EMLSAG00000005933, EMLSAG00000005933-688699 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592805238|gb|GAXK01149330.1| (TSA: Calanus finmarchicus comp96297_c4_seq1 transcribed RNA sequence) HSP 1 Score: 46.2098 bits (108), Expect = 3.853e-6 Identity = 24/87 (27.59%), Postives = 40/87 (45.98%), Query Frame = 0 Query: 19 NSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 N S++R P + ++T+N Y F+ + + +S+IV C PW LY Y G + V+ +S +C PG+Y Sbjct: 418 NDASSLRFTGAPDDYLYDTLNIYFSDYFIGDEEFMYNDTPLLNYDNRARSVIVTGCSPWTLYQYDHYSGSAMCVFPASTSDCTPGYY 678
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592806332|gb|GAXK01148236.1| (TSA: Calanus finmarchicus comp1026702_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.1282 bits (100), Expect = 9.469e-6 Identity = 19/40 (47.50%), Postives = 24/40 (60.00%), Query Frame = 0 Query: 65 GKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 KS+IVA C W LY Y+G + V+ S + NC PGFY Sbjct: 51 AKSVIVAGCSAWTLYQYDNYQGAALCVFPSHMGNCNPGFY 170
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592909389|gb|GAXK01048986.1| (TSA: Calanus finmarchicus comp65445_c2_seq2 transcribed RNA sequence) HSP 1 Score: 43.8986 bits (102), Expect = 1.322e-5 Identity = 26/89 (29.21%), Postives = 39/89 (43.82%), Query Frame = 0 Query: 17 LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 +N S+VR P + +++T+N Y F+ + + S+IV C PW LY Y G + V+ SS C PG Y Sbjct: 17 FDNKASSVRFTGAPDDWNYDTLNIYFNDFFIGDEEFTYDDKTQLNYDNRAMSVIVTGCSPWTLYESDHYTGSAMCVFPSSSTACTPGLY 283
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592909390|gb|GAXK01048985.1| (TSA: Calanus finmarchicus comp65445_c2_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 1.993e-5 Identity = 26/89 (29.21%), Postives = 39/89 (43.82%), Query Frame = 0 Query: 17 LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 +N S+VR P + +++T+N Y F+ + + S+IV C PW LY Y G + V+ SS C PG Y Sbjct: 87 FDNQASSVRFTGAPDDWNYDTLNIYFNDFFIGDEEFTYDDKTQLNYDNRAMSVIVTGCSPWTLYESDHYTGSAMCVFPSSSTACTPGLY 353
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592909384|gb|GAXK01048991.1| (TSA: Calanus finmarchicus comp65445_c4_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 3.250e-5 Identity = 26/89 (29.21%), Postives = 39/89 (43.82%), Query Frame = 0 Query: 17 LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 +N S+VR P + +++T+N Y F+ + + S+IV C PW LY Y G + V+ SS C PG Y Sbjct: 220 FDNQASSVRFTGAPDDWNYDTLNIYFNDFFIGDEEFTYDDKTQLNYDNRAMSVIVTGCSPWTLYESDHYTGSAMCVFPSSSTACTPGLY 486
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592953641|gb|GAXK01004912.1| (TSA: Calanus finmarchicus comp5770152_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 4.344e-5 Identity = 18/39 (46.15%), Postives = 26/39 (66.67%), Query Frame = 0 Query: 66 KSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 +S+IV C+P+ +Y + Y+GD I V+ SS C PGFY Sbjct: 108 RSLIVTECRPFTIYEKWDYQGDAICVFPSSTNFCNPGFY 224
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592909388|gb|GAXK01048987.1| (TSA: Calanus finmarchicus comp65445_c2_seq3 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 1.009e-4 Identity = 22/76 (28.95%), Postives = 33/76 (43.42%), Query Frame = 0 Query: 29 PKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 P + +++T+N Y F+ + + S+IV C PW LY Y G + V+ SS C PG Y Sbjct: 16 PDDWNYDTLNIYFNDFFIGDEEFTYDDKTQLNYDNRAMSVIVTGCSPWTLYESDHYTGSAMCVFPSSSTACTPGLY 243
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592766454|gb|GAXK01188114.1| (TSA: Calanus finmarchicus comp10051_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 4.645e-3 Identity = 24/101 (23.76%), Postives = 42/101 (41.58%), Query Frame = 0 Query: 6 SSTTYILTVDT-LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 S Y + V +N S++R P + ++T+N Y F+ + + +SIIV C W +Y Y+G+ + ++ C PG Y Sbjct: 252 SGDNYCIDVPAQFDNQASSLRFTGAPDDWKYDTLNIYFNDYFIGDEEFTYNDMPQLNYDNRARSIIVTGCDAWTIYQYDNYQGNAMCLFPGDSSACNPGLY 554
