EMLSAG00000008035, EMLSAG00000008035-690801 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592838164|gb|GAXK01119380.1| (TSA: Calanus finmarchicus comp2498093_c0_seq1 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 1.481e-9 Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 0 Query: 1 MATREKDCDSPCNFQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLALKIKKSAIARLQAYK 92 + ++ DC +PC F + A +++ + N S +Y S+ Q+N E LY L AEIGGYVG+LLG + + LA I ++ YK Sbjct: 328 ITNQQGDCPNPCTFLSI-TAGGQNRESAPANQSQVYLYFQSKTQINEESLLYTTLSLFAEIGGYVGLLLGVAIFHLADLINLFIDNKISGYK 600
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592930197|gb|GAXK01028348.1| (TSA: Calanus finmarchicus comp2974903_c0_seq1 transcribed RNA sequence) HSP 1 Score: 55.0694 bits (131), Expect = 5.028e-9 Identity = 31/92 (33.70%), Postives = 44/92 (47.83%), Query Frame = 0 Query: 1 MATREKDCDSPCNFQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLALKIKKSAIARLQAYK 92 + ++ DC +PC F V ++ N S Y S+ +N E LY L AEIGGYVG+LLG + + LA I R+ Y+ Sbjct: 1038 ITNQQADCPNPCAFLAVTAGGQNREEF-HSNKSQVYFYFQSKTMINEESLLYTALSLFAEIGGYVGLLLGVAIFHLADMINLFLDTRIDGYQ 1310
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592933559|gb|GAXK01024994.1| (TSA: Calanus finmarchicus comp5444261_c0_seq1 transcribed RNA sequence) HSP 1 Score: 44.2838 bits (103), Expect = 5.940e-6 Identity = 23/72 (31.94%), Postives = 36/72 (50.00%), Query Frame = 0 Query: 8 CDSPCNFQMV--NVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLA 77 C +PC+F + + + + + Y V+V E LY L AE+GGYVG+LLG S +++A Sbjct: 248 CKNPCSFSNMYFGPPVVGESEPELADRARMVFYFRRSVKVTREFVLYTVLSLVAEVGGYVGLLLGFSVFNIA 463
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592881982|gb|GAXK01076250.1| (TSA: Calanus finmarchicus comp6008505_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.8986 bits (102), Expect = 8.807e-6 Identity = 26/92 (28.26%), Postives = 41/92 (44.57%), Query Frame = 0 Query: 1 MATREKDCDSPCNFQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLALKIKKSAIARLQAYK 92 + ++ DC PC V V + + N S Y + E +LY L AEIGGY+G++LG + + A I +R+ Y+ Sbjct: 47 ITNQQDDCPKPCENLAVTVGGRNREPLP-NNQSQVYFYFQPITTIYQESFLYTALSLFAEIGGYLGLMLGVAIFHTADLINMLLDSRITKYQ 319
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592921320|gb|GAXK01037055.1| (TSA: Calanus finmarchicus comp6442351_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.1282 bits (100), Expect = 3.150e-5 Identity = 17/44 (38.64%), Postives = 31/44 (70.45%), Query Frame = 0 Query: 33 SMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDL 76 ++ TV + + ++V+T++Y Y FL AE+GGY+G+ +G S Y + Sbjct: 617 TVITVRISTNIKVSTQYYTYTFLSLMAELGGYIGLFVGASAYSI 748
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592783850|gb|GAXK01170718.1| (TSA: Calanus finmarchicus comp4394078_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 7.205e-3 Identity = 23/72 (31.94%), Postives = 35/72 (48.61%), Query Frame = 0 Query: 8 CDSPCNFQMVNVA-SITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLAL 78 C PC + +A +++ N T+Y + ++V E FL AE+GGY+G+ LG S DL L Sbjct: 87 CQRPCTDMNLRLALQSRTRREDTTNTVQLTLY--TDIEVYREVMPKTFLTLVAEVGGYLGLTLGVSLLDLKL 296
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592810919|gb|GAXK01143649.1| (TSA: Calanus finmarchicus comp525291_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 1.112e-2 Identity = 16/34 (47.06%), Postives = 22/34 (64.71%), Query Frame = 0 Query: 43 VQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDL 76 + V E Y FL+ AEIGGY+G+ LG S +D+ Sbjct: 19 IDVTVEVKSYKFLNMVAEIGGYLGLTLGVSLHDV 120
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592858231|gb|GAXK01099331.1| (TSA: Calanus finmarchicus comp2326523_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 2.896e-2 Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = 0 Query: 37 VYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXS 72 +Y S++ V + + Y FL AE+GG+VG+ LG S Sbjct: 188 IYFKSKMVVTEQFWAYGFLAYIAEMGGFVGLFLGYS 295
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592815773|gb|GAXK01138795.1| (TSA: Calanus finmarchicus comp3998151_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 3.345e-2 Identity = 24/72 (33.33%), Postives = 33/72 (45.83%), Query Frame = 0 Query: 9 DSPCN---FQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLA 77 SPC+ Q + AS T+ K + + + + V V Y L AEIGGYVG+ LG S +A Sbjct: 95 GSPCSSMAVQFGSTASTTTTK--YGDTAYLALNFKKTVMVIKSSIPYGILSMVAEIGGYVGLFLGISIQQIA 304
