EMLSAG00000004606, EMLSAG00000004606-687372 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004606
Unique NameEMLSAG00000004606-687372
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004606 vs. C. finmarchicus
Match: gi|592788350|gb|GAXK01166218.1| (TSA: Calanus finmarchicus comp287_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 3.249e+0
Identity = 14/33 (42.42%), Postives = 21/33 (63.64%), Query Frame = 0 
Query:  127 ILVELSDLINKTWSKYFGISNVTPMRFRSKASL 159
            ILVE+ DLIN+TW    G  N++ +  +S  +L
Sbjct: 2775 ILVEMEDLINETWEDSVGRKNMSKVNGKSLGAL 2873
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BLAST of EMLSAG00000004606 vs. L. salmonis peptides
Match: EMLSAP00000004606 (pep:novel supercontig:LSalAtl2s:LSalAtl2s240:106460:110703:-1 gene:EMLSAG00000004606 transcript:EMLSAT00000004606 description:"maker-LSalAtl2s240-snap-gene-1.13")

HSP 1 Score: 838.18 bits (2164), Expect = 0.000e+0
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0 
Query:    1 MFPSKRPKSSKNMNFALDASFKRHELHKSLQDSILDVSMMSSPIRRRIMMDFKDDIDDFPILAITITSKFSLYTNRSSKTLLIRNRKIDNEEPTMISQWWKDPSIRKLVNIGFIPSYAINAVHASTILVELSDLINKTWSKYFGISNVTPMRFRSKASLSFVNLVLLKIADNKLPNRGLPYGSLVDMNVCKQCGYPEGISPHNHVNKTAICIYPICDKNKGHLLRVCGVLHGFCYQCGQVGHMAXSXRLYELEMIKXAYESHREFGILNPIGLEVFALRRNFLSQDEFDPMTINNKSNSYLNRVPQKSVDVIEQFISNIKDTCFKEDYNLSNLPESYKRLSFNMDDTDLSYIWGMEEKNDLSINRSFDRILKETSSPGFFSCDVMPRSFSSLDDSNDELSNSGSEISFMP 410
            MFPSKRPKSSKNMNFALDASFKRHELHKSLQDSILDVSMMSSPIRRRIMMDFKDDIDDFPILAITITSKFSLYTNRSSKTLLIRNRKIDNEEPTMISQWWKDPSIRKLVNIGFIPSYAINAVHASTILVELSDLINKTWSKYFGISNVTPMRFRSKASLSFVNLVLLKIADNKLPNRGLPYGSLVDMNVCKQCGYPEGISPHNHVNKTAICIYPICDKNKGHLLRVCGVLHGFCYQCGQVGHMAXSXRLYELEMIKXAYESHREFGILNPIGLEVFALRRNFLSQDEFDPMTINNKSNSYLNRVPQKSVDVIEQFISNIKDTCFKEDYNLSNLPESYKRLSFNMDDTDLSYIWGMEEKNDLSINRSFDRILKETSSPGFFSCDVMPRSFSSLDDSNDELSNSGSEISFMP
Sbjct:    1 MFPSKRPKSSKNMNFALDASFKRHELHKSLQDSILDVSMMSSPIRRRIMMDFKDDIDDFPILAITITSKFSLYTNRSSKTLLIRNRKIDNEEPTMISQWWKDPSIRKLVNIGFIPSYAINAVHASTILVELSDLINKTWSKYFGISNVTPMRFRSKASLSFVNLVLLKIADNKLPNRGLPYGSLVDMNVCKQCGYPEGISPHNHVNKTAICIYPICDKNKGHLLRVCGVLHGFCYQCGQVGHMAXSXRLYELEMIKXAYESHREFGILNPIGLEVFALRRNFLSQDEFDPMTINNKSNSYLNRVPQKSVDVIEQFISNIKDTCFKEDYNLSNLPESYKRLSFNMDDTDLSYIWGMEEKNDLSINRSFDRILKETSSPGFFSCDVMPRSFSSLDDSNDELSNSGSEISFMP 410
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004606 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004606 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592788350|gb|GAXK01166218.1|3.249e+042.42TSA: Calanus finmarchicus comp287_c0_seq1 transcri... [more]
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BLAST of EMLSAG00000004606 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000046060.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s240:10646... [more]
