EMLSAG00000006200, EMLSAG00000006200-688966 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006200
Unique NameEMLSAG00000006200-688966
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006200 vs. L. salmonis peptides
Match: EMLSAP00000006200 (pep:novel supercontig:LSalAtl2s:LSalAtl2s339:337718:340806:-1 gene:EMLSAG00000006200 transcript:EMLSAT00000006200 description:"maker-LSalAtl2s339-snap-gene-2.26")

HSP 1 Score: 468.389 bits (1204), Expect = 4.883e-169
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0 
Query:    1 MNIRRDDLPKILKKYATSLQRQILATALTLSLLCSISFSMKFLACEGIKTLSKFDIRNFTRIEDWSIYPINSLTCGRSPCVVYNDEEDNKTLTTESKEIMKFIYFKYNSKNRLFAYKDEEKYLQSNLDFFGTYIHTWGVLSHYKYLQYLTRIIRYPTRCMFIEKPKLLLKHSEQKGPDHLSSTLRDKAGTIIELNPLFQNVSEFDNEIILKVEGLLDRAEAIISNED 227
            MNIRRDDLPKILKKYATSLQRQILATALTLSLLCSISFSMKFLACEGIKTLSKFDIRNFTRIEDWSIYPINSLTCGRSPCVVYNDEEDNKTLTTESKEIMKFIYFKYNSKNRLFAYKDEEKYLQSNLDFFGTYIHTWGVLSHYKYLQYLTRIIRYPTRCMFIEKPKLLLKHSEQKGPDHLSSTLRDKAGTIIELNPLFQNVSEFDNEIILKVEGLLDRAEAIISNED
Sbjct:    1 MNIRRDDLPKILKKYATSLQRQILATALTLSLLCSISFSMKFLACEGIKTLSKFDIRNFTRIEDWSIYPINSLTCGRSPCVVYNDEEDNKTLTTESKEIMKFIYFKYNSKNRLFAYKDEEKYLQSNLDFFGTYIHTWGVLSHYKYLQYLTRIIRYPTRCMFIEKPKLLLKHSEQKGPDHLSSTLRDKAGTIIELNPLFQNVSEFDNEIILKVEGLLDRAEAIISNED 227
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BLAST of EMLSAG00000006200 vs. L. salmonis peptides
Match: EMLSAP00000001051 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:54317:57440:-1 gene:EMLSAG00000001051 transcript:EMLSAT00000001051 description:"maker-LSalAtl2s1172-snap-gene-0.47")

HSP 1 Score: 119.783 bits (299), Expect = 3.288e-31
Identity = 81/173 (46.82%), Postives = 91/173 (52.60%), Query Frame = 0 
Query:   55 DIRNFTRIEDWSIYPINSLTCGRSPCVVYNDEEDNKTLTTESKEIMKFIYFKYNSKNRLFAYKDEEKYLQSNLDFFGTYIHTWGVLSHYKYLQYLTRIIRYPTRCMFIEKPKLLLKHSEQKGPDHLSSTLRDKAGTIIELNPLFQNVSEFDNEIILKVEGLLDRAEAIISNED 227
            DI +  + EDW +  +N    G  P  VY DEEDNKT+ TES EIMKFI  KYNSKNRLF Y DEEK LQ  LDF          L H  Y                                    + LRDKA  +IELN LFQNVSEF+ EI+ KVE LLDR EAI+SNED
Sbjct:  360 DIIDGEQFEDWFL-DLNPK--GEVPVFVYYDEEDNKTVITESTEIMKFIDSKYNSKNRLFTYTDEEKDLQGMLDF----------LDHSSY------------------------------------NALRDKASKLIELNSLFQNVSEFEKEIMFKVEVLLDRIEAILSNED 483
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BLAST of EMLSAG00000006200 vs. nr
Match: gi|225710356|gb|ACO11024.1| (Ganglioside-induced differentiation-associated protein 1 [Caligus rogercresseyi])

HSP 1 Score: 117.087 bits (292), Expect = 5.471e-28
Identity = 78/190 (41.05%), Postives = 107/190 (56.32%), Query Frame = 0 
Query:   51 LSKFDIRNFTRIEDWSIYPINSLTCGRSPCVVYNDEEDNKTLTTESKEIMKFIYFKYNSKNRLFAYKDEEKYLQSNLDFFGTYIHTWGVLSHYKYLQYLTRIIRYP-----------TRCMFIEKPKLLLKHSEQKGPDHLS-STLRDKAGTIIELNPLFQNVSEFDNEIILKVEGLLDRAEA-IISNED 227
            L   DI    + +DW +  +N    G  P  V+ D+ED +T+ TES +IMKFI  KY  +  LF      + LQS+LD  GT+  TWGV SHY+ L   T++IRYP            R MF+EKP LLL+ SE+ GP H + S LR KA  +     LF + SEF+N+++  +E +LD  E  I+S ED
