EMLSAG00000005587, EMLSAG00000005587-688353 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005587
Unique NameEMLSAG00000005587-688353
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000005587 vs. L. salmonis peptides
Match: EMLSAP00000005587 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2:2096601:2098047:1 gene:EMLSAG00000005587 transcript:EMLSAT00000005587 description:"snap_masked-LSalAtl2s2-processed-gene-20.11")

HSP 1 Score: 358.607 bits (919), Expect = 2.175e-127
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 
Query:    1 MVEFNIRFFRSKPVSEIPLESVTLLESQAKSEEVIDSIASSSWRENDNMAHHRTYIISKKGDEDIPLDGNLIPIIRGILDFDGKFDPEHRSSDAEDDVDESSTGDGASHQNGTNKRKYVDIYDLGFRRASLNESNFYSTSSASFVRDRFSSSSSLSNTKKRSLSPYGLKYDVFQCN 176
            MVEFNIRFFRSKPVSEIPLESVTLLESQAKSEEVIDSIASSSWRENDNMAHHRTYIISKKGDEDIPLDGNLIPIIRGILDFDGKFDPEHRSSDAEDDVDESSTGDGASHQNGTNKRKYVDIYDLGFRRASLNESNFYSTSSASFVRDRFSSSSSLSNTKKRSLSPYGLKYDVFQCN
Sbjct:    1 MVEFNIRFFRSKPVSEIPLESVTLLESQAKSEEVIDSIASSSWRENDNMAHHRTYIISKKGDEDIPLDGNLIPIIRGILDFDGKFDPEHRSSDAEDDVDESSTGDGASHQNGTNKRKYVDIYDLGFRRASLNESNFYSTSSASFVRDRFSSSSSLSNTKKRSLSPYGLKYDVFQCN 176
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005587 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005587 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005587 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000055872.175e-127100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2:2096601... [more]
back to top
BLAST of EMLSAG00000005587 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005587 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005587 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000005587 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2supercontigLSalAtl2s2:2096601..2098047 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s2-processed-gene-20.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005587 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005587EMLSAT00000005587-701434Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2:2096601..2098047+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005587-688353 ID=EMLSAG00000005587-688353|Name=EMLSAG00000005587|organism=Lepeophtheirus salmonis|type=gene|length=1447bp|location=Sequence derived from alignment at LSalAtl2s2:2096601..2098047+ (Lepeophtheirus salmonis)
ATGGCTCCAACAACTTCTCGAAACAAAGTTAAGAATGAAGATAACATCAT
GGGAAGGATATTAGTGAAAAAGGACAAATTAGTAGTTTTGTGTCGGAAAA
TATCCTTTAAAACTGTGATTGGACACCACAAAACGTATCAAGTAGAAGAT
ATCTACAAAAGGGAGTCACTTCGATGCCGAATCATGTCTCCTGAAAATAA
GAGCCCCTCCGCTTGTACATCTAAGGATGTCCTAATTCGAATAAAACAGA
GAATTGGTTCAGCCAAAAGAAAAACAAGATCTGATTTGTGGACTCCAGCT
AATGGTGGAATTCAATATTCGGTTTTTCCGAAGCAAAGTAAAATTGTAAG
TTTATATCCTATTCCATGAATTCATAGTGGAGAAGGTATCCCAGATATAT
TTTTGACAAGTTGTTATTTTAACCTTTATCACTGGGATTCCTATTTTTTT
TATTTATGAATAATTCGAAATGAAGATTCTATTACCCATTCCACGAGTGT
TTTTTTGATCTTTTTTATCCTCTGACAAGAAAAAGTAAATTATCAAACGA
AGAAATTTGATACTAATTTATAATCATATTGTATCGTGAATTGTGTGGGA
GAATCTAGTTTCAAATGTCGAGTACCTTTATTTCATTATTTGAAAATATA
TCTCTTAATCAGCCTGTTTCAGAAATACCATTAGAGTCCGTAACTCTCTT
AGAGAGTCAAGCAAAGTCGGAAGAAGTTATCGATAGCATCGCTTCATCAT
CATGGAGGGAAAATGACAACATGGCTCACCACAGGACCTACATTATTTCG
AAGAAAGGTGACGAGGACATACCCTTGGATGGTAATTTAATTCCTATCAT
TCGCGGTATTTTGGATTTTGATGGGAAATTCGATCCAGAACATCGGAGCT
CTGATGCTGAAGATGATGTCGACGAGAGCTCTACTGGAGATGGTGCTTCG
CACCAAAATGGAACAAATAAGAGAAAATATGTAGATATATATGACTTGGG
ATTCCGAAGAGCGAGTTTAAATGAGAGTAACTTTTACTCAACTTCATCCG
CTTCTTTTGTTCGAGATAGATTCTCATCGAGTTCTTCTCTCTCGAATACT
AAAAAGAGATCCTTAAGTCCTTATGGGTTAAAATATGACGTCTTTCAATG
CAATTAGATTAGATATTAATATTTATATACTCTATTATTGTCTATAGTCT
TCAAAGATTTCGTTCTGAATTGTTTATGCGCCTATCATAAGAAACCCAAC
AAAAAAATTGCAATATTAATGAATATTTATATAAATATATAATATAATAT
AATGATACTATATATTCCATCAAATATATTATATAATATGTCTGGCATTA
TGATCAAAATGACTTATCTATCATAGGGATATTTTTTTCCGCGTAGGATT
TCAGAAATATGCAAAGAGTAGGTTACCTTAGAAATGTTTTAAATTGG
back to top
Add to Basket