EMLSAG00000008222, EMLSAG00000008222-690988 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008222
Unique NameEMLSAG00000008222-690988
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Match: EMLSAP00000008222 (pep:novel supercontig:LSalAtl2s:LSalAtl2s495:187961:189131:1 gene:EMLSAG00000008222 transcript:EMLSAT00000008222 description:"augustus-LSalAtl2s495-processed-gene-2.6")

HSP 1 Score: 402.519 bits (1033), Expect = 5.285e-144
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MGPRQYFKEKPHLRIDPIIKVHISWSTPAGKDRKEEREKDRDRNKKREKDRDRNKEREKDRDRNKEREKEKSRGSKRVCAIPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSNDFELLDLNARKKLKSYAVPSLSILVASPSSDEPYPSRDIRKETWERKELVKQLLEGPGNQYSLGNRG 198
            MGPRQYFKEKPHLRIDPIIKVHISWSTPAGKDRKEEREKDRDRNKKREKDRDRNKEREKDRDRNKEREKEKSRGSKRVCAIPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSNDFELLDLNARKKLKSYAVPSLSILVASPSSDEPYPSRDIRKETWERKELVKQLLEGPGNQYSLGNRG
Sbjct:    1 MGPRQYFKEKPHLRIDPIIKVHISWSTPAGKDRKEEREKDRDRNKKREKDRDRNKEREKDRDRNKEREKEKSRGSKRVCAIPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSNDFELLDLNARKKLKSYAVPSLSILVASPSSDEPYPSRDIRKETWERKELVKQLLEGPGNQYSLGNRG 198          
BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Match: EMLSAP00000002915 (pep:novel supercontig:LSalAtl2s:LSalAtl2s167:417749:418522:1 gene:EMLSAG00000002915 transcript:EMLSAT00000002915 description:"augustus-LSalAtl2s167-processed-gene-4.5")

HSP 1 Score: 160.614 bits (405), Expect = 1.967e-48
Identity = 87/117 (74.36%), Postives = 90/117 (76.92%), Query Frame = 0
Query:   81 IPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSNDF------ELLDLNARKKLKSYAVPSLSILVASPSSDEPYPSRDIRKETWERKELVKQLLEGPGNQ 191
            + CC +  DAQYFA PQK LM QRLWISVCRRKD INIK A+ICDRHFTSNDF      ELLDL ARKKLKS AVPSL I  ASPSSDEP  SRDIRKET ERKELVKQLLE    Q
Sbjct:    1 MACCPNPRDAQYFAFPQKKLMLQRLWISVCRRKDSINIKNAKICDRHFTSNDFERNLQAELLDLKARKKLKSDAVPSLHIPFASPSSDEPKSSRDIRKETRERKELVKQLLEASKVQ 117          
BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Match: EMLSAP00000010123 (pep:novel supercontig:LSalAtl2s:LSalAtl2s668:164231:167969:-1 gene:EMLSAG00000010123 transcript:EMLSAT00000010123 description:"snap-LSalAtl2s668-processed-gene-1.39")

HSP 1 Score: 113.62 bits (283), Expect = 3.297e-30
Identity = 61/83 (73.49%), Postives = 63/83 (75.90%), Query Frame = 0
Query:   89 DAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSN-DFELLDLNARKKLKSYAVPSLSILVASPSSDEPYPSRDI 170
            DAQYFA  QK LM QRLWIS CRRKDPINIK A+ICDRHF  N   ELLDL  RKKLK  +VPSL IL ASPSSDEP  S DI
Sbjct:    9 DAQYFAFSQKKLMLQRLWISFCRRKDPINIKNAKICDRHFEWNLQAELLDLKCRKKLKRDSVPSLHILFASPSSDEPQSSSDI 91          
BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Match: EMLSAP00000005942 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3212:29478:31623:1 gene:EMLSAG00000005942 transcript:EMLSAT00000005942 description:"maker-LSalAtl2s3212-augustus-gene-0.2")

