EMLSAG00000004677, EMLSAG00000004677-687443 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004677
Unique NameEMLSAG00000004677-687443
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000004677 vs. C. finmarchicus
Match: gi|592926487|gb|GAXK01031955.1| (TSA: Calanus finmarchicus comp21700_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 7.517e-5
Identity = 21/64 (32.81%), Postives = 32/64 (50.00%), Query Frame = 0
Query:   17 RKMKSNSRI---FRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKRL 77
            R M+S S+      +YP    +C P A+ YG C+G  M +++   C  EF  F  CI+   K +
Sbjct:  103 RLMESVSKARARLASYPLHLASCGPQAVAYGRCVGDYMGEVRKDQCAKEFKVFMTCIRQSAKTM 294          
BLAST of EMLSAG00000004677 vs. C. finmarchicus
Match: gi|592849908|gb|GAXK01107636.1| (TSA: Calanus finmarchicus comp1307111_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.695e+0
Identity = 19/57 (33.33%), Postives = 27/57 (47.37%), Query Frame = 0
Query:   16 TRKMKSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQT 72
            + K+++  RIF     +F A     I +G CIGR+        CQ + L    CIQT
Sbjct:   23 SWKVQNEERIF*---KVFRAWSWTWISWGFCIGRSRSP-----CQIQCLSSLPCIQT 169          
BLAST of EMLSAG00000004677 vs. L. salmonis peptides
Match: EMLSAP00000004677 (pep:novel supercontig:LSalAtl2s:LSalAtl2s244:194633:195068:1 gene:EMLSAG00000004677 transcript:EMLSAT00000004677 description:"maker-LSalAtl2s244-snap-gene-2.6")

HSP 1 Score: 161.77 bits (408), Expect = 4.769e-53
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
Query:    1 MKTSRFPSDLYAPKYTRKMKSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKRLR 78
            MKTSRFPSDLYAPKYTRKMKSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKRLR
Sbjct:    1 MKTSRFPSDLYAPKYTRKMKSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKRLR 78          
BLAST of EMLSAG00000004677 vs. Select Arthropod Genomes
Match: ACL83191.1 (uncharacterized protein Dmel_CG42380, isoform B [Drosophila melanogaster])

HSP 1 Score: 50.447 bits (119), Expect = 2.675e-9
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0
Query:   20 KSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQ 71
            K+N RI R YP +   C   A  Y  C+ R+++ +QH++C +EF EF  CI+
Sbjct:    6 KANQRI-RNYPVLLSKCADKATAYAVCVSRDLN-VQHKICDTEFKEFLSCIR 55          
BLAST of EMLSAG00000004677 vs. Select Arthropod Genomes
Match: ACL83190.1 (uncharacterized protein Dmel_CG42380, isoform A [Drosophila melanogaster])

HSP 1 Score: 50.447 bits (119), Expect = 2.675e-9
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0
Query:   20 KSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQ 71
            K+N RI R YP +   C   A  Y  C+ R+++ +QH++C +EF EF  CI+
Sbjct:    6 KANQRI-RNYPVLLSKCADKATAYAVCVSRDLN-VQHKICDTEFKEFLSCIR 55          
BLAST of EMLSAG00000004677 vs. nr
Match: gi|1032650813|gb|OAQ32093.1| (hypothetical protein K457DRAFT_16542 [Mortierella elongata AG-77])

HSP 1 Score: 52.7582 bits (125), Expect = 1.165e-7
Identity = 21/53 (39.62%), Postives = 29/53 (54.72%), Query Frame = 0
Query:   24 RIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKR 76
            +   T      +C   A  YGACI   M+D+   VC+ EFL FK+C+Q+  KR
Sbjct:    6 QTLATLSKTIASCSTTATAYGACISATMNDVHKGVCEKEFLAFKECVQSSLKR 58          
BLAST of EMLSAG00000004677 vs. nr
Match: gi|672822769|gb|KFH67663.1| (hypothetical protein MVEG_06395 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 53.5286 bits (127), Expect = 1.233e-7
Identity = 21/42 (50.00%), Postives = 25/42 (59.52%), Query Frame = 0
Query:   35 ACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKR 76
            AC   A  YGAC+   M D+   VC+ EFL FK C+QT  KR
Sbjct:   46 ACASTATAYGACVSATMSDVHKGVCEKEFLAFKDCVQTSMKR 87          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004677 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004677 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592926487|gb|GAXK01031955.1|7.517e-532.81TSA: Calanus finmarchicus comp21700_c0_seq1 transc... [more]
gi|592849908|gb|GAXK01107636.1|3.695e+033.33TSA: Calanus finmarchicus comp1307111_c0_seq1 tran... [more]
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BLAST of EMLSAG00000004677 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000046774.769e-53100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s244:19463... [more]
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BLAST of EMLSAG00000004677 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004677 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
ACL83191.12.675e-940.38uncharacterized protein Dmel_CG42380, isoform B [D... [more]
ACL83190.12.675e-940.38uncharacterized protein Dmel_CG42380, isoform A [D... [more]
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BLAST of EMLSAG00000004677 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|1032650813|gb|OAQ32093.1|1.165e-739.62hypothetical protein K457DRAFT_16542 [Mortierella ... [more]
gi|672822769|gb|KFH67663.1|1.233e-750.00hypothetical protein MVEG_06395 [Mortierella verti... [more]
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BLAST of EMLSAG00000004677 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s244supercontigLSalAtl2s244:194633..195068 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s244-snap-gene-2.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004677 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004677EMLSAT00000004677-700524Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s244:194633..195068+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004677-687443 ID=EMLSAG00000004677-687443|Name=EMLSAG00000004677|organism=Lepeophtheirus salmonis|type=gene|length=436bp|location=Sequence derived from alignment at LSalAtl2s244:194633..195068+ (Lepeophtheirus salmonis)
ATGAAAACATCACGTTTCCCAAGTGATCTCTACGCTCCGAAATATACAAG TAATTCCTATTTTAGGTCTGATTGGTTTAAAAAGGCTAGATATCATTTCA TGAATAAAGGATTTATGCTTTTGGGTCTATCKCTCTTTTTTGGCCCTTAT ATATATCAANAAGCCACGACTCCTCTCTCCACCAAGGATAAGGAGGACCT CAAAAAAATCAAAAAGGACATTTACTCTTCCATTGGTCTCAGTGTGAGGG AAGATGAAGAGTAATAGTCGTATATTTCGGACATATCCTGCTATCTTCGA GGCATGTKCCCCTGCTGCTATCAAATATGGAGCCTGTATTGGGAGAAATA TGGATGATATTCAGCACCGTGTTTGCCAGTCTGAGTTTTTAGAATTTAAA AAATGCATTCAGACCCAACAAAAAAGACTGCGTTAA
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