EMLSAG00000008602, EMLSAG00000008602-691368 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008602
Unique NameEMLSAG00000008602-691368
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008602 vs. GO
Match: - (symbol:5-HT2A "5-hydroxytryptamine (serotonin) receptor 2A" species:7227 "Drosophila melanogaster" [GO:0005886 "plasma membrane" evidence=ISS;NAS;IDA] [GO:0007377 "germ-band extension" evidence=IMP] [GO:0007210 "serotonin receptor signaling pathway" evidence=ISS;IDA;IMP;NAS;TAS] [GO:0004993 "serotonin receptor activity" evidence=ISS;IDA;NAS;TAS] [GO:0016021 "integral component of membrane" evidence=IEA;ISS] [GO:0001587 "Gq/11-coupled serotonin receptor activity" evidence=NAS] [GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS] [GO:2000253 "positive regulation of feeding behavior" evidence=IMP] InterPro:IPR000276 InterPro:IPR017452 Pfam:PF00001 PRINTS:PR00237 PROSITE:PS50262 EMBL:AE014297 GO:GO:0016021 GO:GO:0005886 GeneTree:ENSGT00740000114976 KO:K04157 GO:GO:0001587 GO:GO:2000253 GO:GO:0007377 UniGene:Dm.9854 GeneID:40575 KEGG:dme:Dmel_CG1056 CTD:40575 FlyBase:FBgn0087012 GenomeRNAi:40575 NextBio:819461 RefSeq:NP_730859.1 ProteinModelPortal:Q8IPN2 SMR:Q8IPN2 PRIDE:Q8IPN2 EnsemblMetazoa:FBtr0078855 UCSC:CG1056-RB InParanoid:Q8IPN2 OMA:HPESELF PhylomeDB:Q8IPN2 Bgee:Q8IPN2 Uniprot:Q8IPN2)

