EMLSAG00000004677, EMLSAG00000004677-687443 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004677 vs. C. finmarchicus
Match: gi|592926487|gb|GAXK01031955.1| (TSA: Calanus finmarchicus comp21700_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 7.517e-5 Identity = 21/64 (32.81%), Postives = 32/64 (50.00%), Query Frame = 0 Query: 17 RKMKSNSRI---FRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKRL 77 R M+S S+ +YP +C P A+ YG C+G M +++ C EF F CI+ K + Sbjct: 103 RLMESVSKARARLASYPLHLASCGPQAVAYGRCVGDYMGEVRKDQCAKEFKVFMTCIRQSAKTM 294
BLAST of EMLSAG00000004677 vs. C. finmarchicus
Match: gi|592849908|gb|GAXK01107636.1| (TSA: Calanus finmarchicus comp1307111_c0_seq1 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 3.695e+0 Identity = 19/57 (33.33%), Postives = 27/57 (47.37%), Query Frame = 0 Query: 16 TRKMKSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQT 72 + K+++ RIF +F A I +G CIGR+ CQ + L CIQT Sbjct: 23 SWKVQNEERIF*---KVFRAWSWTWISWGFCIGRSRSP-----CQIQCLSSLPCIQT 169
BLAST of EMLSAG00000004677 vs. L. salmonis peptides
Match: EMLSAP00000004677 (pep:novel supercontig:LSalAtl2s:LSalAtl2s244:194633:195068:1 gene:EMLSAG00000004677 transcript:EMLSAT00000004677 description:"maker-LSalAtl2s244-snap-gene-2.6") HSP 1 Score: 161.77 bits (408), Expect = 4.769e-53 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 Query: 1 MKTSRFPSDLYAPKYTRKMKSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKRLR 78 MKTSRFPSDLYAPKYTRKMKSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKRLR Sbjct: 1 MKTSRFPSDLYAPKYTRKMKSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKRLR 78
BLAST of EMLSAG00000004677 vs. Select Arthropod Genomes
Match: ACL83191.1 (uncharacterized protein Dmel_CG42380, isoform B [Drosophila melanogaster]) HSP 1 Score: 50.447 bits (119), Expect = 2.675e-9 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0 Query: 20 KSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQ 71 K+N RI R YP + C A Y C+ R+++ +QH++C +EF EF CI+ Sbjct: 6 KANQRI-RNYPVLLSKCADKATAYAVCVSRDLN-VQHKICDTEFKEFLSCIR 55
BLAST of EMLSAG00000004677 vs. Select Arthropod Genomes
Match: ACL83190.1 (uncharacterized protein Dmel_CG42380, isoform A [Drosophila melanogaster]) HSP 1 Score: 50.447 bits (119), Expect = 2.675e-9 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0 Query: 20 KSNSRIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQ 71 K+N RI R YP + C A Y C+ R+++ +QH++C +EF EF CI+ Sbjct: 6 KANQRI-RNYPVLLSKCADKATAYAVCVSRDLN-VQHKICDTEFKEFLSCIR 55
BLAST of EMLSAG00000004677 vs. nr
Match: gi|1032650813|gb|OAQ32093.1| (hypothetical protein K457DRAFT_16542 [Mortierella elongata AG-77]) HSP 1 Score: 52.7582 bits (125), Expect = 1.165e-7 Identity = 21/53 (39.62%), Postives = 29/53 (54.72%), Query Frame = 0 Query: 24 RIFRTYPAIFEACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKR 76 + T +C A YGACI M+D+ VC+ EFL FK+C+Q+ KR Sbjct: 6 QTLATLSKTIASCSTTATAYGACISATMNDVHKGVCEKEFLAFKECVQSSLKR 58
BLAST of EMLSAG00000004677 vs. nr
Match: gi|672822769|gb|KFH67663.1| (hypothetical protein MVEG_06395 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 53.5286 bits (127), Expect = 1.233e-7 Identity = 21/42 (50.00%), Postives = 25/42 (59.52%), Query Frame = 0 Query: 35 ACXPAAIKYGACIGRNMDDIQHRVCQSEFLEFKKCIQTQQKR 76 AC A YGAC+ M D+ VC+ EFL FK C+QT KR Sbjct: 46 ACASTATAYGACVSATMSDVHKGVCEKEFLAFKDCVQTSMKR 87 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004677 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004677 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000004677 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000004677 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004677 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 2
BLAST of EMLSAG00000004677 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 2
BLAST of EMLSAG00000004677 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s244:194633..195068+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004677-687443 ID=EMLSAG00000004677-687443|Name=EMLSAG00000004677|organism=Lepeophtheirus salmonis|type=gene|length=436bp|location=Sequence derived from alignment at LSalAtl2s244:194633..195068+ (Lepeophtheirus salmonis)back to top Add to Basket
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