Sbjct:   32 LVSVDIIAGEQFQDWFL-DLN--PKGEVPVFVHYDDEDKQTVVTESTDIMKFIDAKYEGQPVLFKESSSWESLQSSLDTLGTFALTWGVFSHYQSLSEYTKVIRYPYSKFIKFHSLVKRRMFVEKPGLLLQVSERMGPSHPAHSALRAKADALKSQTSLFYDPSEFENKVLRPLENILDHVERDILSKED 218
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BLAST of EMLSAG00000006200 vs. nr
Match: gi|225710302|gb|ACO10997.1| (Ganglioside-induced differentiation-associated protein 1 [Caligus rogercresseyi])

HSP 1 Score: 116.701 bits (291), Expect = 8.863e-28
Identity = 78/190 (41.05%), Postives = 107/190 (56.32%), Query Frame = 0 
Query:   51 LSKFDIRNFTRIEDWSIYPINSLTCGRSPCVVYNDEEDNKTLTTESKEIMKFIYFKYNSKNRLFAYKDEEKYLQSNLDFFGTYIHTWGVLSHYKYLQYLTRIIRYP-----------TRCMFIEKPKLLLKHSEQKGPDHLS-STLRDKAGTIIELNPLFQNVSEFDNEIILKVEGLLDRAEA-IISNED 227
            L   DI    + +DW +  +N    G  P  V+ D+ED +T+ TES +IMKFI  KY  +  LF      + LQS+LD  GT+  TWGV SHY+ L   T++IRYP            R MF+EKP LLL+ SE+ GP H + S LR KA  +     LF + SEF+N+++  +E +LD  E  I+S ED
Sbjct:   32 LVSVDIIAGEQFQDWFL-DLN--PKGEVPVFVHYDDEDKQTVVTESTDIMKFIDAKYEGQPVLFNESSSWESLQSSLDTLGTFALTWGVFSHYQSLSEYTKVIRYPYSKFIKFHSLVKRRMFVEKPGLLLQVSERMGPSHPAHSALRAKADALKSQTSLFYDPSEFENKVLRPLENILDHVERDILSKED 218
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006200 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006200 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006200 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000062004.883e-169100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s339:33771... [more]
EMLSAP000000010513.288e-3146.82pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:5431... [more]
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BLAST of EMLSAG00000006200 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006200 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006200 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|225710356|gb|ACO11024.1|5.471e-2841.05Ganglioside-induced differentiation-associated pro... [more]
gi|225710302|gb|ACO10997.1|8.863e-2841.05Ganglioside-induced differentiation-associated pro... [more]
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BLAST of EMLSAG00000006200 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s339supercontigLSalAtl2s339:337718..340806 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s339-snap-gene-2.26
Biotypeprotein_coding
EvidenceIEA
NoteGanglioside-induced differentiation-associated protein 1 [Caligus rogercresseyi]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006200 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006200EMLSAT00000006200-702047Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s339:337718..340806-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006200-688966 ID=EMLSAG00000006200-688966|Name=EMLSAG00000006200|organism=Lepeophtheirus salmonis|type=gene|length=3089bp|location=Sequence derived from alignment at LSalAtl2s339:337718..340806- (Lepeophtheirus salmonis)
ATGAATATAAGAAGGGATGACCTGTTATAAATTAATTAAGACACGTAATT
ATGTGTATCTATGAGATAATGATATTTATCTGTAGATTTTTGAACTGTTT
AATAGCACAGAAGCTTATCTATTTTGACTCATAGTTCTTTAAAGTTTTGT
