EMLSAG00000006293, EMLSAG00000006293-689059 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006293
Unique NameEMLSAG00000006293-689059
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592855429|gb|GAXK01102115.1| (TSA: Calanus finmarchicus comp1137351_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 57.7658 bits (138), Expect = 1.084e-9
Identity = 39/128 (30.47%), Postives = 60/128 (46.88%), Query Frame = 0 
Query:    8 FSDKDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            FS  D+++ + +Y   P  +  P       I  Q    L  +NHYL++G                TG+S+   +   R+    + Y+D SK S++IA+ R +     N+ +  N I NIPEL LGKFD
Sbjct:  321 FSMSDMVREKNYYALAPDSYTRP-------IFYQHTNSLNILNHYLYKGQQMFDENFSVLAAGGGTGNSVSFLAEQLRDSSSSLTYVDLSKASMDIAKFRVQIRGLDNVKWVQNKIENIPELDLGKFD 683
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592917256|gb|GAXK01041119.1| (TSA: Calanus finmarchicus comp741026_c2_seq11 transcribed RNA sequence)

HSP 1 Score: 55.0694 bits (131), Expect = 1.132e-9
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 0 
Query:   56 GTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            GTG+S+       RN   EIVYLDFS  SL IA  R    + +N+ +   +I  +P+L LG+FD
Sbjct:   74 GTGNSVCFMGEQLRNTSAEIVYLDFSPASLAIAEQRVNIRQVENVQFVLGSIEQLPDLGLGEFD 265
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592845242|gb|GAXK01112302.1| (TSA: Calanus finmarchicus comp569264_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 56.9954 bits (136), Expect = 1.137e-9
Identity = 44/131 (33.59%), Postives = 60/131 (45.80%), Query Frame = 0 
Query:   16 VQEHYLNYPYPFVNPVNDN---------KNQIPLQKVP--YLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            V   Y  YPYP  NP++ +         K + P   +P   LE +NHYL+ G                 G + +  +    +   EIVYLDFS  S+ IA+ RA     KNI + ++ I NIP L LG FD
Sbjct:  394 VLGQYTEYPYPEFNPIHMDAERSHYANVKREGPHVVIPDLTLENLNHYLYHGDEDFQQSFRVLIAGGGIGGTAMFLAEQLNHTNAEIVYLDFSPASMKIAQGRAAIRNLKNIIFINDRIENIPNLDLGLFD 786
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592845243|gb|GAXK01112301.1| (TSA: Calanus finmarchicus comp569264_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 57.3806 bits (137), Expect = 1.644e-9
Identity = 44/131 (33.59%), Postives = 60/131 (45.80%), Query Frame = 0 
Query:   16 VQEHYLNYPYPFVNPVNDN---------KNQIPLQKVP--YLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            V   Y  YPYP  NP++ +         K + P   +P   LE +NHYL+ G                 G + +  +    +   EIVYLDFS  S+ IA+ RA     KNI + ++ I NIP L LG FD
Sbjct:  394 VLGQYTEYPYPEFNPIHMDAERSHYANVKREGPHVVIPDLTLENLNHYLYHGDEDFQQSFRVLIAGGGIGGTAMFLAEQLNHTNAEIVYLDFSPASMKIAQGRAAIRNLKNIIFINDRIENIPNLDLGLFD 786
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592917263|gb|GAXK01041112.1| (TSA: Calanus finmarchicus comp741026_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 55.0694 bits (131), Expect = 6.019e-9
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 0 
Query:   56 GTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            GTG+S+       RN   EIVYLDFS  SL IA  R    + +N+ +   +I  +P+L LG+FD
Sbjct:   74 GTGNSVCFMGEQLRNTSAEIVYLDFSPASLAIAEQRVNIRQVENVQFVLGSIEQLPDLGLGEFD 265
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592917264|gb|GAXK01041111.1| (TSA: Calanus finmarchicus comp741026_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 55.0694 bits (131), Expect = 6.458e-9
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 0 
Query:   56 GTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            GTG+S+       RN   EIVYLDFS  SL IA  R    + +N+ +   +I  +P+L LG+FD
Sbjct:   74 GTGNSVCFMGEQLRNTSAEIVYLDFSPASLAIAEQRVNIRQVENVQFVLGSIEQLPDLGLGEFD 265
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592834104|gb|GAXK01123440.1| (TSA: Calanus finmarchicus comp998215_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 49.6766 bits (117), Expect = 4.900e-7
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0 
Query:   56 GTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            GTG +        +++  +IVYLDFS  S+ +A+ R        I + ++ I NIP L LGKFD
Sbjct:  446 GTGFTACFLGSRLKDKNPQIVYLDFSAASMKVAQKRVNMRGLTGIKWLNDRIENIPNLGLGKFD 637
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592834103|gb|GAXK01123441.1| (TSA: Calanus finmarchicus comp998215_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 49.2914 bits (116), Expect = 4.955e-7
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0 
Query:   56 GTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            GTG +        +++  +IVYLDFS  S+ +A+ R        I + ++ I NIP L LGKFD
Sbjct:  354 GTGFTACFLGSRLKDKNPQIVYLDFSAASMKVAQKRVNMRGLTGIKWLNDRIENIPNLGLGKFD 545
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592795573|gb|GAXK01158995.1| (TSA: Calanus finmarchicus comp1499157_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 1.180e-6
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0 
Query:   74 EIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            EIVYLDFS  S+ IA+SRA       IS++++ I +IP+L LGKF+
Sbjct:  377 EIVYLDFSLASMKIAQSRAAMMGLSGISWYNDRIESIPQLNLGKFN 514
[Close]
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Match: gi|592795574|gb|GAXK01158994.1| (TSA: Calanus finmarchicus comp1499157_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 1.421e-6
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0 
Query:   74 EIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            EIVYLDFS  S+ IA+SRA       IS++++ I +IP+L LGKF+
Sbjct:  377 EIVYLDFSLASMKIAQSRAAMMGLSGISWYNDRIESIPQLNLGKFN 514
[Close]
BLAST of EMLSAG00000006293 vs. L. salmonis peptides
Match: EMLSAP00000006293 (pep:novel supercontig:LSalAtl2s:LSalAtl2s342:185392:186467:-1 gene:EMLSAG00000006293 transcript:EMLSAT00000006293 description:"maker-LSalAtl2s342-snap-gene-2.25")