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592798422|gb|GAXK01156146.1| (TSA: Calanus finmarchicus comp284306_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 6.882e-3 Identity = 27/105 (25.71%), Postives = 44/105 (41.90%), Query Frame = 0 Query: 3 FMFSSTTYILTVDTLENSQSTVRERIPK-NMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLK 106 +++ T + D N S++R K + F++IN Y G F + F + +SIIV+ W LY Y+G + V+ C+P FY Sbjct: 305 WIYGDGTCLDVPDLFNNQASSLRYAGSKADWCFDSINLYYGLYFSGYESEWIFKDTPGLGSVSAQSIIVSGGSAWTLYEGENYQGRAVCVFPDVAGGCQPEFYFD 619
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Match: gi|592909385|gb|GAXK01048990.1| (TSA: Calanus finmarchicus comp65445_c2_seq6 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 3.135e-2 Identity = 15/35 (42.86%), Postives = 17/35 (48.57%), Query Frame = 0 Query: 70 VAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 V C PW LY Y G + V+ SS C PG Y Sbjct: 1 VTGCSPWTLYESDHYTGSAMCVFPSSSTACTPGLY 105
BLAST of EMLSAG00000005933 vs. L. salmonis peptides
Match: EMLSAP00000003756 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2028:36330:37007:-1 gene:EMLSAG00000003756 transcript:EMLSAT00000003756 description:"augustus_masked-LSalAtl2s2028-processed-gene-0.0") HSP 1 Score: 53.9138 bits (128), Expect = 3.724e-10 Identity = 33/105 (31.43%), Postives = 50/105 (47.62%), Query Frame = 0 Query: 11 ILTVDTLENSQSTVRERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCS-SIENCEPGFYLKQTGYWSFC 114 I T+ + S+ R ++ NTIN Y+G FM Q + GKSII+ C+PW LY + + G I +Y + S C+PGF K + + +F Sbjct: 87 ISTLGEINGKVSSTRYSGVDDLFANTINFYEGPGFMGIEQSVQRDSPKLNYDNFGKSIIITGCKPWTLYEKENFGGKKICIYPNLSSTPCKPGFLEKPSAFGNFA 191
BLAST of EMLSAG00000005933 vs. L. salmonis peptides
Match: EMLSAP00000005478 (pep:novel supercontig:LSalAtl2s:LSalAtl2s294:475549:479341:1 gene:EMLSAG00000005478 transcript:EMLSAT00000005478 description:"snap_masked-LSalAtl2s294-processed-gene-4.12") HSP 1 Score: 48.1358 bits (113), Expect = 6.793e-8 Identity = 27/112 (24.11%), Postives = 53/112 (47.32%), Query Frame = 0 Query: 3 FMFSSTTYILTVDTLENSQSTVRER-IPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLKQTGYWSF 113 F + ++ +L ++ S++R I + +T+N Y+ F Q + F ++ S+I+ C+PW LY ++ + GD I V+ + C PGF+ + + F Sbjct: 84 FAWGNSYDVLNFGKMKYHTSSLRSAGIGNFLQRSTLNFYEKEGFGGREQYYSGDIPFLMEEMNFHSLILTGCEPWTLYDDKFFDGDRICVFPGDEDRCYPGFFPRHEDFGYF 195
BLAST of EMLSAG00000005933 vs. L. salmonis peptides
Match: EMLSAP00000004908 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2584:8224:8901:-1 gene:EMLSAG00000004908 transcript:EMLSAT00000004908 description:"snap_masked-LSalAtl2s2584-processed-gene-0.1") HSP 1 Score: 45.8246 bits (107), Expect = 2.951e-7 Identity = 29/103 (28.16%), Postives = 49/103 (47.57%), Query Frame = 0 Query: 13 TVDTLENSQSTVRERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCS-SIENCEPGFYLKQTGYWSFC 114 T+ + S++R ++S NT+N Y+G + M Q + KSII+ C+P+ LY + + G I VY + + C+PGF K + + F Sbjct: 75 TMGGINGKVSSIRHSGVDDLSANTLNFYEGPRSMGIEQNVYKDSPKLNYDKFDKSIIITGCKPFTLYEKENFGGKRICVYPNYTSTPCKPGFLEKPSAFGHFA 177
BLAST of EMLSAG00000005933 vs. nr
Match: gi|290561783|gb|ADD38289.1| (Gamma-crystallin A [Lepeophtheirus salmonis]) HSP 1 Score: 81.2629 bits (199), Expect = 1.823e-16 Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0 Query: 30 KNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLKQTGYWSFC 114 +NM ++T+N Y+ FM + Q F F GKSII+ CQPW LY Y+GDHI +Y SS +NCEPGFYL+ + F Sbjct: 116 ENMKYSTLNFYEESGFMGDEQYFYFDNPSLYHDNFGKSIILTGCQPWTLYEHTSYRGDHICIYPSSTQNCEPGFYLEPQDFGHFV 200