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BLAST of EMLSAG00000004606 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004606 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004606 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004606 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s240supercontigLSalAtl2s240:106460..110703 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s240-snap-gene-1.13
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004606 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004606EMLSAT00000004606-700453Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s240:106460..110703-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004606-687372 ID=EMLSAG00000004606-687372|Name=EMLSAG00000004606|organism=Lepeophtheirus salmonis|type=gene|length=4244bp|location=Sequence derived from alignment at LSalAtl2s240:106460..110703- (Lepeophtheirus salmonis)
ATGTTCCCTTCAAAGCGCCCAAAAAGTTCGAAGTTGAAGATTGATGTCCT
TGGACACTTTTGCAGCAATTTTTTTTCGAAATTTTAGACGATGATTCATT
CATTGTAGAGACAATGAAGTAGCAGCCATTGTGAAAAATATTAGGCAACT
TTCGAGTTTGGGGACTGATTAGCTTTGAAAGTTTATGTACAAAATTATTG
TTTAGAACTTGTGTCAAGAGTAAAAAAAAAAAAAAAATCAGCTGTCTCAG
TTAAACAGTTTTTTTTCAATGTCCAGGTTTCACAATTTAAAGGATAATTC
AACGCCCAGGCAACATGACATTGGTAGTTACCTAAGACAAATAATTCCTA
AGTATTTTGGATGTAGTGCAATAATTAATAGCCATTTATTAGTATTTTCG
ATACTAAACAAAAGTAGGATAATTGCTACACCAGGAGAAGACATGATACA
GGGCAGAAGAAGACATGGTACAGGGTAGGATTAAATATGTAAAAACTGCC
ATTTGTTATATTTCAGCAATTATTTTACTTTTTATTACAATTTGTCAGGA
TAAAGTAAATACTTAAAACCCTATATATAAGATAATCAAATAAAACATTT
ACAAAACTAGAACATAGTTAATAATAAAATTCAAAAAAATATATTTTTTT
AAATTTTACTCTTATATATATATATTTAAGTATATAGTACGAGTATATCT
AATAAAAATGAAGTGTAACCAGTCTCTTCCATAGTGTTGGAATCAAAATA
AATAGTGTGAACTGAATATTGACAATAATAATATATAACAAACACGTTAA
TTAATTGAAAAACATGCTAAACTATCACATTTAATAAAATAAAATTAAAA
TCTCATGCTTTATAATAGAAATATATAAAAACAAACACTACCTAAAATGT
TTACTTTTAGTGTTCCAAATTCCAAGGTGGAAATTCTCTATAACTGCGAG
CACTAGGCCACCCAAATTTTATATTGATATGATAAAAACAAAAGAAGGCA
TTCAATTTTATTAGAGCAGGGTGGTTAGATTTTAAAGTTATTGGCATTGT
AACATGTCTCTCCCGTAACAAGTATACTCACTCTCCCCTAAATAGTTTGT
TATAACAGAAAGAATAAGATATTTTTCTCAAATTAATCTATATCTGTCGT
CCATAATCCATATGAAAACTGTACATATYTAGCCACTTTAAAAGATTTTC
ATAATCTAGTACTTTGATTTAATTCAGAAACAACTGTTTATTATTGGCAT
CAAATACTATTCCATGAAGGTATTAAGTCTTTTTATATTTTTAATGACAT
TTGATGAAGTTTCCTCAAGAAATATTGAAAAGTTACGTATTGTAGGTAGT
AAAAATAGCAATTATGAGGCCACAAGAGAGCGTCGCATTTAATTATGATG
CAATTTATATATCAGTAAAAACAATCAACCCTGAGTCCAGCAAATCCTCA
TTGTTCCTCTCCGTATTTCATGAGCACACCCACTAGTTATTATTTTGAGC
TTGGATGTTCCTTTCTGAAGAATTAAATAATCATGACAGCAGCTTTGGGT
AACCAAAAAGCAGTTTCCCCTTTCTAGGACATATTTTATTCCGGAGTAGG
ATACCTAATAATCCCCAGACGATAGCTCCCTTCCTTTTTACCTTTCCGCG
