417 "central nervous system development" evidence=IMP] [GO:0048542 "lymph gland development" evidence=IMP] [GO:0007422 "peripheral nervous system development" evidence=NAS;IMP] [GO:0030182 "neuron differentiation" evidence=IMP] [GO:0007517 "muscle organ development" evidence=IMP] [GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS;NAS;TAS] [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus" evidence=NAS] [GO:0007052 "mitotic spindle organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0007052 GO:GO:0030182 GO:GO:0007422 GO:GO:0007417 GO:GO:0007517 GO:GO:0007067 GO:GO:0048542 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 GO:GO:0045451 GO:GO:0045495 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088 EMBL:AF038598 EMBL:AY113465 RefSeq:NP_725106.1 UniGene:Dm.19912 ProteinModelPortal:O44437 SMR:O44437 BioGrid:62087 DIP:DIP-19470N IntAct:O44437 MINT:MINT-306370 STRING:7227.FBpp0087094 PaxDb:O44437 PRIDE:O44437 EnsemblMetazoa:FBtr0087986 GeneID:36306 KEGG:dme:Dmel_CG8427 CTD:36306 FlyBase:FBgn0023167 InParanoid:O44437 OMA:IMRANAR OrthoDB:EOG7VTDQF PhylomeDB:O44437 GenomeRNAi:36306 NextBio:797837 PRO:PR:O44437 Bgee:O44437 Uniprot:O44437) HSP 1 Score: 175.252 bits (443), Expect = 8.520e-55 Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMF-KNMGRGRGSAPAXAGRGKXAILREQA 109
MSIGVPIKVLHEAEGHI+TCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG + LEN+YIRGSKIRF+ILPDMLKNAPMF K G+G G AGRGK AILR QA
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGT---AGRGKAAILRAQA 107
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:Snrpd3 "Protein Snrpd3" species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA] RGD:1597573 INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473988 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 GO:GO:0071208 InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088 OMA:IMRANAR OrthoDB:EOG7VTDQF CTD:6634 EMBL:AABR06100339 EMBL:AABR06100340 EMBL:AABR06100341 RefSeq:XP_001079870.1 RefSeq:XP_003751996.1 Ensembl:ENSRNOT00000075517 GeneID:687711 KEGG:rno:687711 Uniprot:M0R907) HSP 1 Score: 173.711 bits (439), Expect = 1.782e-54 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:Snrpd3 "small nuclear ribonucleoprotein D3" species:10116 "Rattus norvegicus" [GO:0000387 "spliceosomal snRNP assembly" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005683 "U7 snRNP" evidence=IEA;ISO] [GO:0005685 "U1 snRNP" evidence=ISO] [GO:0005687 "U4 snRNP" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=ISO] [GO:0019899 "enzyme binding" evidence=IEA;ISO] [GO:0034709 "methylosome" evidence=ISO] [GO:0034715 "pICln-Sm protein complex" evidence=ISO] [GO:0034719 "SMN-Sm protein complex" evidence=ISO] [GO:0044822 "poly(A) RNA binding" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] RGD:1597573 INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473988 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 GO:GO:0071208 InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088 OMA:IMRANAR OrthoDB:EOG7VTDQF CTD:6634 EMBL:AABR06100339 EMBL:AABR06100340 EMBL:AABR06100341 RefSeq:XP_001079870.1 RefSeq:XP_003751996.1 Ensembl:ENSRNOT00000075517 GeneID:687711 KEGG:rno:687711 Uniprot:M0R907) HSP 1 Score: 173.711 bits (439), Expect = 1.782e-54 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:Snrpd3 "small nuclear ribonucleoprotein D3" species:10090 "Mus musculus" [GO:0000387 "spliceosomal snRNP assembly" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005685 "U1 snRNP" evidence=ISO] [GO:0005687 "U4 snRNP" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0019012 "virion" evidence=IEA] [GO:0019013 "viral nucleocapsid" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0034709 "methylosome" evidence=ISO] [GO:0034715 "pICln-Sm protein complex" evidence=ISO] [GO:0034719 "SMN-Sm protein complex" evidence=ISO] [GO:0044822 "poly(A) RNA binding" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO] [GO:0071208 "histone pre-mRNA DCP binding" evidence=IDA] MGI:MGI:1914582 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0034709 GO:GO:0000387 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0034719 GO:GO:0005689 GO:GO:0005687 Pfam:PF01423 GO:GO:0034715 GO:GO:0005685 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 GO:GO:0071208 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 HOGENOM:HOG000182712 KO:K11088 OMA:IMRANAR OrthoDB:EOG7VTDQF CTD:6634 HOVERGEN:HBG105305 TreeFam:TF354302 NextBio:25845 EMBL:AK005341 EMBL:AK006692 EMBL:AK019453 EMBL:AK160321 