BLAST of EMLSAG00000005933 vs. nr
Match: gi|290561421|gb|ADD38111.1| (Beta-crystallin A1 [Lepeophtheirus salmonis]) HSP 1 Score: 61.6178 bits (148), Expect = 3.441e-9 Identity = 32/89 (35.96%), Postives = 45/89 (50.56%), Query Frame = 0 Query: 17 LENSQSTVRER-IPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 +N S++R + + +IN Y+ F + F +F + G SIIV C PW LY E+ + GDHI VY S NC PGF+ Sbjct: 95 FKNRASSLRNSGVGSSYKDKSINFYEREGFAGEEEYFSNDTPYFRKDNFGDSIIVTGCSPWTLYEEKYFAGDHICVYPSDENNCLPGFF 183
BLAST of EMLSAG00000005933 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.32 (protein:Tk09637 transcript:maker-scaffold94_size379870-snap-gene-2.32-mRNA-1 annotation:"gamma-crystallin a") HSP 1 Score: 60.8474 bits (146), Expect = 2.696e-12 Identity = 32/93 (34.41%), Postives = 47/93 (50.54%), Query Frame = 0 Query: 17 LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLKQT 108 +N S++R P ++TIN Y+G FM Q F A F +G+S+IV C PW +Y Y+G +Y S ENC P F+ + + Sbjct: 109 FDNRASSIRFAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTENCYPSFFPEPS 201 HSP 2 Score: 58.5362 bits (140), Expect = 1.549e-11 Identity = 31/89 (34.83%), Postives = 44/89 (49.44%), Query Frame = 0 Query: 17 LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFY 104 +N S++R P ++TIN Y+G FM Q F A F +G+S+IV C PW +Y Y+G +Y S NC P F+ Sbjct: 345 FDNKASSIRFSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTANCYPSFF 433
BLAST of EMLSAG00000005933 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.29 (protein:Tk09638 transcript:maker-scaffold94_size379870-snap-gene-2.29-mRNA-1 annotation:"gamma-crystallin d") HSP 1 Score: 56.6102 bits (135), Expect = 4.007e-11 Identity = 32/92 (34.78%), Postives = 46/92 (50.00%), Query Frame = 0 Query: 16 TLENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLK 106 T +N S++R P +++ + Y G F+ Q F A G+S IV C PW LYSE YKG+ I ++ + NC PGF+ K Sbjct: 122 TFDNKASSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPK 213
BLAST of EMLSAG00000005933 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.28 (protein:Tk09640 transcript:maker-scaffold94_size379870-snap-gene-2.28-mRNA-1 annotation:"beta-crystallin b1") HSP 1 Score: 52.373 bits (124), Expect = 1.884e-9 Identity = 31/101 (30.69%), Postives = 46/101 (45.54%), Query Frame = 0 Query: 9 TYILTVDT-LENSQSTVR-ERIPKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLKQ 107 Y + +D+ ++N S+VR P ++TIN Y+G FM Q A G+S+IV C PW Y ++G Y S + C P F+ Q Sbjct: 106 NYCVNLDSAMDNKASSVRFSGAPDGYKYDTINLYEGDYFMGMEQFLYDDAYQMNYDNFGRSMIVTGCSPWTAYQYDNFQGYSKCFYPSDTQQCHPAFFTSQ 206 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005933 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005933 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 17
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BLAST of EMLSAG00000005933 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 13
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BLAST of EMLSAG00000005933 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005933 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005933 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 2
BLAST of EMLSAG00000005933 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s320:21267..21614- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005933-688699 ID=EMLSAG00000005933-688699|Name=EMLSAG00000005933|organism=Lepeophtheirus salmonis|type=gene|length=348bp|location=Sequence derived from alignment at LSalAtl2s320:21267..21614- (Lepeophtheirus salmonis)back to top Add to Basket
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