HSP 1 Score: 45.8246 bits (107), Expect = 3.041e-5
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:   27 LPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLK 68
            L ++ + INPIIY I ++TFR++ I+LLK NC   ++ RPL+
Sbjct:  835 LGYVSSTINPIIYTIFNRTFRAAFIRLLKCNC--KRSGRPLR 874
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592838153|gb|GAXK01119391.1| (TSA: Calanus finmarchicus comp2498830_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 70.8626 bits (172), Expect = 2.485e-14
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 0 
Query:    1 MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNEEGEL 75
            ME ++K   +  F  TVYWI+VV+FL PFIHA +NP+IY+ MSK FR+S+ K++KE C     C+ ++N  +G +
Sbjct:   52 METLLKMGILQ-FTATVYWIKVVLFLFPFIHAIVNPLIYVAMSKLFRNSLFKMMKELC-----CK-MENQMDGTM 255
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592945611|gb|GAXK01012942.1| (TSA: Calanus finmarchicus comp1765049_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 3.316e-3
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 0 
Query:   11 NLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSII 51
            N+  P  Y+ R+   LLP IHA +NPIIY +MS + R S++
Sbjct:  626 NVSQPFYYFSRIAK-LLPVIHAMLNPIIYSLMSGSVRRSVL 745
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592903955|gb|GAXK01054420.1| (TSA: Calanus finmarchicus comp2909818_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 7.533e-3
Identity = 19/46 (41.30%), Postives = 24/46 (52.17%), Query Frame = 0 
Query:   13 FYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENC 58
            F  T Y   ++   LP +HA INP IY +MS  FR  + K   E C
Sbjct:  247 FTQTFYIFSILAQHLPAVHATINPAIYWMMSANFRKLVSKWRDEIC 384
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592896351|gb|GAXK01062024.1| (TSA: Calanus finmarchicus comp4884471_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.295e-2
Identity = 25/67 (37.31%), Postives = 34/67 (50.75%), Query Frame = 0 
Query:   14 YPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNEEGELQELDG 80
            +P+   I ++ F L   ++ INPIIY IMS  FR ++ K+      F    RPL     G LQ L G
Sbjct:  232 HPSTQHIFLIFFWLAMANSAINPIIYFIMSARFRIALRKV------FPFCSRPLL----GALQTLLG 402
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592862464|gb|GAXK01095098.1| (TSA: Calanus finmarchicus comp978013_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 5.718e-2
Identity = 13/40 (32.50%), Postives = 26/40 (65.00%), Query Frame = 0 
Query:   15 PTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLL 54
            P+++ + +  ++L ++   INPIIY++MS  +R +   LL
Sbjct:  333 PSLHLVSIASYILIYLTTCINPIIYVLMSSEYRQAYCNLL 452
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592903680|gb|GAXK01054695.1| (TSA: Calanus finmarchicus comp1052519_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 6.481e-2
Identity = 25/83 (30.12%), Postives = 39/83 (46.99%), Query Frame = 0 
Query:   16 TVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNEEGEL-----QELDGINPLFQSKCSVHK 93
            T   I+    LL + ++ +NP+IY  MSK FR S +  +   C   K+    K  E G +     +EL   N + + KC  H+
Sbjct:   68 TTKNIKTAFSLLSYSNSCLNPVIYGFMSKNFRKSFLSSI---CLKRKSGNA*KGREGGVMY*DW*KEL---NEVMKEKCE*HR 298
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592903682|gb|GAXK01054693.1| (TSA: Calanus finmarchicus comp1052519_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 6.606e-2
Identity = 25/83 (30.12%), Postives = 39/83 (46.99%), Query Frame = 0 
Query:   16 TVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNEEGEL-----QELDGINPLFQSKCSVHK 93
            T   I+    LL + ++ +NP+IY  MSK FR S +  +   C   K+    K  E G +     +EL   N + + KC  H+
Sbjct:   68 TTKNIKTAFSLLSYSNSCLNPVIYGFMSKNFRKSFLSSI---CLKRKSGNA*KGREGGVMY*DW*KEL---NEVMKEKCE*HR 298
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592928682|gb|GAXK01029863.1| (TSA: Calanus finmarchicus comp933788_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 8.028e-2
Identity = 20/62 (32.26%), Postives = 31/62 (50.00%), Query Frame = 0 
Query:   20 IRVVIFLLPFIHAGI--NPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNEEGELQELD 79
            + + +F L F  + I  NPIIY++M+K F+ + I  L  +  F      +  N  G L E D
Sbjct:  584 LYMTVFPLQFAKSAILWNPIIYVVMNKAFQKAFITWLPFD--FGNTLGLMLGNSRGPLSETD 763
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592946142|gb|GAXK01012411.1| (TSA: Calanus finmarchicus comp864934_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 9.664e-2
Identity = 18/49 (36.73%), Postives = 29/49 (59.18%), Query Frame = 0 
Query:   23 VIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNE 71
            V F L + ++ INP+IY + S+ FR++  ++L   C F   C+  K NE
Sbjct: 1930 VFFWLGYCNSAINPVIYGLFSREFRAAFKRIL---CKF--FCKGSK*NE 2061
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Match: gi|592928883|gb|GAXK01029662.1| (TSA: Calanus finmarchicus comp1654149_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 1.019e-1
Identity = 13/39 (33.33%), Postives = 23/39 (58.97%), Query Frame = 0 
Query:   19 WIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKEN 57
            W+  +   L + ++ +NPIIY ++ + FR + I LL  N
Sbjct: 1408 WVSSLTLWLGYANSMLNPIIYGVLHRDFRKTFIDLLSCN 1524
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BLAST of EMLSAG00000008602 vs. L. salmonis peptides
Match: EMLSAP00000008602 (pep:novel supercontig:LSalAtl2s:LSalAtl2s52:985585:985932:1 gene:EMLSAG00000008602 transcript:EMLSAT00000008602 description:"augustus_masked-LSalAtl2s52-processed-gene-9.0")

HSP 1 Score: 235.728 bits (600), Expect = 6.005e-81
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:    1 MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNEEGELQELDGINPLFQSKCSVHKINHDDHDESNFNLKDKKTISSL 115
            MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNEEGELQELDGINPLFQSKCSVHKINHDDHDESNFNLKDKKTISSL
Sbjct:    1 MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACRPLKNNEEGELQELDGINPLFQSKCSVHKINHDDHDESNFNLKDKKTISSL 115
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BLAST of EMLSAG00000008602 vs. L. salmonis peptides
Match: EMLSAP00000012081 (pep:novel supercontig:LSalAtl2s:LSalAtl2s863:198955:217784:-1 gene:EMLSAG00000012081 transcript:EMLSAT00000012081 description:"maker-LSalAtl2s863-augustus-gene-1.25")