RefSeq:NP_080371.1 UniGene:Mm.392843 UniGene:Mm.45151 ProteinModelPortal:P62320 SMR:P62320 BioGrid:212112 IntAct:P62320 MINT:MINT-124943 STRING:10090.ENSMUSP00000020397 PhosphoSite:P62320 PaxDb:P62320 PRIDE:P62320 Ensembl:ENSMUST00000020397 GeneID:67332 KEGG:mmu:67332 UCSC:uc007fqm.1 InParanoid:P62320 ChiTaRS:SNRPD3 PRO:PR:P62320 Bgee:P62320 CleanEx:MM_SNRPD3 Genevestigator:P62320 Uniprot:P62320) HSP 1 Score: 173.711 bits (439), Expect = 1.782e-54 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:snrpd3 "Small nuclear ribonucleoprotein Sm D3" species:8355 "Xenopus laevis" [GO:0000387 "spliceosomal snRNP assembly" evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0005687 "U4 snRNP" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0034709 "methylosome" evidence=ISS] [GO:0034715 "pICln-Sm protein complex" evidence=ISS] [GO:0034719 "SMN-Sm protein complex" evidence=ISS] [GO:0071208 "histone pre-mRNA DCP binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0034709 GO:GO:0000387 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0034719 GO:GO:0005687 Pfam:PF01423 GO:GO:0034715 GO:GO:0005685 InterPro:IPR006649 SMART:SM00651 GO:GO:0071208 InterPro:IPR027141 PANTHER:PTHR23338 KO:K11088 CTD:6634 HOVERGEN:HBG105305 EMBL:BC070616 RefSeq:NP_001084936.1 UniGene:Xl.75328 ProteinModelPortal:P62323 SMR:P62323 PRIDE:P62323 GeneID:431993 KEGG:xla:431993 Xenbase:XB-GENE-1014508 Uniprot:P62323) HSP 1 Score: 173.711 bits (439), Expect = 1.782e-54 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:SNRPD3 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 GO:GO:0071208 InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088 OMA:IMRANAR OrthoDB:EOG7VTDQF CTD:6634 TreeFam:TF354302 EMBL:FP476093 RefSeq:NP_001230355.1 RefSeq:XP_005670932.1 UniGene:Ssc.6651 ProteinModelPortal:F2Z4Y0 SMR:F2Z4Y0 PRIDE:F2Z4Y0 Ensembl:ENSSSCT00000011019 GeneID:100153480 KEGG:ssc:100153480 Uniprot:F2Z4Y0) HSP 1 Score: 173.711 bits (439), Expect = 1.782e-54 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:SNRPD3 "Small nuclear ribonucleoprotein Sm D3" species:9606 "Homo sapiens" [GO:0000387 "spliceosomal snRNP assembly" evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0005687 "U4 snRNP" evidence=IDA] [GO:0005689 "U12-type spliceosomal complex" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA;TAS] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS] [GO:0008334 "histone mRNA metabolic process" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0019899 "enzyme binding" evidence=IPI] [GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS] [GO:0034709 "methylosome" evidence=IDA] [GO:0034715 "pICln-Sm protein complex" evidence=IDA] [GO:0034719 "SMN-Sm protein complex" evidence=IDA] [GO:0044822 "poly(A) RNA binding" evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA] [GO:0071208 "histone pre-mRNA DCP binding" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 PDB:3VRI PDBsum:3VRI EMBL:CH471095 GO:GO:0034709 GO:GO:0000387 GO:GO:0034660 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 GO:GO:0034719 GO:GO:0005689 GO:GO:0005687 Pfam:PF01423 GO:GO:0034715 GO:GO:0008334 GO:GO:0005685 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 GO:GO:0071208 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338 PDB:1D3B PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:1D3B PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW HOGENOM:HOG000182712 KO:K11088 OMA:IMRANAR OrthoDB:EOG7VTDQF EMBL:U15009 EMBL:CR456583 EMBL:AB451249 EMBL:AB451373 EMBL:BC000457 EMBL:BC003150 RefSeq:NP_001265585.1 RefSeq:NP_004166.1 UniGene:Hs.356549 ProteinModelPortal:P62318 SMR:P62318 BioGrid:112518 DIP:DIP-31216N IntAct:P62318 MINT:MINT-5002679 STRING:9606.ENSP00000215829 PhosphoSite:P62318 DMDM:51338667 PaxDb:P62318 PeptideAtlas:P62318 PRIDE:P62318 DNASU:6634 Ensembl:ENST00000215829 Ensembl:ENST00000404603 GeneID:6634 KEGG:hsa:6634 UCSC:uc003aam.1 CTD:6634 GeneCards:GC22P024951 HGNC:HGNC:11160 HPA:HPA001170 MIM:601062 neXtProt:NX_P62318 PharmGKB:PA36001 HOVERGEN:HBG105305 InParanoid:P62318 PhylomeDB:P62318 TreeFam:TF354302 EvolutionaryTrace:P62318 GeneWiki:SNRPD3 GenomeRNAi:6634 NextBio:25845 PRO:PR:P62318 ArrayExpress:P62318 Bgee:P62318 CleanEx:HS_SNRPD3 Genevestigator:P62318 Uniprot:P62318) HSP 1 Score: 173.711 bits (439), Expect = 1.782e-54 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:SNRPD3 "Uncharacterized protein" species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 GO:GO:0071208 InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 OMA:IMRANAR OrthoDB:EOG7VTDQF TreeFam:TF354302 EMBL:DAAA02045688 ProteinModelPortal:F1MZ00 SMR:F1MZ00 PRIDE:F1MZ00 Ensembl:ENSBTAT00000028330 Uniprot:F1MZ00) HSP 1 Score: 173.711 bits (439), Expect = 1.782e-54 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:SNRPD3 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 GO:GO:0005683 GO:GO:0071208 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 HOGENOM:HOG000182712 KO:K11088 OMA:IMRANAR OrthoDB:EOG7VTDQF CTD:6634 HOVERGEN:HBG105305 TreeFam:TF354302 EMBL:AADN03007053 EMBL:AJ719876 RefSeq:NP_001007839.1 UniGene:Gga.8376 ProteinModelPortal:Q5ZL58 SMR:Q5ZL58 STRING:9031.ENSGALP00000010633 PRIDE:Q5ZL58 Ensembl:ENSGALT00000010647 GeneID:416947 KEGG:gga:416947 InParanoid:Q5ZL58 NextBio:20820335 PRO:PR:Q5ZL58 Uniprot:Q5ZL58) HSP 1 Score: 173.711 bits (439), Expect = 1.782e-54 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. GO
Match: - (symbol:SNRPD3 "Small nuclear ribonucleoprotein Sm D3" species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0019013 "viral nucleocapsid" evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] INTERPRO:IPR001163 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0019013 EMBL:AP000356 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338 HOGENOM:HOG000182712 KO:K11088 UniGene:Hs.356549 GeneID:6634 KEGG:hsa:6634 CTD:6634 HGNC:HGNC:11160 HOVERGEN:HBG105305 EMBL:AK296173 RefSeq:XP_005261776.1 ProteinModelPortal:B4DJP7 SMR:B4DJP7 PRIDE:B4DJP7 Ensembl:ENST00000402849 UCSC:uc011aju.2 NextBio:35472586 ArrayExpress:B4DJP7 Uniprot:B4DJP7) HSP 1 Score: 171.014 bits (432), Expect = 2.102e-53 Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQ 108
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQ 106
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592891609|gb|GAXK01066766.1| (TSA: Calanus finmarchicus comp5249_c0_seq4 transcribed RNA sequence) HSP 1 Score: 159.844 bits (403), Expect = 2.244e-49 Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 3 IGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM 86
IGVP+KVLHEAEGHIVT ET GEVYRG+LIEAEDNMN QM+SV+VT+RDG V+QLENIYIRGSKIRFMILPDMLKNAPMFKNM
Sbjct: 103 IGVPVKVLHEAEGHIVTVETTTGEVYRGKLIEAEDNMNSQMASVTVTYRDGRVAQLENIYIRGSKIRFMILPDMLKNAPMFKNM 354
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592891610|gb|GAXK01066765.1| (TSA: Calanus finmarchicus comp5249_c0_seq3 transcribed RNA sequence) HSP 1 Score: 159.844 bits (403), Expect = 3.943e-49 Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 3 IGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM 86
IGVPIKVLHEAEGHIVT ET GEVYRG+LIEAEDNMN QM+SV+VT+RDG V+QLENIYIRGSKIRFMILPDMLKNAPMFKNM
Sbjct: 103 IGVPIKVLHEAEGHIVTVETTTGEVYRGKLIEAEDNMNSQMASVTVTYRDGRVAQLENIYIRGSKIRFMILPDMLKNAPMFKNM 354
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592891606|gb|GAXK01066769.1| (TSA: Calanus finmarchicus comp5249_c1_seq2 transcribed RNA sequence) HSP 1 Score: 159.844 bits (403), Expect = 1.685e-48 Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 3 IGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM 86
IGVP+KVLHEAEGHIVT ET GEVYRG+LIEAEDNMN QM+SV+VT+RDG V+QLENIYIRGSKIRFMILPDMLKNAPMFKNM
Sbjct: 44 IGVPVKVLHEAEGHIVTVETTTGEVYRGKLIEAEDNMNSQMASVTVTYRDGRVAQLENIYIRGSKIRFMILPDMLKNAPMFKNM 295
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592891611|gb|GAXK01066764.1| (TSA: Calanus finmarchicus comp5249_c0_seq2 transcribed RNA sequence) HSP 1 Score: 159.844 bits (403), Expect = 1.685e-48 Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 3 IGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM 86
IGVP+KVLHEAEGHIVT ET GEVYRG+LIEAEDNMN QM+SV+VT+RDG V+QLENIYIRGSKIRFMILPDMLKNAPMFKNM
Sbjct: 334 IGVPVKVLHEAEGHIVTVETTTGEVYRGKLIEAEDNMNSQMASVTVTYRDGRVAQLENIYIRGSKIRFMILPDMLKNAPMFKNM 585
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592891607|gb|GAXK01066768.1| (TSA: Calanus finmarchicus comp5249_c1_seq1 transcribed RNA sequence) HSP 1 Score: 159.844 bits (403), Expect = 2.869e-48 Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 3 IGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM 86
IGVPIKVLHEAEGHIVT ET GEVYRG+LIEAEDNMN QM+SV+VT+RDG V+QLENIYIRGSKIRFMILPDMLKNAPMFKNM
Sbjct: 101 IGVPIKVLHEAEGHIVTVETTTGEVYRGKLIEAEDNMNSQMASVTVTYRDGRVAQLENIYIRGSKIRFMILPDMLKNAPMFKNM 352
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592891612|gb|GAXK01066763.1| (TSA: Calanus finmarchicus comp5249_c0_seq1 transcribed RNA sequence) HSP 1 Score: 159.844 bits (403), Expect = 2.869e-48 Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0