HSP 1 Score: 246.128 bits (627), Expect = 5.517e-85
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 
Query:    1 MNYSAMLFSDKDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRGTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            MNYSAMLFSDKDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRGTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD
Sbjct:    1 MNYSAMLFSDKDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRGTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
[Close]
BLAST of EMLSAG00000006293 vs. L. salmonis peptides
Match: EMLSAP00000012234 (pep:novel supercontig:LSalAtl2s:LSalAtl2s88:714578:730796:-1 gene:EMLSAG00000012234 transcript:EMLSAT00000012234 description:"maker-LSalAtl2s88-augustus-gene-6.25")

HSP 1 Score: 120.553 bits (301), Expect = 5.849e-32
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 0 
Query:    8 FSDKDLLQVQEHYLNYPYPFVNP-VNDNKNQIPLQKVPYLEEINHYL------------FR------GTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            F++KD+ +VQE Y  YPYPFV+P +   K  IP+   P++ EINH+L            FR      GTG SLLHY+Y F   + EIVYLDFSKKSL IAR RA+N+  +NI ++H++I+NIP L LG FD
Sbjct:  947 FNEKDITKVQEQYSRYPYPFVDPKLEKTKKSIPINDGPFMLEINHFLYNGNGDLGRNKIFRILIAGGGTGYSLLHYAYVFTAYKTEIVYLDFSKKSLEIARERAKNFGYQNILFYHDSIYNIPNLKLGLFD 1077
[Close]
BLAST of EMLSAG00000006293 vs. L. salmonis peptides
Match: EMLSAP00000007230 (pep:novel supercontig:LSalAtl2s:LSalAtl2s405:149523:150842:-1 gene:EMLSAG00000007230 transcript:EMLSAT00000007230 description:"augustus_masked-LSalAtl2s405-processed-gene-1.0")

HSP 1 Score: 114.39 bits (285), Expect = 4.018e-31
Identity = 63/117 (53.85%), Postives = 76/117 (64.96%), Query Frame = 0 
Query:   21 LNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYL------------FR------GTGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            +NYPYP++ P  D+    P      L+EINHY             FR      GTGSSLLHYSY FRN  ++IVYLDFSKKSL+IAR+RAENY   NIS+ H++IFNIP+L LG FD
Sbjct:    1 MNYPYPYIKPKQDDTKSPPPIYGATLQEINHYFYNGFGDLGRTGTFRIIIAGGGTGSSLLHYSYIFRNLNVQIVYLDFSKKSLDIARARAENYGFYNISFIHSSIFNIPKLNLGIFD 117
[Close]
BLAST of EMLSAG00000006293 vs. L. salmonis peptides
Match: EMLSAP00000003023 (pep:novel supercontig:LSalAtl2s:LSalAtl2s171:479458:480879:-1 gene:EMLSAG00000003023 transcript:EMLSAT00000003023 description:"augustus_masked-LSalAtl2s171-processed-gene-4.0")

