EMLSAG00000004868, EMLSAG00000004868-687634 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004868
Unique NameEMLSAG00000004868-687634
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004868 vs. C. finmarchicus
Match: gi|592898677|gb|GAXK01059698.1| (TSA: Calanus finmarchicus comp929551_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.624e-2
Identity = 18/58 (31.03%), Postives = 31/58 (53.45%), Query Frame = 0 
Query:    3 FWCPFGNVFSFFIVIAESGFFTLSTHGSTSQGLAFRLD------WSNSFHLGRVFSST 54
            F+CP  N+F+  I+  +S  FT+  H   S  +  RL+      WS+ + +G++F  T
Sbjct:   84 FYCPKNNLFAL*IITTDSLLFTIQHHS*QSCSIKARLETKYFPHWSHLYFIGQLFLRT 257
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BLAST of EMLSAG00000004868 vs. C. finmarchicus
Match: gi|592754710|gb|GAXK01199703.1| (TSA: Calanus finmarchicus comp181228_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.866e-2
Identity = 24/79 (30.38%), Postives = 37/79 (46.84%), Query Frame = 0 
Query:   23 FTLSTHGSTSQGLAFRLDWSNSFHLGRVFSSTAESFHELRASLRSWIDFDVSIRTIVSRANTFKEEFTRGHLLRSNFMT 101
            + LS H +T+     +L   +   L  V    A +  E  A L       V +  ++  A++F+E F RGH LR NF+T
Sbjct: 2002 WALSPHPATATS-PVKLRAGHHVPLLAVRPVAAVALQEGLADLSLGRHLHVEVGAVLLAADSFQEIFARGHFLRGNFVT 2235
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BLAST of EMLSAG00000004868 vs. C. finmarchicus
Match: gi|592754711|gb|GAXK01199702.1| (TSA: Calanus finmarchicus comp181228_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.867e-2
Identity = 24/79 (30.38%), Postives = 37/79 (46.84%), Query Frame = 0 
Query:   23 FTLSTHGSTSQGLAFRLDWSNSFHLGRVFSSTAESFHELRASLRSWIDFDVSIRTIVSRANTFKEEFTRGHLLRSNFMT 101
            + LS H +T+     +L   +   L  V    A +  E  A L       V +  ++  A++F+E F RGH LR NF+T
Sbjct: 2014 WALSPHPATATS-PVKLRAGHHVPLLAVRPVAAVALQEGLADLSLGRHLHVEVGAVLLAADSFQEIFARGHFLRGNFVT 2247
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BLAST of EMLSAG00000004868 vs. C. finmarchicus
Match: gi|592859916|gb|GAXK01097646.1| (TSA: Calanus finmarchicus comp39804_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 7.782e+0
Identity = 11/32 (34.38%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   26 STHGSTSQGLAFRLDWSNSFHLGRVFSSTAES 57
            +TH    +G+++   WSN+FH+     S  ES
Sbjct: 3591 ATHNLQQEGVSWSCFWSNTFHIYFTAGSAGES 3686
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BLAST of EMLSAG00000004868 vs. C. finmarchicus
Match: gi|592859917|gb|GAXK01097645.1| (TSA: Calanus finmarchicus comp39804_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 7.816e+0
Identity = 11/32 (34.38%), Postives = 18/32 (56.25%), Query Frame = 0 
Query:   26 STHGSTSQGLAFRLDWSNSFHLGRVFSSTAES 57
            +TH    +G+++   WSN+FH+     S  ES
Sbjct: 4407 ATHNLQQEGVSWSCFWSNTFHIYFTAGSAGES 4502
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BLAST of EMLSAG00000004868 vs. L. salmonis peptides
Match: EMLSAP00000004868 (pep:novel supercontig:LSalAtl2s:LSalAtl2s256:581570:581992:-1 gene:EMLSAG00000004868 transcript:EMLSAT00000004868 description:"snap_masked-LSalAtl2s256-processed-gene-5.18")

HSP 1 Score: 201.83 bits (512), Expect = 4.496e-68
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 
Query:    1 MEFWCPFGNVFSFFIVIAESGFFTLSTHGSTSQGLAFRLDWSNSFHLGRVFSSTAESFHELRASLRSWIDFDVSIRTIVSRANTFKEEFTRGHLLRSNFMT 101
            MEFWCPFGNVFSFFIVIAESGFFTLSTHGSTSQGLAFRLDWSNSFHLGRVFSSTAESFHELRASLRSWIDFDVSIRTIVSRANTFKEEFTRGHLLRSNFMT
Sbjct:    1 MEFWCPFGNVFSFFIVIAESGFFTLSTHGSTSQGLAFRLDWSNSFHLGRVFSSTAESFHELRASLRSWIDFDVSIRTIVSRANTFKEEFTRGHLLRSNFMT 101
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004868 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004868 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592898677|gb|GAXK01059698.1|3.624e-231.03TSA: Calanus finmarchicus comp929551_c0_seq1 trans... [more]
gi|592754710|gb|GAXK01199703.1|3.866e-230.38TSA: Calanus finmarchicus comp181228_c0_seq2 trans... [more]
gi|592754711|gb|GAXK01199702.1|3.867e-230.38TSA: Calanus finmarchicus comp181228_c0_seq1 trans... [more]
gi|592859916|gb|GAXK01097646.1|7.782e+034.38TSA: Calanus finmarchicus comp39804_c3_seq2 transc... [more]
gi|592859917|gb|GAXK01097645.1|7.816e+034.38TSA: Calanus finmarchicus comp39804_c3_seq1 transc... [more]
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BLAST of EMLSAG00000004868 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000048684.496e-68100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s256:58157... [more]
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BLAST of EMLSAG00000004868 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004868 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004868 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004868 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s256supercontigLSalAtl2s256:581570..581992 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s256-processed-gene-5.18
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004868 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004868EMLSAT00000004868-700715Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s256:581570..581992-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004868-687634 ID=EMLSAG00000004868-687634|Name=EMLSAG00000004868|organism=Lepeophtheirus salmonis|type=gene|length=423bp|location=Sequence derived from alignment at LSalAtl2s256:581570..581992- (Lepeophtheirus salmonis)
ATGGAGTTCTGGTGCCCCTTTGGGAACGTCTTTAGTTTCTTCATCGTAAT
AGCGGAGTCTGGCTTTTTTACCCTGAGCACTCATGGGAGTACTTCCCAAG
GACTTGCGTTTCGGCTTGACTGGAGCAACTCTTTTCATCTTGGAAGGGGT
TTGTGTCACTATTGAATTAGCATTTGCAATGTGAGGAAGTCTGCAATATT
CCTCATTTGAGCACTTTCCGGAAGAAGCAAACTCCTGACATATGTAAGTG
TGTTGTTTTTTACAGTTTTCTCCAGCACTGCAGAATCCTTTCATGAACTC
AGGGCAAGCCTCCGCAGTTGGATTGACTTTGATGTGTCTATAAGGACAAT
TGTCTCTAGAGCAAACACCTTCAAGGAAGAATTTACACGAGGGCATCTTC
TCAGGAGCAACTTCATGACTTAG
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