Query: 3 IGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM 86
IGVPIKVLHEAEGHIVT ET GEVYRG+LIEAEDNMN QM+SV+VT+RDG V+QLENIYIRGSKIRFMILPDMLKNAPMFKNM
Sbjct: 334 IGVPIKVLHEAEGHIVTVETTTGEVYRGKLIEAEDNMNSQMASVTVTYRDGRVAQLENIYIRGSKIRFMILPDMLKNAPMFKNM 585
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592891604|gb|GAXK01066771.1| (TSA: Calanus finmarchicus comp5249_c3_seq2 transcribed RNA sequence) HSP 1 Score: 65.4698 bits (158), Expect = 2.223e-13 Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query: 57 QLENIYIRGSKIRFMILPDMLKNAPMFKNM 86
QLENIYIRGSKIRFMILPDMLKNAPMFKNM
Sbjct: 1 QLENIYIRGSKIRFMILPDMLKNAPMFKNM 90
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592766292|gb|GAXK01188276.1| (TSA: Calanus finmarchicus comp10354_c0_seq2 transcribed RNA sequence) HSP 1 Score: 55.0694 bits (131), Expect = 2.257e-9 Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 0
Query: 5 VPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDG-HVSQLENIYIRGSKIRFMILPD 75
+P+ +L A+ H + E NGE Y G L+ ++ MN + V T RDG ++ YIRGS I+++ +PD
Sbjct: 50 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSNIKYLRIPD 265
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592766293|gb|GAXK01188275.1| (TSA: Calanus finmarchicus comp10354_c0_seq1 transcribed RNA sequence) HSP 1 Score: 55.0694 bits (131), Expect = 2.543e-9 Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 0
Query: 5 VPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDG-HVSQLENIYIRGSKIRFMILPD 75
+P+ +L A+ H + E NGE Y G L+ ++ MN + V T RDG ++ YIRGS I+++ +PD
Sbjct: 85 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSNIKYLRIPD 300
BLAST of EMLSAG00000004431 vs. C. finmarchicus
Match: gi|592818578|gb|GAXK01135990.1| (TSA: Calanus finmarchicus comp2851986_c0_seq1 transcribed RNA sequence) HSP 1 Score: 48.521 bits (114), Expect = 3.084e-7 Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 0
Query: 26 EVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAP 81
+VYR LI+AED+MN M+SV++T+R V QLEN RGSK ILP+ + P
Sbjct: 106 QVYRW*LIDAEDSMNNHMASVTITYRSCRVVQLEN---RGSK----ILPEECRRMP 252
BLAST of EMLSAG00000004431 vs. L. salmonis peptides
Match: EMLSAP00000004431 (pep:novel supercontig:LSalAtl2s:LSalAtl2s231:23735:24214:-1 gene:EMLSAG00000004431 transcript:EMLSAT00000004431 description:"maker-LSalAtl2s231-augustus-gene-0.34") HSP 1 Score: 275.404 bits (703), Expect = 7.058e-96 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGLPGSAASGRGRSWAPRGR 138
MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGLPGSAASGRGRSWAPRGR
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGLPGSAASGRGRSWAPRGR 138
BLAST of EMLSAG00000004431 vs. L. salmonis peptides
Match: EMLSAP00000001795 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1306:48190:49688:1 gene:EMLSAG00000001795 transcript:EMLSAT00000001795 description:"maker-LSalAtl2s1306-augustus-gene-0.33") HSP 1 Score: 56.225 bits (134), Expect = 4.265e-11 Identity = 30/85 (35.29%), Postives = 48/85 (56.47%), Query Frame = 0
Query: 5 VPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGH-VSQLENIYIRGSKIRFMILPD----MLKNAPMFK 84
+P+ +L A+ H + E NGE Y G L+ ++ MN + V T RDG +++ YIRGS I+++ +PD M+K+ M K
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNRMNISLKEVICTSRDGDRFWRMQECYIRGSTIKYLRIPDDVIEMVKDDVMTK 86
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|13124554|sp|O44437.1|SMD3_DROME (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 175.252 bits (443), Expect = 2.624e-56 Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMF-KNMGRGRGSAPAXAGRGKXAILREQA 109
MSIGVPIKVLHEAEGHI+TCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG + LEN+YIRGSKIRF+ILPDMLKNAPMF K G+G G AGRGK AILR QA
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGT---AGRGKAAILRAQA 107
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|51338667|sp|P62318.1|SMD3_HUMAN (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3 >gi|54039609|sp|P62323.1|SMD3_XENLA RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3 >gi|61246343|sp|P62320.1|SMD3_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 173.711 bits (439), Expect = 5.369e-56 Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRGSAPAXAGRGKXAILREQAA 110
MSIGVPIKVLHEAEGHIVTCET GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLE +YIRGSKIRF+ILPDMLKNAPM K+M + +GS AGRGK AIL+ Q A
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSG---AGRGKAAILKAQVA 108