HSP 1 Score: 113.235 bits (282), Expect = 1.249e-30
Identity = 58/134 (43.28%), Postives = 83/134 (61.94%), Query Frame = 0 
Query:    8 FSDKDLLQVQEHYLNYPYPFVNPVNDNK----NQIPLQKVPYLEEINHYLFRG------------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
               KDL QV   Y N PYPFVN   + K    +Q+P    P+++E+NH++++G                  TG+SLLHY+Y F++ ++EI+YLDFSKKS+ IAR R +NY   N  ++HN+IFNIP++ LG FD
Sbjct:   26 LGAKDLKQVHTQYTNLPYPFVNTKRERKIGKLHQLP---GPHIQELNHFIYKGNGDLGRTKVFRILIAGGGTGASLLHYAYIFKHYKVEIIYLDFSKKSMEIARERVKNYGXSNXKFYHNSIFNIPKMNLGSFD 156
[Close]
BLAST of EMLSAG00000006293 vs. L. salmonis peptides
Match: EMLSAP00000005135 (pep:novel supercontig:LSalAtl2s:LSalAtl2s270:730116:732102:1 gene:EMLSAG00000005135 transcript:EMLSAT00000005135 description:"maker-LSalAtl2s270-augustus-gene-6.26")

HSP 1 Score: 90.5077 bits (223), Expect = 3.678e-22
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 0 
Query:   11 KDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            +D   V +HY  +PYP V+   +N ++ P    P + EINHY+  G                TG+S LHY+Y FR   +EIV+LD S+ SL IAR RA+    K I + HN+++NIP+L LGKFD
Sbjct:   25 QDYPDVLQHYTEFPYPPVSVEKENISEPPFISGPSIGEINHYIHGGKLRIEREYRILVVGGGTGNSSLHYAYEFRKFNVEIVHLDISEASLEIARQRADKRGSK-IRFIHNSLYNIPKLNLGKFD 148
[Close]
BLAST of EMLSAG00000006293 vs. nr
Match: gi|692429337|ref|WP_032138643.1| (methyltransferase [Rickettsia tamurae])

HSP 1 Score: 95.1301 bits (235), Expect = 1.231e-20
Identity = 49/125 (39.20%), Postives = 75/125 (60.00%), Query Frame = 0 
Query:   11 KDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            KDL +VQEHY +YPYPF +P  + +  + +    +L E+NH+L++G                TG S ++ +   +++  EI+YLDFSK S+ +A+ RAE    KNI + +++I NIP L LGKFD
Sbjct:   14 KDLAEVQEHYQDYPYPFRDPSQEKERLLAICG-EFLGELNHFLYKGKENFNNNFRCLIAGGGTGDSTIYLAEQLKDKNAEIIYLDFSKPSMEVAQKRAEVRGLKNIKWINDSILNIPNLKLGKFD 137
[Close]
BLAST of EMLSAG00000006293 vs. nr
Match: gi|504039527|ref|WP_014273521.1| (methyltransferase [Rickettsia slovaca] >gi|360041911|gb|AEV92293.1| Putative methyltransferase [Rickettsia slovaca 13-B] >gi|379774358|gb|AFD19714.1| Putative methyltransferase [Rickettsia slovaca str. D-CWPP])

HSP 1 Score: 94.7449 bits (234), Expect = 1.446e-20
Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   11 KDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            KDL +VQEHY +YPYPF +P N  K  +      +L E+NH+L++G                TG S ++ +   +++  EI+YLDFSK S+ +A+ RAE    KNI + +++I NIP L LGKFD
Sbjct:   14 KDLAEVQEHYQDYPYPFRDP-NQEKEYLLATCGEFLGELNHFLYQGKENFNNNFRCLIAGGGTGDSTIYLAEQLKDKNAEIIYLDFSKPSMEVAQKRAEVRGLKNIKWINDSILNIPNLKLGKFD 137
[Close]
BLAST of EMLSAG00000006293 vs. nr
Match: gi|499284316|ref|WP_010977376.1| (methyltransferase [Rickettsia conorii] >gi|15619856|gb|AAL03298.1| unknown [Rickettsia conorii str. Malish 7])

