EMLSAG00000008282, EMLSAG00000008282-691048 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008282
Unique NameEMLSAG00000008282-691048
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008282 vs. C. finmarchicus
Match: gi|592800691|gb|GAXK01153877.1| (TSA: Calanus finmarchicus comp6986080_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 9.815e+0
Identity = 13/37 (35.14%), Postives = 23/37 (62.16%), Query Frame = 0 
Query:    1 MKIGRVMAALKSSKKLILIIVCLLYLTVAHSASISSP 37
            + +G V+  L S +++I  ++CLL+L  A   + SSP
Sbjct:   50 IPVGVVLPMLASVRRIICFVICLLWLGYAFLEAGSSP 160
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BLAST of EMLSAG00000008282 vs. L. salmonis peptides
Match: EMLSAP00000008282 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4:998714:999427:-1 gene:EMLSAG00000008282 transcript:EMLSAT00000008282 description:"maker-LSalAtl2s4-snap-gene-10.3")

HSP 1 Score: 445.662 bits (1145), Expect = 2.060e-160
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 
Query:    1 MKIGRVMAALKSSKKLILIIVCLLYLTVAHSASISSPPCGCIEKDRLETLESVSSMVLGSSHSDDQTSKCNLFCSTKSGTHFVNLEQGICHCFSTSQLPTFDCDEILKSSNRNNSKQAVIPVYCPLAAKMKSGTTKSSDGKVDVQEEETQFSISKGIASAAIVLVTLSVVVLILFGLKTCYDNKKTVKLQGSEKCPKKNSSTWNFDEHKIKETRSENNI 219
            MKIGRVMAALKSSKKLILIIVCLLYLTVAHSASISSPPCGCIEKDRLETLESVSSMVLGSSHSDDQTSKCNLFCSTKSGTHFVNLEQGICHCFSTSQLPTFDCDEILKSSNRNNSKQAVIPVYCPLAAKMKSGTTKSSDGKVDVQEEETQFSISKGIASAAIVLVTLSVVVLILFGLKTCYDNKKTVKLQGSEKCPKKNSSTWNFDEHKIKETRSENNI
Sbjct:    1 MKIGRVMAALKSSKKLILIIVCLLYLTVAHSASISSPPCGCIEKDRLETLESVSSMVLGSSHSDDQTSKCNLFCSTKSGTHFVNLEQGICHCFSTSQLPTFDCDEILKSSNRNNSKQAVIPVYCPLAAKMKSGTTKSSDGKVDVQEEETQFSISKGIASAAIVLVTLSVVVLILFGLKTCYDNKKTVKLQGSEKCPKKNSSTWNFDEHKIKETRSENNI 219
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008282 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008282 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592800691|gb|GAXK01153877.1|9.815e+035.14TSA: Calanus finmarchicus comp6986080_c0_seq1 tran... [more]
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BLAST of EMLSAG00000008282 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000082822.060e-160100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s4:998714:... [more]
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BLAST of EMLSAG00000008282 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008282 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008282 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008282 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s4supercontigLSalAtl2s4:998714..999427 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s4-snap-gene-10.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008282 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008282EMLSAT00000008282-704129Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s4:998714..999427-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008282-691048 ID=EMLSAG00000008282-691048|Name=EMLSAG00000008282|organism=Lepeophtheirus salmonis|type=gene|length=714bp|location=Sequence derived from alignment at LSalAtl2s4:998714..999427- (Lepeophtheirus salmonis)
ATGAAAATTGGAAGGGTCATGGCAGCTTTAAAATCCTCAAAGAAGTTAAT
ACTAATAATAGTTTGTTTACTTTATTTGACAGTAGCGCATTCAGCATCCA
TTAGCTCCCCTCCATGTGGATGCATTGAAAAGGACAGACTTGAAACCTTA
GAGTCCGTTTCCTCTATGGTTCTAGGATCCTCTCATTCAGATGATCAAAC
ATCTAAATGTAATCTTTTTTGTAGTACAAAATCTGGCACGCATTTTGTGA
ATTTGGAACAAGGGATTTGTCATTGCTTTAGTACATCCCAGCTTCCTACT
TTTGATTGTGATGAAATACTTAAAAGTTCTAATAGAAACAACTCCAAACA
AGCTGTGATCCCTGTTTATTGTGTAAGCTCTTCACTTATCCAACATTTAA
AATTATCCTCTTCTTCATCTAATAAGCCTTTGGCTGCTAAAATGAAGTCT
GGAACGACAAAATCCTCGGATGGTAAAGTGGATGTGCAAGAGGAAGAAAC
ACAATTTTCAATCAGCAAAGGGATCGCTTCTGCCGCGATTGTTCTTGTTA
CTTTGTCCGTAGTTGTATTGATTCTTTTTGGACTAAAGACTTGCTATGAT
AACAAAAAGACAGTGAAGCTTCAGGGGAGTGAAAAATGTCCCAAGAAAAA
TTCTTCAACATGGAATTTTGACGAACATAAAATTAAAGAAACAAGGTCTG
AAAACAATATCTGA
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