EMLSAG00000004590, EMLSAG00000004590-687356 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004590
Unique NameEMLSAG00000004590-687356
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000004590 vs. L. salmonis peptides
Match: EMLSAP00000004590 (pep:novel supercontig:LSalAtl2s:LSalAtl2s23:254354:254545:-1 gene:EMLSAG00000004590 transcript:EMLSAT00000004590 description:"snap_masked-LSalAtl2s23-processed-gene-2.28")

HSP 1 Score: 127.487 bits (319), Expect = 6.688e-40
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 
Query:    1 MKEGKRERKKETRRVAGFTYLILGTKPIDYIIILFPLIPFSIDSRDRLQNELTSRGKAQEVKE 63
            MKEGKRERKKETRRVAGFTYLILGTKPIDYIIILFPLIPFSIDSRDRLQNELTSRGKAQEVKE
Sbjct:    1 MKEGKRERKKETRRVAGFTYLILGTKPIDYIIILFPLIPFSIDSRDRLQNELTSRGKAQEVKE 63
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004590 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000004590 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000004590 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000045906.688e-40100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s23:254354... [more]
back to top
BLAST of EMLSAG00000004590 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000004590 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000004590 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000004590 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s23supercontigLSalAtl2s23:254354..254545 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s23-processed-gene-2.28
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004590 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004590EMLSAT00000004590-700437Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s23:254354..254545-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004590-687356 ID=EMLSAG00000004590-687356|Name=EMLSAG00000004590|organism=Lepeophtheirus salmonis|type=gene|length=192bp|location=Sequence derived from alignment at LSalAtl2s23:254354..254545- (Lepeophtheirus salmonis)
ATGAAAGAAGGAAAGAGAGAGAGAAAGAAAGAAACGAGGCGTGTTGCCGG
TTTCACATACTTGATACTTGGAACCAAGCCCATTGACTATATCATCATCC
TATTCCCACTAATTCCATTCTCCATTGATTCTAGGGATCGCCTGCAGAAT
GAACTAACAAGTCGTGGAAAGGCCCAAGAAGTGAAAGAATAA
back to top
Add to Basket