ATTTTTGTAGATTTTAATTTTTTTGTGTCCCTCTGCAAATCTACAGCACA
TACCATAAAAAAACTTCGATCTTTTTTTATGAAAAAAATCAACTTATTTG
AGAAAAAAACAAACTTCCCCTCCAGAGTCCAGGAATCTGGTCTGATCATA
TGAAGTATAGCCTTACGCACGTAATTCAGAATTTTGAACAACTGTTATTT
TATGTTGAAAGTGTCTGTTTTTGAAATAAATGCTATTTATCATTGTTTTT
TTAAGTTGCACGTAAATTAAATTGATACATCATACATTATTTTAATACTA
TGTAGGATACCGAGTATTAGTAGAGGCAGATAACGTAGGACATCCAACAA
TAAACAATGCCATCAGTTTTGATAGCATTGTTACTGACAATTTATTCATT
CAAATAAAGTATAGAAAGGAACATCATTTCAACGTCGTATATCTGTTAGT
AATACATACATCCCTAAATATGTTAACCAAAGTGGATTTTTAATTTTTTT
TTTCTATCATGGAGAAAAGCTTTGAAGATAATACGGAGACCAATTGAGGA
CTATGAAAAATTATTTGACTCTTCTTAGCATCGATTGATAGAAGATTTAC
CAGATCCCAGATGAAATAATAAATTACAATAATTAACTTTAAATAATTGA
GGATGACGAGAAATACCACCAGGAGAAGTCTGACACATTACTAAAACCTA
CGTCAGCAGAGGGAGAGGGAAACCAATTAAACTTCATCCCCAAATATGGA
CCCACTGAAGGCTGTCATAGCGGCTGCGKAGGRCAATTTGTTTAGGGAGT
TATACATCAACTCCTGTAAGGTTTTCCAACGACGTCTAAAGACTGTGATT
GAAGTGACTGAAGGTGGTACTATTGAGTAAAAAAGTATGCAAAGGCCTTG
TTTACAAGTTTTGTTAAAATTATTTTACATTATTATTGACAAAAAAGAAA
AATAATTGAAGTATGTCCTAAAACAACCTCTCAAGCCTACGTTTTCTTAC
CCAACTCTATATTACTAGTACATGCCTTTTAAATTCAATGTGTTTACTAA
CTTGAAAATGAAAATGATTTTGCTATTATAATTTTTGTTTGTTGAATGAA
AAGGAGAGCTATAATTTGAGAGTGACATTCCAATAATACAGATTTATAAC
ACGTTTGATAACTAATCATTTAATTTTTTTTTGTTCAAACTGAAAATATA
TGTAGAGACAGGTGTTTCTAATCCTAAAAGATATTAGATAGCAATTATCT
TTTGTCAACTTATGTCCTTTTATTTCAGTATCATTTCATTTCCGAACAAA
GGCATTACACCAAGGACGATTTTGAACCCTCTGAATGTAAGAAATATTGT
CAGCATATTGTATAATATCACTATTCATTTACTATTTGTTTAGAAATATG
AACTTTGCATTAGATGCCTCTTTCAAGCGACATGAACTTCATAAAAGCCT
CCAGGATAGTATTCTTGATGTTTCTATGATGTCTTCCCCAATAAGAAGGA
GAATTATGATGGACTTTAAGGATGATATCGATGATTTTCCTATTCTTGCA
ATCACCATAACATCCAAGTTCTCCCTCTATACTAACAGGTCATCAAAAAC
ATTGCTAATAAGAAACAGGAAGATTGATAATGAAGAGCCAACGATGATCA
GTCAATGGTGGAAGGATCCCAGTATCCGAAAGCTAGTAAACATTGGCTTC
ATCCCTTCATATGCCATCAATGCAGTCCATGCTTCAACTATTCTAGTGGA
GCTTTCTGATTTAATCAACAAAACATGGTCCAAGTACTTTGGGATATCCA
ATGTGACCCCAATGCGATTTAGATCTAAAGCTTCTCTGTCCTTTGTTAAT
TTAGTACTCCTAAAAATAGCGGATAATAAACTACCAAATAGAGGTCTTCC
TTATGGGTCCCTCGTAGATATGAACGTCTGCAAACAGTGCGGTTACCCAG
AGGGTATAAGTCCTCATAACCATGTAAACAAAACAGCCATTTGCATTTAT
CCTATTTGTGACAAAAACAAGGGACATTTATTGAGAGTATGCGGTGTTCT
ACATGGGTTCTGCTACCAATGCGGGCAAGTTGGGCATATGGCTCSCTCTC
MTAGATTGTATGAATTGGAAATGATTAAAMAAGCCTATGAGTCTCATCGA
GAGTTTGGGATTTTGAATCCCATTGGACTTGAGGTCTTTGCTCTAAGAAG
AAACTTTTTGTCACAGGATGAATTTGACCCCATGACCATTAACAACAAAA
GTAATTCTTACTTAAATCGAGTTCCCCAAAAATCCGTTGATGTTATTGAG
CAGTTTATTAGTAACATAAAGGATACGTGCTTCAAGGAAGATTATAATCT
ATCGAATTTACCTGAGAGCTATAAGAGATTGAGTTTTAATATGGATGACA
CGGATCTATCTTATATTTGGGGAATGGAGGAGAAAAACGATTTATCTATA
AATAGATCCTTTGACAGGATCCTCAAGGAAACAAGTTCCCCAGGTTTCTT
TAGTTGTGATGTTATGCCTAGATCGTTTTCTTCATTGGATGACTCCAATG
ATGAGCTCAGTAATTCAGGCAGTGAAATTAGCTTCATGCCTTAA
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