EMLSAG00000006086, EMLSAG00000006086-688852 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006086
Unique NameEMLSAG00000006086-688852
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006086 vs. C. finmarchicus
Match: gi|592955745|gb|GAXK01002811.1| (TSA: Calanus finmarchicus comp834515_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.953e-1
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   16 CSSNLIDQLIFIFSNHVKVVTLNDLPALNYFEIKCLMNHKV 56
            C SN++ ++ FIFS    +  L+D  ALNY  I C  N K+
Sbjct:  819 CLSNIVLKVAFIFSKLFTLDILDDYHALNYSTILCFQNCKI 941
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BLAST of EMLSAG00000006086 vs. C. finmarchicus
Match: gi|592751210|gb|GAXK01203203.1| (TSA: Calanus finmarchicus comp521855_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.877e+0
Identity = 15/42 (35.71%), Postives = 27/42 (64.29%), Query Frame = 0 
Query:    9 NNDCILICSSN--LIDQLIFIFSNHVKVVTLNDLPALNYFEI 48
            NN C+ +CSS   +I  ++FI + H K++T+N+     Y+E+
Sbjct: 1089 NNVCLKLCSSQKLIIFAVVFIINLHYKLLTMNNF----YWEV 1202
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BLAST of EMLSAG00000006086 vs. C. finmarchicus
Match: gi|592751209|gb|GAXK01203204.1| (TSA: Calanus finmarchicus comp521855_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 9.411e+0
Identity = 15/42 (35.71%), Postives = 27/42 (64.29%), Query Frame = 0 
Query:    9 NNDCILICSSN--LIDQLIFIFSNHVKVVTLNDLPALNYFEI 48
            NN C+ +CSS   +I  ++FI + H K++T+N+     Y+E+
Sbjct: 1089 NNVCLKLCSSQKLIIFAVVFIINLHYKLLTMNNF----YWEV 1202
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BLAST of EMLSAG00000006086 vs. L. salmonis peptides
Match: EMLSAP00000006086 (pep:novel supercontig:LSalAtl2s:LSalAtl2s32:276170:276608:-1 gene:EMLSAG00000006086 transcript:EMLSAT00000006086 description:"maker-LSalAtl2s32-snap-gene-4.24")

HSP 1 Score: 135.961 bits (341), Expect = 4.827e-43
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MSETKLLQNNDCILICSSNLIDQLIFIFSNHVKVVTLNDLPALNYFEIKCLMNHKVKFSLSISIIRVKL 69
            MSETKLLQNNDCILICSSNLIDQLIFIFSNHVKVVTLNDLPALNYFEIKCLMNHKVKFSLSISIIRVKL
Sbjct:    1 MSETKLLQNNDCILICSSNLIDQLIFIFSNHVKVVTLNDLPALNYFEIKCLMNHKVKFSLSISIIRVKL 69
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006086 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006086 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592955745|gb|GAXK01002811.1|2.953e-141.46TSA: Calanus finmarchicus comp834515_c0_seq1 trans... [more]
gi|592751210|gb|GAXK01203203.1|6.877e+035.71TSA: Calanus finmarchicus comp521855_c3_seq1 trans... [more]
gi|592751209|gb|GAXK01203204.1|9.411e+035.71TSA: Calanus finmarchicus comp521855_c3_seq2 trans... [more]
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BLAST of EMLSAG00000006086 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000060864.827e-43100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s32:276170... [more]
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BLAST of EMLSAG00000006086 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006086 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006086 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006086 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s32supercontigLSalAtl2s32:276170..276608 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s32-snap-gene-4.24
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006086 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006086EMLSAT00000006086-701933Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s32:276170..276608-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006086-688852 ID=EMLSAG00000006086-688852|Name=EMLSAG00000006086|organism=Lepeophtheirus salmonis|type=gene|length=439bp|location=Sequence derived from alignment at LSalAtl2s32:276170..276608- (Lepeophtheirus salmonis)
ATGAGTGAAACAAAATTATTACAAAATAATGATTGCATTTTAATTTGTTC
GAGTAATTTAATCGATCAATTAATCTTCATATTTTCCAATCACGTCAAAG
TTGTAACTTTAAACGATCTCCCTGCCTTAAACTACTTTGAGATCAAGTGT
TTAATGAATCATAAAGGTGTTTTAAAAAGTACGTTTTATATGTACATGGT
CCATATATTTCTGACTAGTTAGTTAGTTTAATAAAGTAGCTAGTAGATAT
TGCGGATTGGAACTTTCAATTAAGGGGTATGGATCCTAACTGAGGTCCTT
TAATTATGTATATTAATATCTGGAGCAGTGGCAAGAAGCGTCTCTTTTTC
TCACTCTCTTTCTAGCTCCATTCTTTTTCTTCTCTTTTTTTTTAGTTAAG
TTTTCTCTTTCTATCTCTATTATCAGAGTGAAACTTTAA
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