HSP 1 Score: 94.7449 bits (234), Expect = 1.475e-20
Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   11 KDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            KDL +VQEHY +YPYPF +P N  K  +      +L E+NH+L++G                TG S ++ +   +++  EI+YLDFSK S+ +A+ RAE    KNI + +++I NIP L LGKFD
Sbjct:   14 KDLAEVQEHYQDYPYPFRDP-NQEKEYLLATCGEFLGELNHFLYQGKENFNNNFRCLIAGGGTGDSTIYLAEQLKDKNAEIIYLDFSKPSMEVAQKRAEVRGLKNIKWINDSILNIPNLKLGKFD 137
[Close]
BLAST of EMLSAG00000006293 vs. nr
Match: gi|491139968|ref|WP_004998384.1| (MULTISPECIES: methyltransferase [spotted fever group] >gi|28263017|gb|EAA26521.1| hypothetical protein rsib_orf1386 [Rickettsia sibirica 246] >gi|378936381|gb|AFC74881.1| hypothetical protein MC1_03900 [Rickettsia parkeri str. Portsmouth] >gi|788125576|gb|KJV93571.1| ubiE/COQ5 methyltransferase family protein [Rickettsia parkeri str. Grand Bay] >gi|788127528|gb|KJV95502.1| ubiE/COQ5 methyltransferase family protein [Rickettsia parkeri str. AT#24] >gi|788133318|gb|KJW01132.1| ubiE/COQ5 methyltransferase family protein [Rickettsia parkeri str. Tate's Hell])

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-20
Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   11 KDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            KDL +VQEHY +YPYPF +P N  K  +      +L E+NH+L++G                TG S ++ +   +++  EI+YLDFSK S+ +A+ RAE    KNI + +++I NIP L LGKFD
Sbjct:   14 KDLAEVQEHYQDYPYPFRDP-NQEKEYLLATCGEFLGELNHFLYQGKENFNNNFRCLIAGGGTGDSTIYLAEQLKDKNAEIIYLDFSKPSMEVAQKRAEVRGLKNIKWINDSILNIPNLKLGKFD 137
[Close]
BLAST of EMLSAG00000006293 vs. nr
Match: gi|515493083|ref|WP_016926337.1| (methyltransferase [Rickettsia conorii])

HSP 1 Score: 94.7449 bits (234), Expect = 1.583e-20
Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   11 KDLLQVQEHYLNYPYPFVNPVNDNKNQIPLQKVPYLEEINHYLFRG----------------TGSSLLHYSYTFRNRRIEIVYLDFSKKSLNIARSRAENYECKNISYHHNTIFNIPELCLGKFD 119
            KDL +VQEHY +YPYPF +P N  K  +      +L E+NH+L++G                TG S ++ +   +++  EI+YLDFSK S+ +A+ RAE    KNI + +++I NIP L LGKFD
Sbjct:   14 KDLAEVQEHYQDYPYPFRDP-NQEKEYLLATCGEFLGELNHFLYQGKENFNNNFRCLIAGGGTGDSTIYLAEQLKDKNAEIIYLDFSKPSMEVAQKRAEVRGLKNIKWINDSILNIPNLKLGKFD 137
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006293 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006293 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 23
Match NameE-valueIdentityDescription
gi|592855429|gb|GAXK01102115.1|1.084e-930.47TSA: Calanus finmarchicus comp1137351_c0_seq1 tran... [more]
gi|592917256|gb|GAXK01041119.1|1.132e-942.19TSA: Calanus finmarchicus comp741026_c2_seq11 tran... [more]
gi|592845242|gb|GAXK01112302.1|1.137e-933.59TSA: Calanus finmarchicus comp569264_c3_seq2 trans... [more]
gi|592845243|gb|GAXK01112301.1|1.644e-933.59TSA: Calanus finmarchicus comp569264_c3_seq1 trans... [more]
gi|592917263|gb|GAXK01041112.1|6.019e-942.19TSA: Calanus finmarchicus comp741026_c2_seq4 trans... [more]
gi|592917264|gb|GAXK01041111.1|6.458e-942.19TSA: Calanus finmarchicus comp741026_c2_seq3 trans... [more]
gi|592834104|gb|GAXK01123440.1|4.900e-737.50TSA: Calanus finmarchicus comp998215_c0_seq1 trans... [more]
gi|592834103|gb|GAXK01123441.1|4.955e-737.50TSA: Calanus finmarchicus comp998215_c0_seq2 trans... [more]
gi|592795573|gb|GAXK01158995.1|1.180e-652.17TSA: Calanus finmarchicus comp1499157_c0_seq2 tran... [more]
gi|592795574|gb|GAXK01158994.1|1.421e-652.17TSA: Calanus finmarchicus comp1499157_c0_seq1 tran... [more]