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|21542463|sp|Q17348.2|SMD3_CAEEL (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 154.836 bits (390), Expect = 2.146e-48 Identity = 81/138 (58.70%), Postives = 97/138 (70.29%), Query Frame = 0
Query: 2 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXA-------GRGKXAILREQAARGRGRAGPPGL--PGSAASGRG 130
S+GVPIK+LHEAEGH+VT ET+ GEVYRG+L EAEDNMNCQ++ VT RDG QL+N++IRG+KIRFMILPDMLKNAPMFKN+GR + A GRG+ R R GR GP G+ PG A + RG
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRGTAFR----RPMGRGGPRGMSRPGGAPTFRG 136
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|75270415|sp|Q9S7E6.1|SMD3A_ARATH (RecName: Full=Small nuclear ribonucleoprotein SmD3a; Short=SmD3-a; AltName: Full=snRNP core protein D3-a) HSP 1 Score: 133.65 bits (335), Expect = 4.658e-40 Identity = 60/108 (55.56%), Postives = 87/108 (80.56%), Query Frame = 0
Query: 2 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRG-SAPAXAGRGKXAILREQ 108
S+G+P+K+LHE+ GHIV+ E +GE+YRG +IE EDN NCQ+ +++ T +DG VSQLE+++IRGS +RF+++PDMLKNAPMFK++ RG+G SA GRG+ A +R +
Sbjct: 4 SLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSLVRFLVIPDMLKNAPMFKDV-RGKGKSASLGVGRGRGAAMRAK 110
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|75264021|sp|Q9LM92.1|SMD3B_ARATH (RecName: Full=Small nuclear ribonucleoprotein SmD3b; Short=SmD3-b; AltName: Full=snRNP core protein D3-b) HSP 1 Score: 129.028 bits (323), Expect = 2.902e-38 Identity = 59/105 (56.19%), Postives = 83/105 (79.05%), Query Frame = 0
Query: 2 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNM-GRGRG-SAPAXAGRGKXAI 104
S+G+P+K+LHEA GHIVT E +GE+YRG +IE EDN NCQ+ ++ T +DG VSQLE+++IRGSK+RFM++PD+LK+APMFK + R +G S+ GRG+ A+
Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRGAM 108
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 125.561 bits (314), Expect = 2.075e-37 Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 0
Query: 7 IKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGR 99
IK+LHE +GHIVT E NG YRG+LIEAEDNMNCQM +SVT RDG VS L+ +YIRGS IRF+I+PDML+NAPMFK +G GR GR
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFK-VGPGRSVPLPTRGR 96
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|1173457|sp|P43321.1|SMD3_YEAST (RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3; AltName: Full=snRNP core protein D3) HSP 1 Score: 104.76 bits (260), Expect = 3.800e-29 Identity = 41/81 (50.62%), Postives = 64/81 (79.01%), Query Frame = 0
Query: 4 GVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFK 84
G+P+K+L+EA+GHIV+ E G YRG+L+E+ED+MN Q+ V T G V+ ++ I++RGS+I+F+++PD+LKNAP+FK
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFK 85
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE (RecName: Full=U6 snRNA-associated Sm-like protein LSm4) HSP 1 Score: 63.1586 bits (152), Expect = 1.962e-12 Identity = 36/115 (31.30%), Postives = 57/115 (49.57%), Query Frame = 0
Query: 5 VPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGH-VSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGP 118
+P+ +L A+ H + E NGE Y G L+ ++ MN + V T RDG ++ YIRGS I+++ +PD + + ++RE+AA+GRGR GP
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID------------------------MVREEAAKGRGRGGP 92
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|12230258|sp|Q43582.1|LSM4_TOBAC (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein 10; Short=GRP 10) HSP 1 Score: 59.3066 bits (142), Expect = 7.634e-11 Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = 0
Query: 5 VPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGH-VSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGR------GRGSAPAXAGRGKXAILREQAARGRG 114
+P+ +L A+GH + E NGE Y G L+ + MN + V T +DG ++ Y+RG+ I+++ +PD + + + R G G A A GR A+ R+ GRG
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRG 118
BLAST of EMLSAG00000004431 vs. SwissProt
Match: gi|74853183|sp|Q54KX4.1|LSM4_DICDI (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4) HSP 1 Score: 59.6918 bits (143), Expect = 8.738e-11 Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 0
Query: 5 VPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGH-VSQLENIYIRGSKIRFMILPD-----------MLKNAPMFKN-MGRGRGSAPAXAGRGKXAILREQAARGRG 114
+P+ +L +GH + E NGE Y G L+ ++ MN + +V T +D ++++ YIRG+ I+++ +PD L+ +N RGRG AGRG+ + + RGRG
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRG----DASGRGRG 120
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: gb|EFA05269.2| (Small nuclear ribonucleoprotein Sm D3-like Protein [Tribolium castaneum]) HSP 1 Score: 195.667 bits (496), Expect = 9.321e-65 Identity = 97/138 (70.29%), Postives = 109/138 (78.99%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGLPGSAASGRGRSWAPRGR 138
MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG V+QLEN+YIRGSKIRF+ILPDMLKNAPMFK + AGRGK AILR QAARGRGR P + G GRG +W G+
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQ-----TKAGTAGRGKSAILRAQAARGRGRGANPAVRG----GRGGAWQAPGQ 129
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: gb|KPM05062.1| (small nuclear ribonucleoprotein Sm D3-like protein [Sarcoptes scabiei]) HSP 1 Score: 188.348 bits (477), Expect = 3.349e-62 Identity = 91/115 (79.13%), Postives = 103/115 (89.57%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGR 115
MSIGVPIKVLHEAEGHI+TCETI GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLEN++IRGSKIRF+ILPDMLKNAPMFK M +G G+A A RGK AILR Q ARGRGR
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLENVFIRGSKIRFLILPDMLKNAPMFKKMVKG-GTA---ANRGKSAILRAQVARGRGR 111
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: gb|KFM65282.1| (Small nuclear ribonucleoprotein Sm D3, partial [Stegodyphus mimosarum]) HSP 1 Score: 185.652 bits (470), Expect = 5.076e-61 Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRA 116
MS+GVP+KVLHEAEGHIVT ET GEVYRG+L+EAEDNMNCQMS ++VT+RDG V+QLENIYIRGSKIRF+ILPDMLKNAPMFK G G+A GRGK AILR QAARGRGRA
Sbjct: 1 MSLGVPVKVLHEAEGHIVTLETKTGEVYRGKLVEAEDNMNCQMSGITVTYRDGRVAQLENIYIRGSKIRFLILPDMLKNAPMFKKTGPRLGAAS--TGRGKSAILRAQAARGRGRA 114
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: XP_006559497.1 (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Apis mellifera]) HSP 1 Score: 181.415 bits (459), Expect = 4.133e-59 Identity = 97/144 (67.36%), Postives = 108/144 (75.00%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQA--------ARGRGRAGPPGL-----PGSAASGRGR 131
MSIGVPIKVLHEAEGH +TCET GEVYRG+LIEAEDNMNCQM +++VT+RDGH QLEN+YIRGSKIRF+ILPDMLKNAPMFK G G+GS AGRGK AILR QA RGRG P L PG + +GRGR
Sbjct: 1 MSIGVPIKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGHEVQLENVYIRGSKIRFLILPDMLKNAPMFKRPG-GKGS--GTAGRGKSAILRAQARGRGRGQNQRGRGTGSAPWLNQQNQPGGSQAGRGR 141
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: EEB14637.1 (Small nuclear ribonucleoprotein SM D3, putative [Pediculus humanus corporis]) HSP 1 Score: 176.407 bits (446), Expect = 3.746e-57 Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAIL 105
MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LIEAEDNMNCQM + SVT+RDG VSQLEN+YIRGSKIRF+ILPDMLKNAPMFK + +G G AGRGK AIL
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMVTCSVTYRDGKVSQLENVYIRGSKIRFLILPDMLKNAPMFKRVQKGSGG----AGRGKSAIL 101
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: gb|EEC14097.1| (small nuclear ribonucleoprotein Sm D3, putative [Ixodes scapularis]) HSP 1 Score: 175.637 bits (444), Expect = 4.836e-57 Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAIL 105
MSIGVPIKVLHEAEGHIVTCET GEVYRG+L+EAEDNMNCQM++++VT+RDG V+QLEN+YIRGSKIRF+ILPDMLKNAPMFK G +A A AGRGK AIL
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKA--GTKTATASAGRGKSAIL 103
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: AAF58566.1 (small ribonucleoprotein particle protein SmD3 [Drosophila melanogaster]) HSP 1 Score: 175.252 bits (443), Expect = 1.272e-56 Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMF-KNMGRGRGSAPAXAGRGKXAILREQA 109
MSIGVPIKVLHEAEGHI+TCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG + LEN+YIRGSKIRF+ILPDMLKNAPMF K G+G G AGRGK AILR QA
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGT---AGRGKAAILRAQA 107
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: EFX68011.1 (hypothetical protein DAPPUDRAFT_63450 [Daphnia pulex]) HSP 1 Score: 173.711 bits (439), Expect = 1.997e-56 Identity = 81/108 (75.00%), Postives = 95/108 (87.96%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQ 108
MSIGVPIKVLHEAEGHI+TCET GE+YRG+L+EAEDNMNCQM++++VT+RDG V+QLEN+YIRGSKIRF+ILPDMLKNAPMFK G S+ A +GRGK AILR Q
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETNTGEIYRGKLVEAEDNMNCQMTNITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGAKAASSAAASGRGKSAILRAQ 108
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: EAA00211.2 (AGAP012380-PA [Anopheles gambiae str. PEST]) HSP 1 Score: 172.17 bits (435), Expect = 2.185e-55 Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAIL 105
MSIGVPIKVLHEAEGH+VTCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG V LEN+YIRGSKIRF+ILPDMLKNAPMFK G G+ AGRGK AIL
Sbjct: 1 MSIGVPIKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVGNLENVYIRGSKIRFLILPDMLKNAPMFKKQGAKTGT----AGRGKSAIL 101
BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Match: gb|KFM75761.1| (Small nuclear ribonucleoprotein Sm D3, partial [Stegodyphus mimosarum]) HSP 1 Score: 165.622 bits (418), Expect = 3.688e-53 Identity = 79/105 (75.24%), Postives = 90/105 (85.71%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAIL 105
MS+GVP+KVLHEAEGHIVT ET GEVYRG+L+EAEDNMNCQMS ++VT+RDG V+QLENIYIRGSKIRF+ILPDMLKNAPMFK G G+ +GRGK AIL
Sbjct: 1 MSLGVPVKVLHEAEGHIVTLETNTGEVYRGKLVEAEDNMNCQMSGITVTYRDGRVAQLENIYIRGSKIRFLILPDMLKNAPMFKKTGPRTGA--TASGRGKSAIL 103
BLAST of EMLSAG00000004431 vs. nr
Match: gi|225714524|gb|ACO13108.1| (Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis] >gi|290462385|gb|ADD24240.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis] >gi|290563060|gb|ADD38924.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]) HSP 1 Score: 276.559 bits (706), Expect = 3.874e-94 Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGLPGSAASGRGRSWAPRGR 138
MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPA AGRGK AILREQAARGRGRAGPPGLPGSAASGRGRSWAPRGR
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPASAGRGKSAILREQAARGRGRAGPPGLPGSAASGRGRSWAPRGR 138
BLAST of EMLSAG00000004431 vs. nr
Match: gi|952529928|gb|KRT83288.1| (hypothetical protein AMK59_4815, partial [Oryctes borbonicus]) HSP 1 Score: 200.29 bits (508), Expect = 3.976e-64 Identity = 99/135 (73.33%), Postives = 110/135 (81.48%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGLPGSAASGRGRSWAP 135
MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG V+QLEN+YIRGSKIRF+ILPDMLKNAPMFK + + AGRGK AILR QAARGRGRA P + G GRG SW P
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK-----KQTKSGTAGRGKSAILRAQAARGRGRASAPTVRG----GRGGSWQP 126
BLAST of EMLSAG00000004431 vs. nr
Match: gi|91084331|ref|XP_972583.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Tribolium castaneum] >gi|1004399245|gb|EFA05269.2| Small nuclear ribonucleoprotein Sm D3-like Protein [Tribolium castaneum]) HSP 1 Score: 195.667 bits (496), Expect = 4.561e-62 Identity = 97/138 (70.29%), Postives = 109/138 (78.99%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGLPGSAASGRGRSWAPRGR 138
MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG V+QLEN+YIRGSKIRF+ILPDMLKNAPMFK + AGRGK AILR QAARGRGR P + G GRG +W G+
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQ-----TKAGTAGRGKSAILRAQAARGRGRGANPAVRG----GRGGAWQAPGQ 129
BLAST of EMLSAG00000004431 vs. nr
Match: gi|926614996|ref|XP_013772561.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Limulus polyphemus]) HSP 1 Score: 193.356 bits (490), Expect = 2.019e-61 Identity = 94/118 (79.66%), Postives = 105/118 (88.98%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGP 118
MSIGVPIKVLHEAEGHIVTCET GEVYRG+L+EAEDNMNCQMS+++VT+RDG V+Q+EN+YIRGSK+RF+ILPDMLKNAPMFK G RG A A AGRGK AILR QAARGRGRA P
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMSNITVTYRDGRVAQMENVYIRGSKVRFLILPDMLKNAPMFKKTG-SRGVAAA-AGRGKSAILRAQAARGRGRARP 116
BLAST of EMLSAG00000004431 vs. nr
Match: gi|1059424825|ref|XP_017785145.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Nicrophorus vespilloides]) HSP 1 Score: 191.43 bits (485), Expect = 2.205e-60 Identity = 91/119 (76.47%), Postives = 102/119 (85.71%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPP 119
MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LIEAEDNMNCQM++++VT+RDG V+QLEN+YIRGSKIRF+ILPDMLKNAPMFK + + AGRGK AILR QAARGRGR P
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTNITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK-----KQTKAGTAGRGKSAILRAQAARGRGRGTNP 114
BLAST of EMLSAG00000004431 vs. nr
Match: gi|1069824116|ref|XP_018334774.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Agrilus planipennis]) HSP 1 Score: 190.274 bits (482), Expect = 5.139e-60 Identity = 96/138 (69.57%), Postives = 106/138 (76.81%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGL--------PGSAASGRG 130
MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG V+QLEN+YIRGSKIRF+ILPDMLKNAPMFK + AGRGK AILR QAARGRGR P + PG GRG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMAQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQ-----TKAGTAGRGKSAILRAQAARGRGRGVNPAMRGRGTWQGPGQGIPGRG 133
BLAST of EMLSAG00000004431 vs. nr
Match: gi|934154491|gb|KPM05062.1| (small nuclear ribonucleoprotein Sm D3-like protein [Sarcoptes scabiei]) HSP 1 Score: 188.348 bits (477), Expect = 1.638e-59 Identity = 91/115 (79.13%), Postives = 103/115 (89.57%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGR 115
MSIGVPIKVLHEAEGHI+TCETI GEVYRG+LIEAEDNMNCQMS+++VT+RDG V+QLEN++IRGSKIRF+ILPDMLKNAPMFK M +G G+A A RGK AILR Q ARGRGR
