EMLSAG00000004552, EMLSAG00000004552-687318 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592942104|gb|GAXK01016449.1| (TSA: Calanus finmarchicus comp451666_c4_seq1 transcribed RNA sequence) HSP 1 Score: 58.9214 bits (141), Expect = 8.859e-11 Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 0 Query: 3 KDGKVLLRKPDGIRDWFNIL---------KGMMKSSKEFWSKKQFTDSSSMEQYIMARHRIGHCTGRPQYG 64 +DGK+LLRKP+GI+DW+N + +K++ +FW KQ TDS +++ +++AR R+ P Sbjct: 170 RDGKILLRKPEGIKDWYNSIVHHSLLEKQTTRLKTTDQFWKSKQATDSQNIQDWLLARDRVSSACKSPDLA 382
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592912052|gb|GAXK01046323.1| (TSA: Calanus finmarchicus comp581177_c1_seq4 transcribed RNA sequence) HSP 1 Score: 57.3806 bits (137), Expect = 1.197e-9 Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 0 Query: 7 VLLRKPDGIRDWFNILKGM--------MKSSKEFWSKKQFTDSSSMEQYIMARHRIG 55 +L+R+P+ +R+W+NIL M MKS+++FW+KK DS ME+++ AR RIG Sbjct: 866 LLIRRPEKLREWYNILHKMVKESKTRVMKSTEQFWAKKTVMDSEKMEEWLAARTRIG 1036
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592912053|gb|GAXK01046322.1| (TSA: Calanus finmarchicus comp581177_c1_seq3 transcribed RNA sequence) HSP 1 Score: 57.7658 bits (138), Expect = 1.250e-9 Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 0 Query: 7 VLLRKPDGIRDWFNILKGM--------MKSSKEFWSKKQFTDSSSMEQYIMARHRIG 55 +L+R+P+ +R+W+NIL M MKS+++FW+KK DS ME+++ AR RIG Sbjct: 866 LLIRRPEKLREWYNILHKMVKESKTRVMKSTEQFWAKKTVMDSEKMEEWLAARTRIG 1036
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592912054|gb|GAXK01046321.1| (TSA: Calanus finmarchicus comp581177_c1_seq2 transcribed RNA sequence) HSP 1 Score: 57.7658 bits (138), Expect = 1.386e-9 Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 0 Query: 7 VLLRKPDGIRDWFNILKGM--------MKSSKEFWSKKQFTDSSSMEQYIMARHRIG 55 +L+R+P+ +R+W+NIL M MKS+++FW+KK DS ME+++ AR RIG Sbjct: 866 LLIRRPEKLREWYNILHKMVKESKTRVMKSTEQFWAKKTVMDSEKMEEWLAARTRIG 1036
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592912055|gb|GAXK01046320.1| (TSA: Calanus finmarchicus comp581177_c1_seq1 transcribed RNA sequence) HSP 1 Score: 57.7658 bits (138), Expect = 1.408e-9 Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 0 Query: 7 VLLRKPDGIRDWFNILKGM--------MKSSKEFWSKKQFTDSSSMEQYIMARHRIG 55 +L+R+P+ +R+W+NIL M MKS+++FW+KK DS ME+++ AR RIG Sbjct: 866 LLIRRPEKLREWYNILHKMVKESKTRVMKSTEQFWAKKTVMDSEKMEEWLAARTRIG 1036
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592928115|gb|GAXK01030372.1| (TSA: Calanus finmarchicus comp1279833_c0_seq1 transcribed RNA sequence) HSP 1 Score: 52.373 bits (124), Expect = 1.644e-8 Identity = 21/63 (33.33%), Postives = 41/63 (65.08%), Query Frame = 0 Query: 1 MGKDGKVLLRKPDGIRDWFNIL--------KGMMKSSKEFWSKKQFTDSSSMEQYIMARHRIG 55 + KD +++R+P+ +R+W+N + +M+++++FW+KK T S +ME + +AR RIG Sbjct: 28 IEKDDNLIVRRPENVREWYNTMHMRVKESKTRVMETTEQFWTKKTVTGSENMEAWRVARDRIG 216
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592755776|gb|GAXK01198637.1| (TSA: Calanus finmarchicus comp1280329_c0_seq3 transcribed RNA sequence) HSP 1 Score: 49.6766 bits (117), Expect = 4.144e-7 Identity = 28/81 (34.57%), Postives = 43/81 (53.09%), Query Frame = 0 Query: 3 KDGKVLLRKPDGIRDWFNILKGMMKSSK-----------EFWSKKQFTDSSSMEQYIMARHRIGHCTGRPQYGYYVENESF 72 K+GK+LLRK +GI++W NIL + SK +FW +KQ +D + +++AR RIG Q+ Y S+ Sbjct: 483 KEGKLLLRKTEGIKEWQNILDEKVHISKDRLDRKMPPPDQFWIRKQKSDPHDIHTWLLARDRIGQ-----QFSYMTPPPSY 710