Pages

back to top
BLAST of EMLSAG00000006293 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000062935.517e-85100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s342:18539... [more]
EMLSAP000000122345.849e-3249.62pep:novel supercontig:LSalAtl2s:LSalAtl2s88:714578... [more]
EMLSAP000000072304.018e-3153.85pep:novel supercontig:LSalAtl2s:LSalAtl2s405:14952... [more]
EMLSAP000000030231.249e-3043.28pep:novel supercontig:LSalAtl2s:LSalAtl2s171:47945... [more]
EMLSAP000000051353.678e-2241.60pep:novel supercontig:LSalAtl2s:LSalAtl2s270:73011... [more]
back to top
BLAST of EMLSAG00000006293 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006293 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006293 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|692429337|ref|WP_032138643.1|1.231e-2039.20methyltransferase [Rickettsia tamurae][more]
gi|504039527|ref|WP_014273521.1|1.446e-2040.80methyltransferase [Rickettsia slovaca] >gi|3600419... [more]
gi|499284316|ref|WP_010977376.1|1.475e-2040.80methyltransferase [Rickettsia conorii] >gi|1561985... [more]
gi|491139968|ref|WP_004998384.1|1.505e-2040.80MULTISPECIES: methyltransferase [spotted fever gro... [more]
gi|515493083|ref|WP_016926337.1|1.583e-2040.80methyltransferase [Rickettsia conorii][more]

Pages

back to top
BLAST of EMLSAG00000006293 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s342supercontigLSalAtl2s342:185392..186467 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s342-snap-gene-2.25
Biotypeprotein_coding
EvidenceIEA
Notesyc1184_c [Caligus rogercresseyi]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006293 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006293EMLSAT00000006293-702140Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s342:185392..186467-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006293-689059 ID=EMLSAG00000006293-689059|Name=EMLSAG00000006293|organism=Lepeophtheirus salmonis|type=gene|length=1076bp|location=Sequence derived from alignment at LSalAtl2s342:185392..186467- (Lepeophtheirus salmonis)
ATGAACTACTCTGCAATGGTAATAAAAACTAAATATTATTTCCAAAATAG
TATATTATAATATATGGCCGGAAGAGAATAAGAAACAGTATTTTAAAAAA
AACGCACTTTAAAAGTATATATCTTCACGGGAGAGGACTTATTATTTCTA
TGATAAAATCCATTCAAAAACATAATTTTTTAAAGAATCAATTGATGCAG
CTAGGTTTCTTTTTTATGGTTTACTTTTCTGTGAAAATTAACTTCCCAGC
ATTTGATTTTTTTATCATATTCCTGGAACTAAATCCAAATAAAACAAGTC
AGATTAGGTTGTAATAATTTTCCACTAATCAATTATATCATCAACTTATT
TCATAGAATCATAGGTAAATCCTTACTTCCACAATCATCATTCATCACTA
TCGGAAGGAAGTTTGTGATCAAGACACATTTTTCATATTTCTATAAAATT
ACTTGCAATATTTTGATTGTAAAATTTTTTTTTTTATATTTGATTGATAA
TTCTTATACTATAACTATATTTTTGTTGGCTTATTCGGAAGAGCAGTGTA
ATTGATTATATGATGATTTAAAATTGGAATCTTTGGGTTAAGGCAATGTA
TTTGAAGGATTAAAATGGTTCAATTCAGTAGACTTTTTCTTTTGGAAATC
ATGCAATGGAAATAATGTTAATATATCAAAGCTATTCTCAGATAAAGACC
TACTTCAAGTCCAAGAACATTATTTGAACTACCCTTATCCTTTTGTGAAT
CCTGTTAATGATAATAAAAATCAAATACCACTACAAAAGGTACCATATTT
AGAAGAAATAAACCATTATCTCTTCCGTGGAAAAGGAGATCTTGGACGAG
TAAAATATTTATAATTTTAATTGCTGGAGGTGGGACTGGCTCAAGCCTTT
TGCATTATTCTTATACATTTAGAAATCGAAGGATAGAAATCGTTTATTTG
GATTTTTCAAAAAAATCTTTGAATATTGCACGATCAAGAGCAGAAAACTA
TGAATGCAAAAATATTTCGTATCATCATAACACCATATTTAATATACCAG
AGCTTTGTCTAGGCAAATTTGATTAG
back to top
Add to Basket