EMLSAG00000004551, EMLSAG00000004551-687317 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004551
Unique NameEMLSAG00000004551-687317
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004551 vs. C. finmarchicus
Match: gi|592875430|gb|GAXK01082147.1| (TSA: Calanus finmarchicus comp112334_c7_seq17 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 2.610e+0
Identity = 11/40 (27.50%), Postives = 23/40 (57.50%), Query Frame = 0 
Query:    6 FYLYTLNILIIKVRYLALKGCEMEIFNPIIVYVYIDMSFD 45
            F+L   ++L++KVRYL+L  C + +    +  + +  + D
Sbjct:  268 FFLGLDSLLLVKVRYLSLSACRLSLGESFLFAIGVVSTLD 387
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BLAST of EMLSAG00000004551 vs. C. finmarchicus
Match: gi|592875484|gb|GAXK01082093.1| (TSA: Calanus finmarchicus comp112334_c1_seq12 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.085e+0
Identity = 11/40 (27.50%), Postives = 23/40 (57.50%), Query Frame = 0 
Query:    6 FYLYTLNILIIKVRYLALKGCEMEIFNPIIVYVYIDMSFD 45
            F+L   ++L++KVRYL+L  C + +    +  + +  + D
Sbjct:  679 FFLGLDSLLLVKVRYLSLSACRLSLGESFLFAIGVVSTLD 798
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BLAST of EMLSAG00000004551 vs. C. finmarchicus
Match: gi|592875444|gb|GAXK01082133.1| (TSA: Calanus finmarchicus comp112334_c7_seq3 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.091e+0
Identity = 11/40 (27.50%), Postives = 23/40 (57.50%), Query Frame = 0 
Query:    6 FYLYTLNILIIKVRYLALKGCEMEIFNPIIVYVYIDMSFD 45
            F+L   ++L++KVRYL+L  C + +    +  + +  + D
Sbjct:  268 FFLGLDSLLLVKVRYLSLSACRLSLGESFLFAIGVVSTLD 387
[Close]
BLAST of EMLSAG00000004551 vs. C. finmarchicus
Match: gi|592875490|gb|GAXK01082087.1| (TSA: Calanus finmarchicus comp112334_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.135e+0
Identity = 11/40 (27.50%), Postives = 23/40 (57.50%), Query Frame = 0 
Query:    6 FYLYTLNILIIKVRYLALKGCEMEIFNPIIVYVYIDMSFD 45
            F+L   ++L++KVRYL+L  C + +    +  + +  + D
Sbjct:  679 FFLGLDSLLLVKVRYLSLSACRLSLGESFLFAIGVVSTLD 798
[Close]
BLAST of EMLSAG00000004551 vs. C. finmarchicus
Match: gi|592957934|gb|GAXK01000622.1| (TSA: Calanus finmarchicus comp7840065_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 4.803e+0
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 0 
Query:   40 IDMSFDIDDCISDLKKTQ 57
            IDM + I +CISDL+K+Q
Sbjct:  141 IDMKWIISNCISDLEKSQ 194
[Close]
BLAST of EMLSAG00000004551 vs. C. finmarchicus
Match: gi|592875441|gb|GAXK01082136.1| (TSA: Calanus finmarchicus comp112334_c7_seq6 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 5.467e+0
Identity = 10/25 (40.00%), Postives = 18/25 (72.00%), Query Frame = 0 
Query:    6 FYLYTLNILIIKVRYLALKGCEMEI 30
            F+L   ++L++KVRYL+L  C + +
Sbjct:   24 FFLGLDSLLLVKVRYLSLSACRLSL 98
[Close]
BLAST of EMLSAG00000004551 vs. C. finmarchicus
Match: gi|592875439|gb|GAXK01082138.1| (TSA: Calanus finmarchicus comp112334_c7_seq8 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.750e+0
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 0 
Query:    6 FYLYTLNILIIKVRYLALKGCEME 29
            F+L   ++L++KVRYL+L  C + 
Sbjct:    3 FFLGLDSLLLVKVRYLSLSACRLS 74
[Close]
BLAST of EMLSAG00000004551 vs. L. salmonis peptides
Match: EMLSAP00000004551 (pep:novel supercontig:LSalAtl2s:LSalAtl2s237:121229:122973:1 gene:EMLSAG00000004551 transcript:EMLSAT00000004551 description:"snap-LSalAtl2s237-processed-gene-4.88")

HSP 1 Score: 117.087 bits (292), Expect = 5.101e-36
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MKKLIFYLYTLNILIIKVRYLALKGCEMEIFNPIIVYVYIDMSFDIDDCISDLKKTQIP 59
            MKKLIFYLYTLNILIIKVRYLALKGCEMEIFNPIIVYVYIDMSFDIDDCISDLKKTQIP
Sbjct:    1 MKKLIFYLYTLNILIIKVRYLALKGCEMEIFNPIIVYVYIDMSFDIDDCISDLKKTQIP 59