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592933442|gb|GAXK01025111.1| (TSA: Calanus finmarchicus comp189622_c0_seq2 transcribed RNA sequence) HSP 1 Score: 50.0618 bits (118), Expect = 5.003e-7 Identity = 25/72 (34.72%), Postives = 44/72 (61.11%), Query Frame = 0 Query: 3 KDGKVLLRKPDGIRDWFNILKGM---------MKSSKEFWSKKQFTDSSSMEQYIMARHRIGHCTGRPQYGY 65 ++ K+LLRK +GI++W ++ M+S+ +FW++KQF+DS + ++ AR +IGH +YGY Sbjct: 292 REVKLLLRKTEGIKEWQQSVEQYCQREKQQRKMQSTNDFWNRKQFSDSHGFQDWLSARDKIGH-----KYGY 492
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592933443|gb|GAXK01025110.1| (TSA: Calanus finmarchicus comp189622_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.0618 bits (118), Expect = 5.358e-7 Identity = 25/72 (34.72%), Postives = 44/72 (61.11%), Query Frame = 0 Query: 3 KDGKVLLRKPDGIRDWFNILKGM---------MKSSKEFWSKKQFTDSSSMEQYIMARHRIGHCTGRPQYGY 65 ++ K+LLRK +GI++W ++ M+S+ +FW++KQF+DS + ++ AR +IGH +YGY Sbjct: 1066 REVKLLLRKTEGIKEWQQSVEQYCQREKQQRKMQSTNDFWNRKQFSDSHGFQDWLSARDKIGH-----KYGY 1266
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Match: gi|592881375|gb|GAXK01076526.1| (TSA: Calanus finmarchicus comp98672_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 6.480e-6 Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 0 Query: 1 MGKDGKVLLRKPDGIRDWFNILKGMMKSSKE---------FWSKKQFTDSSSMEQYIMARHRIG 55 + ++GKV LR+ +GIRDW+ ++ M+ S+ F ++Q TDSS ME + MA+ R+G Sbjct: 1981 LQREGKVYLRRTEGIRDWYEAIRENMQESRARRNNRTSAIFADRRQNTDSSGMENW-MAQKRLG 2169
BLAST of EMLSAG00000004552 vs. L. salmonis peptides
Match: EMLSAP00000004552 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2380:965:5180:-1 gene:EMLSAG00000004552 transcript:EMLSAT00000004552 description:"maker-LSalAtl2s2380-augustus-gene-0.3") HSP 1 Score: 278.87 bits (712), Expect = 2.353e-97 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 Query: 1 MGKDGKVLLRKPDGIRDWFNILKGMMKSSKEFWSKKQFTDSSSMEQYIMARHRIGHCTGRPQYGYYVENESFPFDSNALPNHLRMKLKGCMNQISPAQGNISTNNLKHYGYIDVPRSSFRSSEGKKFNPISC 132 MGKDGKVLLRKPDGIRDWFNILKGMMKSSKEFWSKKQFTDSSSMEQYIMARHRIGHCTGRPQYGYYVENESFPFDSNALPNHLRMKLKGCMNQISPAQGNISTNNLKHYGYIDVPRSSFRSSEGKKFNPISC Sbjct: 1 MGKDGKVLLRKPDGIRDWFNILKGMMKSSKEFWSKKQFTDSSSMEQYIMARHRIGHCTGRPQYGYYVENESFPFDSNALPNHLRMKLKGCMNQISPAQGNISTNNLKHYGYIDVPRSSFRSSEGKKFNPISC 132
BLAST of EMLSAG00000004552 vs. L. salmonis peptides
Match: EMLSAP00000002902 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1679:4649:62717:1 gene:EMLSAG00000002902 transcript:EMLSAT00000002902 description:"maker-LSalAtl2s1679-augustus-gene-0.3") HSP 1 Score: 58.5362 bits (140), Expect = 4.218e-11 Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0 Query: 1 MGKDGKVLLRKPDGIRDWFNIL----------KGMMKSSKEFWSKKQFTDS 41 + KDG++ LRKP+ IR+WF I+ KGMMKSSKEFWSKK F D+ Sbjct: 100 LSKDGRIWLRKPEDIREWFQIIKECVSASKERKGMMKSSKEFWSKKAFGDA 150
BLAST of EMLSAG00000004552 vs. L. salmonis peptides
