EMLSAG00000007566, EMLSAG00000007566-690332 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007566
Unique NameEMLSAG00000007566-690332
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007566 vs. C. finmarchicus
Match: gi|592923003|gb|GAXK01035386.1| (TSA: Calanus finmarchicus comp1431881_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.009e+0
Identity = 9/24 (37.50%), Postives = 18/24 (75.00%), Query Frame = 0 
Query:   31 SDKRLFPHMGNKFQHFQSNNMQLK 54
            SDKR +PH+G + +H+ + N +++
Sbjct:   57 SDKREYPHLGPQLEHWVAENDKVR 128
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BLAST of EMLSAG00000007566 vs. L. salmonis peptides
Match: EMLSAP00000007566 (pep:novel supercontig:LSalAtl2s:LSalAtl2s436:536667:539290:-1 gene:EMLSAG00000007566 transcript:EMLSAT00000007566 description:"maker-LSalAtl2s436-augustus-gene-4.35")

HSP 1 Score: 202.986 bits (515), Expect = 1.407e-68
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 
Query:    1 MKRYLSLVLLLHLFFSSSAQDELINYFNKLSDKRLFPHMGNKFQHFQSNNMQLKTNGTEILNFSLLGQLYPYQKENPCGCKCYDNETKKIKNVCNXCHYK 100
            MKRYLSLVLLLHLFFSSSAQDELINYFNKLSDKRLFPHMGNKFQHFQSNNMQLKTNGTEILNFSLLGQLYPYQKENPCGCKCYDNETKKIKNVCNXCHYK
Sbjct:    1 MKRYLSLVLLLHLFFSSSAQDELINYFNKLSDKRLFPHMGNKFQHFQSNNMQLKTNGTEILNFSLLGQLYPYQKENPCGCKCYDNETKKIKNVCNXCHYK 100
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007566 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007566 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592923003|gb|GAXK01035386.1|2.009e+037.50TSA: Calanus finmarchicus comp1431881_c0_seq8 tran... [more]
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BLAST of EMLSAG00000007566 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000075661.407e-68100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s436:53666... [more]
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BLAST of EMLSAG00000007566 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007566 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007566 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007566 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s436supercontigLSalAtl2s436:536667..539290 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s436-augustus-gene-4.35
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007566 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007566EMLSAT00000007566-703413Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s436:536667..539290-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007566-690332 ID=EMLSAG00000007566-690332|Name=EMLSAG00000007566|organism=Lepeophtheirus salmonis|type=gene|length=2624bp|location=Sequence derived from alignment at LSalAtl2s436:536667..539290- (Lepeophtheirus salmonis)