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004551 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004551 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592875430|gb|GAXK01082147.1|2.610e+027.50TSA: Calanus finmarchicus comp112334_c7_seq17 tran... [more]
gi|592875484|gb|GAXK01082093.1|3.085e+027.50TSA: Calanus finmarchicus comp112334_c1_seq12 tran... [more]
gi|592875444|gb|GAXK01082133.1|3.091e+027.50TSA: Calanus finmarchicus comp112334_c7_seq3 trans... [more]
gi|592875490|gb|GAXK01082087.1|3.135e+027.50TSA: Calanus finmarchicus comp112334_c1_seq6 trans... [more]
gi|592957934|gb|GAXK01000622.1|4.803e+061.11TSA: Calanus finmarchicus comp7840065_c0_seq1 tran... [more]
gi|592875441|gb|GAXK01082136.1|5.467e+040.00TSA: Calanus finmarchicus comp112334_c7_seq6 trans... [more]
gi|592875439|gb|GAXK01082138.1|7.750e+041.67TSA: Calanus finmarchicus comp112334_c7_seq8 trans... [more]
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BLAST of EMLSAG00000004551 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000045515.101e-36100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s237:12122... [more]
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BLAST of EMLSAG00000004551 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004551 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004551 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004551 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s237supercontigLSalAtl2s237:121229..122973 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s237-processed-gene-4.88
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004551 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004551EMLSAT00000004551-700398Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s237:121229..122973+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004551-687317 ID=EMLSAG00000004551-687317|Name=EMLSAG00000004551|organism=Lepeophtheirus salmonis|type=gene|length=1745bp|location=Sequence derived from alignment at LSalAtl2s237:121229..122973+ (Lepeophtheirus salmonis)
GAAAAATTGATAATCAAAAATTGTTGTTTGCTTTTTTTTGACAAAAATAC
ATCCCATTTGGACAAATAAAATATGAAAAAATTGATTTTTTATTTGTATA
CTTTAAACATTCTAATAATTAAAGGTAAGAAAAATCAAACTTTTAAATTT
TATTCATTTTCATAATTTAATTGTGATCTATAAAAAAAATAAAAACCAAA
ACACATGCATGTAAAAATAATCTATAATTCATAGCTTATGGCTGKATAAT
TTTTTATCTCTTTTYGTTTTATTTATCCTCTTAATTAACATTCAAAAACC
AAATTATGCATAGAAAATTCAACATCAAAAAGGTAGAAAAAAACATATAT
ATATACATATTTAAGATGGTTCTGACAAGATTTTTTTTCTTCCTTGCTTC
TTCCCTGTTTCACATTAATACATGTTGTTGTAGTACGTACGTTAGTATAT
ATCATATTTTCTCTCTTCGTTAAAAGAAGTAATTCTTTAGGGCTATTACA
TAATGAGCTTCAATTGTTTTTAACTATATTAATTTTAGTTAGGTACTTAG
TAATACCTTCATACTCATAAAACGCCTCGAACAAATATTATTAATTAATA
ATGTGTCAATGTGAAATTTACCATTTTTCAATCTTTAAACATAAAATTAG
GCATTGAAAGGGTGTGAAATGGAAATATTTAACCCTATTATAGGTAAAAT
CATTTTTGTAATACAGTTACTAAACTGATTGAAAAAGAAACCCCAAACAA
AAAACATATTTAATTAAATGATAAAAACAATTGAACGATGATAATAATTA
ATGTCGCAATATAAATGGCTAASTATACAAATAAATTATAAGCCAGGCAT
TTTTAAGAAATATAATCAGATTGAACGTTTCAGGAACATAATGTAAAGTA
TTGGTCATAAAACGTAGATTCAAAGAAATAAGAAGCATTTTTACTATGTT
TGGGGGGTAAAATATCAATAACAAAGAGTTAAATATTATTATTCTAATAA
GTTAAGCACAAATGTATACATTAGTGTTGTTCGGTATACAGGTAATATAG
TGATACCGGGATACTGATAAATTTAAAACACAACTAAACTAAATTGGTAT
TGAAACTGGTACTTGTAGTGGCAATGGATGAAAAACATTTTGAACCGAAG
ATTATATAAGTTCCAAAAAGGTATCTCAAGCCCTGGTAATAAATTTCAAA
AAAGTATCGAAAATTATCATATACTGATATCAATTTTGAAACAGGAGACC
GTACAAAAATGTTGTTATACTGACAACGCTACTATTAAGTAACATTCTTA
TAATAATACAAAGAGTAGAAAAAATTACATGAATTTATAGTCTTACTTCA
CATTAGTCTTAGAGCTAAAAATGCAATATAGGCATTAAAACCCTTTTGTC
TCTATAGGAAAATATCTAATATCAATGAGCTCTAAAAGTAAAGATCAATT
TATTTTACATGTTAATTATGATCAATTTCATTTCAACTTCAATGTTACTT
TTATTTTTTATTAATTGAAATATGTTATATAATATATTTATACATTTTAG
CTTTTGTTCTTGTGTTCTTTTAAGAGCAATTTATGAATTAAATTCGCTCT
CTGTGTCTCACTCTACACATAAATATGTAAATAAATATTTTATAGTATAA
ATTATATTTAAATCTATACAGTATATGTATATATAGATATGAGTTTTGAT
ATTGATGACTGTATTTCAGACCTTAAAAAAACTCAAATTCCTTAA
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