EMLSAG00000004871, EMLSAG00000004871-687637 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004871
Unique NameEMLSAG00000004871-687637
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004871 vs. L. salmonis peptides
Match: EMLSAP00000004871 (pep:novel supercontig:LSalAtl2s:LSalAtl2s256:594416:595657:-1 gene:EMLSAG00000004871 transcript:EMLSAT00000004871 description:"augustus_masked-LSalAtl2s256-processed-gene-6.3")

HSP 1 Score: 805.438 bits (2079), Expect = 0.000e+0
Identity = 413/413 (100.00%), Postives = 413/413 (100.00%), Query Frame = 0 
Query:    1 MSRNNNYSGIRSGKNYTPSNTITSKSHSNNSRRYSPNHNNDEDSDIEIIKETNFINQPFRDRSNSPNARNFGSARRSRSXSQDGRPNNNRDNFYGHRRNDEFGMNNNDFGARNDRRTYNQGNSTRGTFNTPVEPDYKSNNKDNTSNYQYVRGSNGNNFTRFNNSNNIRDPNKKGANSSKFTGSVGYFTKPSNTEQNNPISYNSGNFNDGYNNGGPAFGNNSQGSFNNNTGNGKYRKEGYPNDGYNTDSRDCSGMKDVKFVSSNHSNATINKRFTEYSDSGSNQTNTSIVNKPPNSTNSYNASFVDRSKSDKRPPSFTIPSVVPYPKGKQSAVPPAPHIRPLSEVKVPTPPIIRSLPYEGSASYESAPPIVLNFKHQDGPTPPPVPPPSGQYSGYRKNSNMENRSYPNISYPKY 413
            MSRNNNYSGIRSGKNYTPSNTITSKSHSNNSRRYSPNHNNDEDSDIEIIKETNFINQPFRDRSNSPNARNFGSARRSRSXSQDGRPNNNRDNFYGHRRNDEFGMNNNDFGARNDRRTYNQGNSTRGTFNTPVEPDYKSNNKDNTSNYQYVRGSNGNNFTRFNNSNNIRDPNKKGANSSKFTGSVGYFTKPSNTEQNNPISYNSGNFNDGYNNGGPAFGNNSQGSFNNNTGNGKYRKEGYPNDGYNTDSRDCSGMKDVKFVSSNHSNATINKRFTEYSDSGSNQTNTSIVNKPPNSTNSYNASFVDRSKSDKRPPSFTIPSVVPYPKGKQSAVPPAPHIRPLSEVKVPTPPIIRSLPYEGSASYESAPPIVLNFKHQDGPTPPPVPPPSGQYSGYRKNSNMENRSYPNISYPKY
Sbjct:    1 MSRNNNYSGIRSGKNYTPSNTITSKSHSNNSRRYSPNHNNDEDSDIEIIKETNFINQPFRDRSNSPNARNFGSARRSRSXSQDGRPNNNRDNFYGHRRNDEFGMNNNDFGARNDRRTYNQGNSTRGTFNTPVEPDYKSNNKDNTSNYQYVRGSNGNNFTRFNNSNNIRDPNKKGANSSKFTGSVGYFTKPSNTEQNNPISYNSGNFNDGYNNGGPAFGNNSQGSFNNNTGNGKYRKEGYPNDGYNTDSRDCSGMKDVKFVSSNHSNATINKRFTEYSDSGSNQTNTSIVNKPPNSTNSYNASFVDRSKSDKRPPSFTIPSVVPYPKGKQSAVPPAPHIRPLSEVKVPTPPIIRSLPYEGSASYESAPPIVLNFKHQDGPTPPPVPPPSGQYSGYRKNSNMENRSYPNISYPKY 413
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004871 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004871 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004871 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000048710.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s256:59441... [more]
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BLAST of EMLSAG00000004871 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004871 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004871 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004871 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s256supercontigLSalAtl2s256:594416..595657 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s256-processed-gene-6.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004871 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004871EMLSAT00000004871-700718Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s256:594416..595657-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004871-687637 ID=EMLSAG00000004871-687637|Name=EMLSAG00000004871|organism=Lepeophtheirus salmonis|type=gene|length=1242bp|location=Sequence derived from alignment at LSalAtl2s256:594416..595657- (Lepeophtheirus salmonis)
ATGTCAAGAAACAATAATTATTCTGGAATTAGAAGTGGAAAAAATTACAC
TCCTTCAAATACAATAACATCTAAATCACATTCCAATAATTCTCGAAGAT
ACTCCCCAAATCATAATAATGATGAAGACTCTGATATTGAAATAATCAAA
GAAACAAATTTTATAAATCAACCATTCCGAGATCGTTCAAATTCCCCTAA
TGCAAGAAATTTTGGTTCTGCACGACGCTCAAGGAGTARAAGCCAAGACG
GTAGACCCAACAACAATCGGGATAATTTTTATGGGCATCGTAGAAACGAT
GAATTCGGCATGAATAACAATGATTTTGGAGCAAGAAATGATCGGCGAAC
TTATAATCAAGGCAATAGTACGAGAGGTACATTTAATACACCTGTGGAGC
CCGACTACAAATCCAATAATAAAGATAATACTTCTAATTATCAATACGTT
CGTGGAAGTAATGGCAATAATTTTACCAGATTTAATAATAGTAACAATAT
TAGAGATCCTAACAAAAAAGGAGCCAATTCTAGCAAGTTTACTGGCAGTG
TTGGTTATTTTACTAAACCTTCAAATACTGAGCAAAATAATCCTATCAGT
TATAATTCGGGTAATTTTAATGATGGTTATAACAATGGAGGACCCGCATT
CGGAAATAATAGTCAGGGTTCGTTTAACAACAACACTGGGAATGGAAAAT
ACCGTAAAGAAGGTTATCCCAATGATGGATATAATACTGATAGCAGAGAC
TGTAGTGGAATGAAAGATGTGAAATTTGTTTCTTCGAATCACAGTAACGC
CACTATAAATAAAAGGTTTACTGAGTATTCAGACTCTGGATCCAATCAGA
CCAATACTTCGATAGTTAATAAACCTCCTAACTCAACTAACAGTTACAAT
GCTTCATTTGTTGATCGTTCGAAATCTGATAAACGGCCTCCTTCATTTAC
TATTCCCTCTGTGGTACCTTATCCTAAAGGAAAACAGTCTGCTGTACCTC
CAGCACCCCATATTAGACCCCTCTCAGAAGTCAAAGTTCCAACTCCACCT
ATTATAAGGTCACTACCTTATGAAGGCAGTGCTAGTTACGAGTCTGCACC
ACCCATAGTTTTAAATTTTAAACACCAGGATGGGCCAACCCCTCCTCCTG
TACCACCTCCGTCGGGACAGTATTCTGGTTATAGAAAAAACTCAAATATG
GAAAATCGGAGCTATCCTAATATAAGCTATCCCAAGTACTAA
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