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Match: gi|592885780|gb|GAXK01072595.1| (TSA: Calanus finmarchicus comp3476534_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 4.925e-1 Identity = 18/70 (25.71%), Postives = 34/70 (48.57%), Query Frame = 0 Query: 10 SPCNFQMVNVASITSQKISFK------NISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSF 73 +PC+ M++ + + ++ N S+ T+ LP+ + E+ + D IGGY+G+ LG S Sbjct: 701 TPCDKSMMSFGPVQTSDLTRTSHHEDVNASI-TINLPATIYQTKEYIKFDITDLEGNIGGYLGLYLGVSL 907
BLAST of EMLSAG00000008035 vs. L. salmonis peptides
Match: EMLSAP00000008035 (pep:novel supercontig:LSalAtl2s:LSalAtl2s478:582:6278:-1 gene:EMLSAG00000008035 transcript:EMLSAT00000008035 description:"maker-LSalAtl2s478-snap-gene-0.19") HSP 1 Score: 212.231 bits (539), Expect = 4.374e-72 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 Query: 1 MATREKDCDSPCNFQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLALKIKKSAIARLQAYKTTDEVMAFEKY 103 MATREKDCDSPCNFQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLALKIKKSAIARLQAYKTTDEVMAFEKY Sbjct: 1 MATREKDCDSPCNFQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLALKIKKSAIARLQAYKTTDEVMAFEKY 103
BLAST of EMLSAG00000008035 vs. L. salmonis peptides
Match: EMLSAP00000008517 (pep:novel supercontig:LSalAtl2s:LSalAtl2s524:54349:80630:-1 gene:EMLSAG00000008517 transcript:EMLSAT00000008517 description:"maker-LSalAtl2s524-augustus-gene-0.18") HSP 1 Score: 63.929 bits (154), Expect = 6.125e-13 Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 0 Query: 1 MATREKDCDSPCNFQMVNVASITSQKISFKNISMYTV---YLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLALKIKKSAIARLQAYKTTD 95 + +E DC +PCNF ++ S+ + + +N S Y Y RV ++ E+YLY L AEIGGY+G+L+G S ++ A I ++ YKT + Sbjct: 300 ITNQESDCPNPCNFLLI---SVGDKNVLLRNGSKYAYIFYYFAPRVTISKENYLYSGLSVFAEIGGYMGLLMGISLFNSAEWIGNIIQNKINKYKTKN 394
BLAST of EMLSAG00000008035 vs. L. salmonis peptides
Match: EMLSAP00000006377 (pep:novel supercontig:LSalAtl2s:LSalAtl2s34:427505:445052:-1 gene:EMLSAG00000006377 transcript:EMLSAT00000006377 description:"maker-LSalAtl2s34-augustus-gene-4.26") HSP 1 Score: 60.077 bits (144), Expect = 6.184e-12 Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 0 Query: 4 REKDCDSPCNFQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEIGGYVGILLGXSFYDLAL 78 R DC PC++ +VNV T + K+ +Y +Y RV V EHYLY L AEIGGY G+ LG S Y +AL Sbjct: 249 RWNDCLDPCHYMIVNVGGKTVNPAT-KDTYVY-LYFAHRVLVTKEHYLYDLLSLFAEIGGYCGLFLGYSAYHIAL 321
BLAST of EMLSAG00000008035 vs. L. salmonis peptides
Match: EMLSAP00000008505 (pep:novel supercontig:LSalAtl2s:LSalAtl2s524:148477:156092:1 gene:EMLSAG00000008505 transcript:EMLSAT00000008505 description:"maker-LSalAtl2s524-augustus-gene-1.36") HSP 1 Score: 51.6026 bits (122), Expect = 5.491e-9 Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 0 Query: 1 MATREKDCDSPCNFQMVNVASITSQKISFKNISMYTVYLPSRVQVNTEHYLYLFLDAAAEI 61 + +EKDC +PC+F ++N+ ++ NIS + Y S+V +N EHYLY L AEI Sbjct: 297 ITNQEKDCPNPCDFFLINIGDKNFLRLENPNISYSSYYFASKVTLNEEHYLYSGLVLFAEI 357 The following BLAST results are available for this feature:
BLAST of EMLSAG00000008035 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000008035 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 13
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BLAST of EMLSAG00000008035 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 4
BLAST of EMLSAG00000008035 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000008035 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000008035 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000008035 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s478:582..6278- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000008035-690801 ID=EMLSAG00000008035-690801|Name=EMLSAG00000008035|organism=Lepeophtheirus salmonis|type=gene|length=5697bp|location=Sequence derived from alignment at LSalAtl2s478:582..6278- (Lepeophtheirus salmonis)back to top Add to Basket
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