HSP 1 Score: 58.9214 bits (141), Expect = 5.000e-11
Identity = 46/155 (29.68%), Postives = 67/155 (43.23%), Query Frame = 0
Query:   65 KEREKEKSRGSKRVCAIPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSNDF------ELLDLNARKKLKSYAVPSLSILVASPSSDEPYPSRDIRK---------------ETWERKELVKQLLEGPGNQYSLGNRG 198
            K  E  K R S   CA+  C    D  Y   P+   + Q  W+  C+RKD  N K + IC  HF+ + +      ELL L +RK L+  ++PS ++  +S SS      R  R                E  +  E+V Q++E P  Q S  + G
Sbjct:   57 KPLESTKRRHSSATCAVASCPSPADTSYHNFPKDPALLQN-WVKACKRKDNFNPKTSRICSNHFSQDCYERDLRNELLGLVSRKLLRKGSIPSANLYTSSVSSLTIPSERAGRSSKMEIHQTIEPPLAVEHLDSSEMVPQVVEIPQIQISNVSVG 210          
BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Match: EMLSAP00000008926 (pep:novel supercontig:LSalAtl2s:LSalAtl2s555:158054:228428:1 gene:EMLSAG00000008926 transcript:EMLSAT00000008926 description:"maker-LSalAtl2s555-augustus-gene-1.35")

HSP 1 Score: 57.7658 bits (138), Expect = 2.798e-10
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 0
Query:   77 RVCAIPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSNDF------ELLDLNARKKLKSYAVPSLSILVASPSSDEP 164
            ++CAI  C       Y   P KN++ QR+W ++C+RKD    + A++C  HF    +      ELL+L  RK+L +  VPSL  L+ +P+  +P
Sbjct:  150 KICAIFGCKSPDGVIYHNFP-KNMVRQRIWKNLCKRKDTFKAENAQVCSMHFNDGSYRRDLEHELLNLTPRKRLNTDTVPSL--LLPTPTVPKP 240          
BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Match: EMLSAP00000004012 (pep:novel supercontig:LSalAtl2s:LSalAtl2s214:185584:187441:1 gene:EMLSAG00000004012 transcript:EMLSAT00000004012 description:"maker-LSalAtl2s214-snap-gene-2.56")

HSP 1 Score: 50.0618 bits (118), Expect = 8.753e-8
Identity = 31/91 (34.07%), Postives = 45/91 (49.45%), Query Frame = 0
Query:   67 REKEKSRGSKRVCAIPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSN------DFELLDLNARKKLKSYAVPS 151
            ++ +K R S   CAI  C    +  Y   P K+    R W+  CRR   +N K + IC  HF+ +       F+LL + +RK LK  +VPS
Sbjct:   70 QQSKKRRHSSATCAITSCPSPSNVSYHYFP-KDPTLLRNWVKACRRGYKLNPKTSRICSNHFSQDCYQSDFSFKLLGIVSRKLLKKGSVPS 159          
BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Match: EMLSAP00000007000 (pep:novel supercontig:LSalAtl2s:LSalAtl2s397:1189083:1189928:1 gene:EMLSAG00000007000 transcript:EMLSAT00000007000 description:"augustus-LSalAtl2s397-processed-gene-12.7")

HSP 1 Score: 49.6766 bits (117), Expect = 9.392e-8
Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 0
Query:   71 KSRGSKRVCAIPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSNDFE------LLDLNARKKLKSYAVPSLSILVASPSSDEPYPS---RDIRKETWERKELVKQLLEG 187
            +SR    VCA+  C    +  Y   P K+ + +++W   C RK  +  K   IC+ HF  N++E      LL L  R+KLKS A+P+ +++      ++P P+   R+ R+   +R + V  +L+ 
Sbjct:    2 ESRNKTWVCAVAICGSPNNXVYHDFP-KDCLRRKIWERACHRKGRLG-KTPRICENHFEENNYERDLRNELLGLPLRRKLKSDAIPTKNLV----PGEKPLPTPNEREQREAKKKRMDFVDSILKA 121          
BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Match: EMLSAP00000004491 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2344:81287:81809:1 gene:EMLSAG00000004491 transcript:EMLSAT00000004491 description:"maker-LSalAtl2s2344-augustus-gene-0.11")