TTTATCCAGAGCCGTTGACACACAAGGGTGGGATGGACTATTAGTGTCTT
TTAAGTCTTTAAAAGTCAAATAATACATAATTTCTAAAAAAAACACGTCC
ATTCTAACGCAAATTTTTTTCTAAAAAATGATTTTTTTTTCGGTCTCCTT
TTTTATTGTCAAAAGACATTTCATATTACAGGCCGAAAATTTTAAAAAAG
TATGCAACATCCCTTCAAAGACAAATCCTTGCGACGGCCCTGACTTTATC
TCTCCTTTGCTCCATTTCCTTTTCAATGAAGTTTCTTGCTTGTGAAGGGA
TAAAAACACTTTCAAAAGTTTTTCTTTTCTTTCATAATTGTAAGTAATTT
TTTTAAAAGTTAAAGACTTTTAAGAATTATTTTCTCTTTCAGAAAGATTA
TATATTTACTTTATAATTTTTTGTTGTTGCTTATTCTAATAGAATATTTT
ATTGTAAAATATCCTTTCAAATTCTTTTGAAGGATATGCTTCAGACTTTA
GTATACAGTGTTGACAGATGGGTTTTTTCTATTAGCTCAAAAATAAGCAA
AATTGTTTTAATAGTTAATAGATTAGGATTTTAAATATTTTAAACTCCTT
GATAAAACATTTTTCGAAGTTTCAGTGGTAAAATTAAGTTTGATCTGATC
AAAAAAGCATTATTACCCTTAAATCTCTGTTTTGAAAGAGTAAAATCATT
CGGCAGATTTTTTTTTTTGGGGGGGGGGGGGGAGGGATAGGTTCTGAAAT
AACTTTTCCGACCACATTATTTATAAAAATCAAATTGATTTTTTTTTACA
AATTTTGACATTTAATTTTTTTAGACAAAACTATAGTTTTATCTGATAGG
AGATCTGTTTGTGAGCAAAATCTCTCGTACTACGTAAAATTCTCAGGATC
TTTAGATTCAACACAGAGTACCTTGACTAAGCCACCAACCGTATTATACT
TCTATAATCTGCTCTACATAAAGTTATATTAAGAGTTAGTTTTCTTGAGA
TATATGATTTTCCACTTACAAGTGAAAAGCTTACTGCACAAACTTCTGGA
GAAGCATTTTGTTCAAGAAAATCCGAATAAAAGAACTGCCTTCAAAAAAT
TAGAGCTATAAACACCAATAGAATGAATTCTTACAATACCCATCAAAATT
AAAACAAAGGGATATTCAGTAAAAGTATAAATCATGTTACTAATAATCTT
GGATCTTCCTATATTCCTTCCATGCATGAAAAAAAAAAAAAAAACCTGTT
GAAATTTGGAATTGAGTTGTAAATTTATTGTCATCTGATACTCCAAGAGA
AAACTTTCAACTCTCTTGGACCAAGAGAATAGAAGATCCTATGAGCTTCC
AATTTTAAGATTAAACATTTTATAGTTAAAACATTGTATTTGATGGCTTT
CTCTTCTAAGTATTCAGGATCCTCATATTCTTAAATATTTTTAATTTTGT
AGTTTGATATTCGTAATTTCACAAGAATCGAAGATTGGAGTATCTATCCC
ATTAATTCATTGACCTGCGGGTAAGATGGAGAAATGCTCTTCAAACGGCT
ATTTGAAAGATTAATATCAAGCATGAGCCATTTAATGGTAAACGACCTTG
AAACACAAATCATTCATTCCTACTATTTCCGGATTTTATGAATTTCAGAC
ATAAATATTGTTGTCTATATGATAAGTGCAAAATGTAATCCTTTTGTTCT
TGCTACGAATAGAACAAGTTCATTAATATAATATATTATGACAAAAAAGT
GTAAGATCAGTGCATAATATACCGTAAAAATTATTCATTAAATTTGATTA
ACAAAAAAAAAAATAGTAAATATTTTTTAATAATGTATCTAAAAAGACAA
AAATAAACCGTCCTGTTCAGTTCCATCAATGAATCTAAAATATGGATAMT
AAAAAWATGTGGACATATTAATGGAAAAAAWATTTGCATATCTGTCGAAG
TCTTTCAAAACTCAAAAAAACTAATGAAAAGTACCTTTTTTTGCATATTA
TTTATACAATGAATCCCCAAACTTAAGAATTTTTTTTATTTCTTACCTAT
AAAATAAATGCTAAAAAACATCTTTTAATTAGGATCAATTCTTTAAAAAA
TGGTTTTTTACTTTCAATTTGTACATCTAACATCTATAAATCAAAAAAAT
AATTACTTTTATCAATTCAAACTTATTGAAGTTTTATTAGAGGATTTTAT
AAGTGAAAAAAAGGTTTGTTGGAGAAAAAGATAAACGGGACTCTTAGTAC
AACTCTTAGAAGTGATATCGTGATTGATTTTGTTTGAAAATTTCAAAAAA
TTATGCAACATTTGTTACCATATCTTCACCTAGTCAAAAGGTTTGAATTA
CTATATTTGAGAAACATATAAGTAGTATTGAGTTTAAATCTGTAGATATA
TGTAGATGGCTAAAAATTTGAAGACTGCTTCCTGGATTTTAATCCAAAAG
GAGAAGTCCCTGTGTTGTTTACAATGATGAAGAAGACAATAAAACTCTGA
CTACAGAGAGCAAGGAGATTATGAAGTTTATTTATTTCAAATATAATTCA
AAGAACAGGCTTTTTGCATATAAAGATGAAGAGAAATACCTTCAAAGTAA
CCTGGATTTTTTTGGGACTTATATTCACACGTGGGGTGTATTATCTCACT
ATAAATATCTTCAATATCTAACTCGTATTATTCGATATCCCACTGTAACT
TTATTAAATATCATTCTATTGTTAAGCGATGCATGTTCATTGAGAAACCA
AAATTACTTTTGAAACATTCGGAGCAAAAAGGTCCGGATCATCTATCCTC
TACTTTGAGGGATAAAGCGGGTACAATAATTGAGTTAAACCCTCTCTTCC
AAAATGTGTCTGAATTTGATAATGAAATCATTCTGAAGGTCGAAGGGCTG
TTGGATAGGGCTGAAGCTATTATATCTAATGAGGACTGA
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