EMLSAG00000006953, EMLSAG00000006953-689719 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006953
Unique NameEMLSAG00000006953-689719
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AF F228 6953 female
  1. PreAdult2
 -Missing-
-Missing- 		27.04.2016 - 09:53
08.06.2016 - 09:53
Homology
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BLAST of EMLSAG00000006953 vs. C. finmarchicus
Match: gi|592893125|gb|GAXK01065250.1| (TSA: Calanus finmarchicus comp708622_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 4.845e-1
Identity = 14/48 (29.17%), Postives = 26/48 (54.17%), Query Frame = 0 
Query:   46 AAPRCFDRNRCCPRY---RHCCRNSRVRSV-CPKTCRVCTATTTCQNK 89
             +  C+D N+ CP +     C R++   +V CPK+C +C+     +N+
Sbjct: 1530 GSSSCYDYNQYCPSWAKSGECSRSAYYMNVYCPKSCGICSGGGDGENE 1673
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BLAST of EMLSAG00000006953 vs. L. salmonis peptides
Match: EMLSAP00000006953 (pep:novel supercontig:LSalAtl2s:LSalAtl2s394:228802:229265:-1 gene:EMLSAG00000006953 transcript:EMLSAT00000006953 description:"maker-LSalAtl2s394-augustus-gene-2.7")

HSP 1 Score: 221.476 bits (563), Expect = 2.399e-75
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:    1 MRLSVLLFACLCITLVHCQKNTKIVPQVKTTKGVVTTTPIVTTTTAAPRCFDRNRCCPRYRHCCRNSRVRSVCPKTCRVCTATTTCQNKSRFCFSPRFCFSFFYRRACRRTCGVC 115
            MRLSVLLFACLCITLVHCQKNTKIVPQVKTTKGVVTTTPIVTTTTAAPRCFDRNRCCPRYRHCCRNSRVRSVCPKTCRVCTATTTCQNKSRFCFSPRFCFSFFYRRACRRTCGVC
Sbjct:    1 MRLSVLLFACLCITLVHCQKNTKIVPQVKTTKGVVTTTPIVTTTTAAPRCFDRNRCCPRYRHCCRNSRVRSVCPKTCRVCTATTTCQNKSRFCFSPRFCFSFFYRRACRRTCGVC 115
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006953 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006953 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592893125|gb|GAXK01065250.1|4.845e-129.17TSA: Calanus finmarchicus comp708622_c1_seq2 trans... [more]
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BLAST of EMLSAG00000006953 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000069532.399e-75100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s394:22880... [more]
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BLAST of EMLSAG00000006953 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006953 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006953 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006953 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s394supercontigLSalAtl2s394:228802..229265 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s394-augustus-gene-2.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006953 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006953EMLSAT00000006953-702800Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s394:228802..229265-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006953-689719 ID=EMLSAG00000006953-689719|Name=EMLSAG00000006953|organism=Lepeophtheirus salmonis|type=gene|length=464bp|location=Sequence derived from alignment at LSalAtl2s394:228802..229265- (Lepeophtheirus salmonis)
ATGCGACTGTCTGTGCTGTTATTTGCCTGTTTGTGTATAACGCTGGTTCA
TTGTCAGAGTAAGTTATTTTCAATATATTTGATATTTGTTTTCAATTAGA
TATTTAAAATTTAAGAGAATACAAAGATTGTTCCACAAGTCAAAACAACC
AAAGGGGTTGTTACAACTACACCAATTGTCACCACAACAACAGCTGCTCC
AAGTATTTTTATTTTTTCTATTATTTCTTTTATTTACGTATAATATTTTA
ATTTATATCAGGATGCTTTGATCGCAATCGTTGCTGCCCACGGTATAGAC
ATTGCTGTCGAAATTCGAGGGTACGAAGTGTTTGTCCAAAAACATGTAGA
GTTTGTACGGCAACTACTACCTGCCAAAACAAAAGTCGGTTTTGTTTTTC
GCCAAGATTTTGCTTTTCATTCTTCTACAGGAGGGCTTGTAGAAGAACAT
GCGGAGTCTGCTAA
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