ATGAAAAGATACCTCTCCTTGGTCTTACTTCTACACCTTTTTTTCTCTTC
TTCGGCTCAAGATGAGCTCATAAATTACTTCAATAAATTATCAGGTAATT
ATTTTATATAACAAAAGGGGTCTATAGTATTGTTGGATTTCCCAATAACT
ATCTCCTTAATTCGATTAGTGAGCATAAAATCAATTGCTTTACTATTACA
AGGATATATTCCCAGACATTCATTTTCAATTACTATACTTTTTAGATAAA
AGACTCTTTCCACATATGGGGAACAAATTTCAGCACTTTCAATCCAACAA
TATGTAAGTTTTTGTATATAAGATAGTTCTTTAAATGTTATTTGTTTATG
TAAGTATGTAATCTACTACATCACATCCACAGGCAGTTAAAAACGAATGG
AACAGAAATTCTCAATTTCAGTCTCTTAGGACAACTATATCCGTACCAAA
AAGAGAATCCATGTGGATGCAAGTAAGAAATCATCACTCTTTCAGGGCCG
TGGGAATAAGGGAGGGGGGGGGGGAGAGARAGTAAATAGGGTATTTGGTT
CCATCAATAATGATTATCAATGTTGAAATTTAAAGTTTTTACGTCATAAT
AAATTGCAACTTATCCCTTCCCTTCTAACTTTCTAGTGCATTTATATCCG
AAAATTATCCTTATTTTAAATTTATTTAAAATTGTACTTGTATCCACAAA
TTTTATTTGTTGATRTTTCTTGCATCACCTCCATATCTGCATTTTTAGAT
ATTTTCTATTCTAAATATTACACAACAGAATATTTCTATCATAGAAAAAT
TCTCAGTATTTTTATATGTATATTCAATTCATCACTACTTTGTACCTACT
CGTTGCATAATTATAAGCACTAATAGGCTTAATTAATCTCTCATGTTCAT
TATTTGAACCATTGTCTAGCCTTAGAACTTCAAAAAATAAAATTTTAATT
AGTAATTACAGGATATTATCTAAGAGAGACCTTTTGCGGATTCTTTTTTA
TTATTATTTCTGTTTGGGCTTAATGATGATCTACAATCATAGAGCATGAG
TTATTACATAGTTAGATACAACCTTTGATGTGTTCGTCAATCTTAGGTAG
AAATATTACCATACATAAAAGAATAATGTCAATCCAGCTTTTTATATACA
TGACTCATTTTCTCACCCCTATTTTGTTGCAAAGATATTTTTTTATACCT
TAAAATGCATCAACATTCATGAGAAGGACTAACCGAATTCTCACGGATAG
TGTCTTGGAGTATGTGGTAGTTGTTTAATTTTGTATATTAAATACCTACA
TAAGTAGTCGTCCTCATTAATTTGGATTAAAATGTTGGCTCATTTTGACA
TTTTTTAATTAATATTTTGATGCATAAAGTAATATGGTATATAGTAGGAT
ATATATATGATATGCAAATATAATTTAAAGGNAACTATTTTCACGCCTGA
GTGGAGTGTAGAAACTCTCTTAAATCCGAGTATATACAATTACACTGATT
ATTTGAGGGCTGAAAAATAGATCGGCCGKTATTTTTGTTTTCCAATTAGC
TATTGAATCAAACAATTGCACAAGTACGACATTTCAGCAATGGTCAAAAT
TATTTAGACACATTTTATCCTAGAATTTGACAATTCTCTGATGTAGGTTT
GTTGTTTTAATGGCTCGTGTTGTCCCATATAGGATTTTCTGCAATTGCTT
AGTTTTTTTGTGTTTTTTTTGCAATAAATGCTCATTAGTACTCCAAAAAC
CATGTAAATTATGCCTATGGAAAGTGAAGTCAAATAATTGAATTTACGTT
GATCATTATTAAGATTAATTAAAAGGAAAATTAATTTTCAAAAATGGCTG
TAACGGCAATGTTAGGGGGTTCAATGATAGAGCAATTAAAAATTTGTAAT
TTTATTTTTTGGAAATTATTTAGATTTTTCGGAAAAGTAAAGAAGGAAAA
TAAATCGGCAATTCCGCTGATTAACGATTGGTATAAAACTATTTTAAATC
AATCATTAGTCCAATGGTAAATAATGTAGGTAATATAAATCTCTGAGTAA
TGTTAAAAACGTTAATTTTTAAATGGAAAATTCATTTAAATTCTATGGAT
CATGTTTCAAGATGAAAATCATCTCTGAATATATATGTACCTATGAGCTG
ATAGATTATAGTATGTATTATTCTTTCTGCATTTTAATGGGTTTTTTACT
TTAAAAAAATGTAGAAAATAAATGAAGGAGGAGGAACAAGGATTGATCGT
GATGGATGGGCTCATTCTTTTAAGCAAAATATTGATCAATTTTATAGGCA
TTTTTGATTTATTTTCCCTTCAATTATTTGCAAACAGCTTAAATTTATGA
TTATTTCCCTACATATACACTTCCTTTTAAATAGGAAATGTTATAAGATT
ATCAGTTTAAAATTTGGCGTGTCTAGAATAAAATCAATTCAAATTATACC
CACCTCCAACACAAAAGATGTTTTCTAATTTTTCGTTACTAAATATTTGT
CTGACAAGGGTCATTGCCGAGCTTTGTTGACATAAGTTATAATATGTATA
TTCATGTAAATTTCAGATGCTATGACAATGAGACAAAAAAGATCAAAAAT
GTATGTAACAYCTGCCACTACAAA
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