HSP 1 Score: 46.2098 bits (108), Expect = 3.188e-7
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 0
Query:   69 KEKSRGSKRVCAIPCCLDRWDAQYFAIPQKNLMHQRLWISVCRRKDPINIKIAEICDRHFTSNDF------ELLDLNARKKLK 145
            K+K R   +VC++  C +  D  Y + P++  + Q +W+  C R+  +N K A IC  HF  +DF      ELL L   K+LK
Sbjct:   34 KKKKRRHHQVCSVANCPNPRDVSYHSFPKEPEL-QIMWVQSCGREK-VNTKTARICGSHFLKDDFLRDLKNELLGLPLVKRLK 114          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008222 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008222 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008222 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 8
Match NameE-valueIdentityDescription
EMLSAP000000082225.285e-144100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s495:18796... [more]
EMLSAP000000029151.967e-4874.36pep:novel supercontig:LSalAtl2s:LSalAtl2s167:41774... [more]
EMLSAP000000101233.297e-3073.49pep:novel supercontig:LSalAtl2s:LSalAtl2s668:16423... [more]
EMLSAP000000059425.000e-1129.68pep:novel supercontig:LSalAtl2s:LSalAtl2s3212:2947... [more]
EMLSAP000000089262.798e-1035.11pep:novel supercontig:LSalAtl2s:LSalAtl2s555:15805... [more]
EMLSAP000000040128.753e-834.07pep:novel supercontig:LSalAtl2s:LSalAtl2s214:18558... [more]
EMLSAP000000070009.392e-829.37pep:novel supercontig:LSalAtl2s:LSalAtl2s397:11890... [more]
EMLSAP000000044913.188e-734.94pep:novel supercontig:LSalAtl2s:LSalAtl2s2344:8128... [more]
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BLAST of EMLSAG00000008222 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008222 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008222 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008222 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s495supercontigLSalAtl2s495:187961..189131 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s495-processed-gene-2.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008222 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008222EMLSAT00000008222-704069Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s495:187961..189131+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008222-690988 ID=EMLSAG00000008222-690988|Name=EMLSAG00000008222|organism=Lepeophtheirus salmonis|type=gene|length=1171bp|location=Sequence derived from alignment at LSalAtl2s495:187961..189131+ (Lepeophtheirus salmonis)
ATGGGGCCACGACAATATTTCAAGGAAAAACCTCATTTGAGAATTGATCC CATAATAAAAGTCCATATTTCTTGGTCTACACCAGCTGGAAAAGATAGAA AAGAAGAGAGAGAAAAAGACAGAGATAGAAACAAAAAGAGAGAAAAAGAC AGAGATAGAAACAAAGAGAGAGAAAAAGACAGAGATAGAAACAAAGAGAG AGAAAAAGAAAAGGTATATTATACAATTTGTAATAACATAGTCTCAACCT GTATAAATAAATTATTTCAAGCTCCATGGACGCAACATGACTTGTTTTAT AACCGTAATGCGTGAGGATGTTGCGTCTTGATGAAGGTTGCCGAGGTACC AACTATTTATTAAAAGGAGGGATCCATGACGAACGGGAGAAATGGGAAGA AGGAAAGGCCTGGAGGAATAAGACAAGGATTGTCTATAGGACCATCTATA TTCTTATTAATACAAAAACCTACTCTGTTAAAAAAACATAGATTACAAAA CTATTTATACTTATAAAAAGGTAAAAGCAGTACTTTACAAATATATATAC ATACAAGAAAATACAATAAAAGAGAATAAGGCGGAAGGAGACACAAATAC ATTACAGAGGAATTCCAAAAAACGTACATTCAAGGGAGTCCTTGGTGCAA GGGTTACTATATATTAAGGTGAGGCAACAAAGATCTTCGAACCCAGTCTG GTGGGTGTTAGCTGACTAAGCTGACTTAGTGACGTCGCCGTTACAGCAGT TAACTTAATTAAATGTTAATCAAAAATGGTATAGTCTCGAGGTTCAAAGC GTGTTTGTGCCATACCCTGCTGTCTCGATCGATGGGATGCCCAGTATTTT GCAATTCCTCAGAAAAATTTGATGCACCAGCGTCTTTGGATCTCAGTCTG CAGGAGGAAAGATCCGATTAATATTAAGATTGCTGAGATTTGTGATAGGC ATTTTACATCTAATGATTTTGAGCTTCTTGACTTAAATGCCAGGAAGAAA TTAAAAAGTTATGCAGTCCCCTCACTCAGTATTCTCGTTGCTTCTCCCAG TTCAGATGAACCCTATCCCTCTAGAGATATTCGTAAGGAAACTTGGGAAA GGAAAGAGCTTGTGAAACAATTATTGGAAGGCCCAGGAAACCAGTATAGT CTCGGAAACAGAGGCTGRTAA
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