EMLSAG00000004867, EMLSAG00000004867-687633 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004867
Unique NameEMLSAG00000004867-687633
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004867 vs. C. finmarchicus
Match: gi|592754710|gb|GAXK01199703.1| (TSA: Calanus finmarchicus comp181228_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 4.635e-1
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 0 
Query:   15 IRINFREPIFLKDEEDNLGGVSEVLDFLRIRISFRCPIFLKG--VDGV-RFSFS---GSFSKTLTELG 76
            I INF +PIFLK+     G   +  DFL    +F  PIFLK   + GV RF F    G+FS +   LG
Sbjct:  864 ILINFLDPIFLKEA---FGVPGDPPDFLFTLTNFLEPIFLKADFLRGVKRFIFDLAEGTFSLSTLTLG 1058
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BLAST of EMLSAG00000004867 vs. C. finmarchicus
Match: gi|592754711|gb|GAXK01199702.1| (TSA: Calanus finmarchicus comp181228_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 4.636e-1
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 0 
Query:   15 IRINFREPIFLKDEEDNLGGVSEVLDFLRIRISFRCPIFLKG--VDGV-RFSFS---GSFSKTLTELG 76
            I INF +PIFLK+     G   +  DFL    +F  PIFLK   + GV RF F    G+FS +   LG
Sbjct:  876 ILINFLDPIFLKEA---FGVPGDPPDFLFTLTNFLEPIFLKADFLRGVKRFIFDLAEGTFSLSTLTLG 1070
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BLAST of EMLSAG00000004867 vs. C. finmarchicus
Match: gi|592880380|gb|GAXK01077521.1| (TSA: Calanus finmarchicus comp427961_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 8.448e+0
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   10 SFFERIRINFREPIFLKDEEDNLGGVSEVLDFLRI 44
            SF+  +R +FR P        + GGV +VLDFL +
Sbjct: 1155 SFYHNVRQSFRHP-------QHPGGVFDVLDFLHV 1238
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BLAST of EMLSAG00000004867 vs. L. salmonis peptides
Match: EMLSAP00000004867 (pep:novel supercontig:LSalAtl2s:LSalAtl2s256:580531:580830:-1 gene:EMLSAG00000004867 transcript:EMLSAT00000004867 description:"snap_masked-LSalAtl2s256-processed-gene-5.14")

HSP 1 Score: 192.586 bits (488), Expect = 1.885e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 
Query:    1 MGEDSSFSTSFFERIRINFREPIFLKDEEDNLGGVSEVLDFLRIRISFRCPIFLKGVDGVRFSFSGSFSKTLTELGSINKLLSSFFRRFDIWVECSTAL 99
            MGEDSSFSTSFFERIRINFREPIFLKDEEDNLGGVSEVLDFLRIRISFRCPIFLKGVDGVRFSFSGSFSKTLTELGSINKLLSSFFRRFDIWVECSTAL
Sbjct:    1 MGEDSSFSTSFFERIRINFREPIFLKDEEDNLGGVSEVLDFLRIRISFRCPIFLKGVDGVRFSFSGSFSKTLTELGSINKLLSSFFRRFDIWVECSTAL 99
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004867 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004867 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592754710|gb|GAXK01199703.1|4.635e-142.65TSA: Calanus finmarchicus comp181228_c0_seq2 trans... [more]
gi|592754711|gb|GAXK01199702.1|4.636e-142.65TSA: Calanus finmarchicus comp181228_c0_seq1 trans... [more]
gi|592880380|gb|GAXK01077521.1|8.448e+040.00TSA: Calanus finmarchicus comp427961_c1_seq1 trans... [more]
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BLAST of EMLSAG00000004867 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000048671.885e-64100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s256:58053... [more]
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BLAST of EMLSAG00000004867 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004867 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004867 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004867 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s256supercontigLSalAtl2s256:580531..580830 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s256-processed-gene-5.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004867 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004867EMLSAT00000004867-700714Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s256:580531..580830-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004867-687633 ID=EMLSAG00000004867-687633|Name=EMLSAG00000004867|organism=Lepeophtheirus salmonis|type=gene|length=300bp|location=Sequence derived from alignment at LSalAtl2s256:580531..580830- (Lepeophtheirus salmonis)
ATGGGGGAAGATTCATCCTTTTCCACCTCCTTTTTCGAGCGTATTCGAAT
CAATTTTCGAGAGCCTATTTTTTTGAAAGATGAAGAAGACAACTTGGGCG
GCGTTTCCGAGGTTTTAGACTTTCTCCGGATACGAATAAGCTTTCGATGT
CCAATTTTTTTAAAGGGCGTTGACGGAGTTCGATTTTCCTTCTCAGGAAG
CTTTTCCAAGACTTTGACAGAGTTGGGATCGATAAATAAACTCTTATCTT
CGTTCTTTCGGAGATTTGACATCTGGGTGGAGTGCTCCACTGCTCTTTGA
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