Match: EMLSAP00000006659 (pep:novel supercontig:LSalAtl2s:LSalAtl2s36:1124995:1137618:1 gene:EMLSAG00000006659 transcript:EMLSAT00000006659 description:"maker-LSalAtl2s36-augustus-gene-11.7") HSP 1 Score: 55.8398 bits (133), Expect = 5.020e-10 Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 0 Query: 1 MGKDGKVLLRKPDGIRDWFNILKGMMKSSKEFWS------KKQFTDSSSMEQYIMARHRIGHCTGRPQYGY 65 + +DGKV LRK DGIR+W+++LK ++ K+ +KQ TDSSS+E ++ AR +IG QY Y Sbjct: 350 LPRDGKVYLRKTDGIREWYSLLKECVRECKKRRKESGALFRKQITDSSSIENWLQARKKIGL-----QYSY 415
BLAST of EMLSAG00000004552 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold233_size243130-snap-gene-0.11 (protein:Tk00485 transcript:maker-scaffold233_size243130-snap-gene-0.11-mRNA-1 annotation:"hypothetical protein D910_10882 partial") HSP 1 Score: 80.4925 bits (197), Expect = 3.864e-19 Identity = 57/155 (36.77%), Postives = 78/155 (50.32%), Query Frame = 0 Query: 1 MGKDGKVLLRKPDGIRDWFNILK----------------------------------GMMKSSKEFWSKKQFTDSSSMEQYIMARHRIGHCTGRPQYGYYVENESFPFDSNALPNHLRMKLKGCMNQ-ISPAQGNISTN---NLKHYGYIDVPRS 117 + K+GKV LRKP+GIR+WF LK GMMK++KEFWSKKQFTDSSSMEQYI+AR RI +Y Y E ES +N + +L G ++ +S + N++ YG+ID+P++ Sbjct: 101 LNKEGKVFLRKPEGIREWFQALKVSSWLRKFNSYKSTPNDHHFECPQTCVESCREKRGMMKTTKEFWSKKQFTDSSSMEQYILARKRI-----EMKYA-YSETESCASTANG-----QSRLYGQSSRDLSRSNLNMARRTPLTTTDYGFIDLPQT 244
BLAST of EMLSAG00000004552 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold14_size734282-snap-gene-6.28 (protein:Tk11317 transcript:maker-scaffold14_size734282-snap-gene-6.28-mRNA-1 annotation:"conserved hypothetical protein") HSP 1 Score: 76.2554 bits (186), Expect = 1.884e-17 Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0 Query: 1 MGKDGKVLLRKPDGIRDWFNILK----------GMMKSSKEFWSKKQFTDSSSMEQYIMARHR 53 + K+GK+LLRKP+GIR+WF LK G+MKS+KEFWSK+QFTDSS MEQY ++HR Sbjct: 415 LNKEGKILLRKPEGIREWFASLKECVQQSKDRKGLMKSTKEFWSKRQFTDSSPMEQY-TSKHR 476
BLAST of EMLSAG00000004552 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold845_size89356-snap-gene-0.21 (protein:Tk02769 transcript:maker-scaffold845_size89356-snap-gene-0.21-mRNA-1 annotation:"GH13265") HSP 1 Score: 50.447 bits (119), Expect = 1.993e-8 Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 0 Query: 3 KDGKVLLRKPDGIRDWFNILKGMMKS--------SKEFWSKKQFTDSSSMEQYIMAR 51 ++GKV LR+ DGIR+W+ +L +S S FWS++Q TDSS ME ++ + Sbjct: 430 REGKVFLRRTDGIREWYKLLVEYSQSQAHQKNSTSNSFWSRRQLTDSSGMEHWLQKK 486 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004552 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004552 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000004552 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000004552 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004552 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004552 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004552 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s2380:965..5180- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004552-687318 ID=EMLSAG00000004552-687318|Name=EMLSAG00000004552|organism=Lepeophtheirus salmonis|type=gene|length=4216bp|location=Sequence derived from alignment at LSalAtl2s2380:965..5180- (Lepeophtheirus salmonis)back to top Add to Basket
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