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLENVFIRGSKIRFLILPDMLKNAPMFKKMVKG-GTA---ANRGKSAILRAQVARGRGR 111
BLAST of EMLSAG00000004431 vs. nr
Match: gi|1108472380|emb|CRK99257.1| (CLUMA_CG012603, isoform A [Clunio marinus]) HSP 1 Score: 189.119 bits (479), Expect = 1.763e-59 Identity = 95/131 (72.52%), Postives = 105/131 (80.15%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRA--------GPPGLPG 123
MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG ++ LEN+YIRGSKIRF+ILPDMLKNAPMFKN G+ AGRGK AILR QAARGRGR GPPG G
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRMATLENVYIRGSKIRFLILPDMLKNAPMFKNKA---GNKTGTAGRGKSAILRAQAARGRGRGGLNQGPSKGPPGNKG 128
BLAST of EMLSAG00000004431 vs. nr
Match: gi|1080060456|ref|XP_018572166.1| (PREDICTED: small nuclear ribonucleoprotein Sm D3 [Anoplophora glabripennis]) HSP 1 Score: 188.734 bits (478), Expect = 2.331e-59 Identity = 99/143 (69.23%), Postives = 110/143 (76.92%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGPPGLPGSAASGRGRSW-----APRGR 138
MSIGVPIKVLHEAEGHIVTCETI GEVYRG+LIEAEDNMNCQM+ ++VT+RDG V+QLEN+YIRGSKIRF+ILPDMLKNAPMFK + AGRGK AILR Q ARGRGR P + G GRG +W AP GR
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKKQ-----TKAGTAGRGKSAILRAQ-ARGRGRGQTPPVRG----GRGGAWQNQQGAPTGR 133
BLAST of EMLSAG00000004431 vs. nr
Match: gi|1058088914|gb|JAS48116.1| (hypothetical protein g.12634 [Cuerna arida] >gi|1058162720|gb|JAS85008.1| hypothetical protein g.9193 [Homalodisca liturata]) HSP 1 Score: 187.963 bits (476), Expect = 6.088e-59 Identity = 95/138 (68.84%), Postives = 109/138 (78.99%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGRGRGSAPAXAGRGKXAILREQAARGRGRAGP-------PGLPGSAASGRGR 131
MSIGVPIKVLHEAEGHIVTCET GEVYRG+L+EAEDNMNCQM+SV+VT+RDG + +EN+YIRGSKIRF+ILPDMLKNAPMFK +G ++ + AGRGK AILR QAARGRGR GP P G SG+ R
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMTSVTVTYRDGRTADVENVYIRGSKIRFLILPDMLKNAPMFKR--QGTKASNSGAGRGKSAILRAQAARGRGRGGPLQRGQGRPNWQGPGGSGQQR 136
BLAST of EMLSAG00000004431 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold722_size106786-snap-gene-0.28 (protein:Tk04285 transcript:maker-scaffold722_size106786-snap-gene-0.28-mRNA-1 annotation:"small nuclear ribonucleoprotein sm d3") HSP 1 Score: 191.43 bits (485), Expect = 4.989e-64 Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 0
Query: 1 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGSKIRFMILPDMLKNAPMFKNMGR-GRGSA-PAXAGRGKXAILREQAA--RGRGRAGPPGLPGSAASGRGRSWAPRGR 138
MSIGVPIKVLHEAEGHIVTCETINGEVYRGRL+EAEDNMNCQM+SV+VT+RDG V+ LENIYIRGSK+RF+ILPDMLKNAPMFKNMGR GRG+ AGRGK AILR QAA RGRGR G G G G G +WAPRGR
Sbjct: 12 MSIGVPIKVLHEAEGHIVTCETINGEVYRGRLVEAEDNMNCQMTSVTVTYRDGRVATLENIYIRGSKVRFLILPDMLKNAPMFKNMGRGGRGAGNTGAAGRGKSAILRAQAAASRGRGRGGFGGPSGRGGRGGGGNWAPRGR 153
BLAST of EMLSAG00000004431 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold347_size200506-processed-gene-1.0 (protein:Tk02328 transcript:snap_masked-scaffold347_size200506-processed-gene-1.0-mRNA-1 annotation:"unknown") HSP 1 Score: 53.5286 bits (127), Expect = 6.409e-10 Identity = 24/72 (33.33%), Postives = 41/72 (56.94%), Query Frame = 0
Query: 5 VPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGH-VSQLENIYIRGSKIRFMILPD 75
+P+ +L A+ H + E NGE Y G L+ ++ MN + V T +DG ++ Y+RGS I+++ +PD
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRMPECYVRGSTIKYLRIPD 73 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004431 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 25
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BLAST of EMLSAG00000004431 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 14
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BLAST of EMLSAG00000004431 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000004431 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 14
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BLAST of EMLSAG00000004431 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 21
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BLAST of EMLSAG00000004431 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000004431 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s231:23735..24214- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004431-687197 ID=EMLSAG00000004431-687197|Name=EMLSAG00000004431|organism=Lepeophtheirus salmonis|type=gene|length=480bp|location=Sequence derived from alignment at LSalAtl2s231:23735..24214- (Lepeophtheirus salmonis)back to top Add to Basket
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