HSP 1 Score: 110.923 bits (276), Expect = 6.800e-30
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0 
Query:    1 MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENCSFSKACR----PLKNNEEGELQELDG 80
            MEI+IKSKT NLFYP++YWIRV++FLLPF+HA +NPIIYIIMSKTFRSSI+K+ K+ CS  + C      L  +EE EL+   G
Sbjct:  345 MEIIIKSKTQNLFYPSIYWIRVLLFLLPFVHACVNPIIYIIMSKTFRSSIVKISKQKCSLKRMCHVSITALPQDEEEELELCTG 428
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BLAST of EMLSAG00000008602 vs. Select Arthropod Genomes
Match: gb|EEC10603.1| (G-protein coupled receptor, putative [Ixodes scapularis])

HSP 1 Score: 60.077 bits (144), Expect = 1.496e-11
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 0 
Query:    1 MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENC 58
            MEIV+K   +N+F   VY +RV+ +LLPF+H+ +NPI+Y  MS  FR  +++  +  C
Sbjct:   68 MEIVVKC-CLNVFNHGVYAVRVLFYLLPFVHSCLNPIVYCFMSSKFRRRMLRCCQRTC 124
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BLAST of EMLSAG00000008602 vs. Select Arthropod Genomes
Match: EFX75387.1 (hypothetical protein DAPPUDRAFT_107861 [Daphnia pulex])

HSP 1 Score: 53.9138 bits (128), Expect = 4.723e-9
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0 
Query:    1 MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENC 58
            MEI IK   +  F   +Y++RVVI +LP++H+ +NP IY +MSK FR S+ + L   C
Sbjct:   19 MEISIKVG-LESFSQGIYFVRVVINMLPYVHSCLNPFIYSLMSKNFRRSMWRRLHSCC 75
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BLAST of EMLSAG00000008602 vs. nr
Match: gi|241627156|ref|XP_002407991.1| (G-protein coupled receptor, putative [Ixodes scapularis] >gi|215501109|gb|EEC10603.1| G-protein coupled receptor, putative [Ixodes scapularis])

HSP 1 Score: 60.077 bits (144), Expect = 7.321e-9
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 0 
Query:    1 MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKENC 58
            MEIV+K   +N+F   VY +RV+ +LLPF+H+ +NPI+Y  MS  FR  +++  +  C
Sbjct:   68 MEIVVKC-CLNVFNHGVYAVRVLFYLLPFVHSCLNPIVYCFMSSKFRRRMLRCCQRTC 124
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BLAST of EMLSAG00000008602 vs. nr
Match: gi|646715529|gb|KDR19106.1| (Cholecystokinin receptor [Zootermopsis nevadensis])

HSP 1 Score: 56.6102 bits (135), Expect = 2.655e-7
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0 
Query:    1 MEIVIKSKTMNLFYPTVYWIRVVIFLLPFIHAGINPIIYIIMSKTFRSSIIKLLKE 56
            ME++IK   ++ F PT+Y +RV   LLPFIHA +NP IY  MSK FR S+ + L++
Sbjct:   98 MEVIIKFN-LHSFTPTMYTLRVTFNLLPFIHACMNPFIYSFMSKNFRRSLQRQLEK 152
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008602 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-3.041e-547.62symbol:5-HT2A "5-hydroxytryptamine (serotonin) rec... [more]
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BLAST of EMLSAG00000008602 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592838153|gb|GAXK01119391.1|2.485e-1446.67TSA: Calanus finmarchicus comp2498830_c0_seq1 tran... [more]
gi|592945611|gb|GAXK01012942.1|3.316e-346.34TSA: Calanus finmarchicus comp1765049_c0_seq1 tran... [more]
gi|592903955|gb|GAXK01054420.1|7.533e-341.30TSA: Calanus finmarchicus comp2909818_c0_seq1 tran... [more]
gi|592896351|gb|GAXK01062024.1|1.295e-237.31TSA: Calanus finmarchicus comp4884471_c0_seq1 tran... [more]
gi|592862464|gb|GAXK01095098.1|5.718e-232.50TSA: Calanus finmarchicus comp978013_c0_seq1 trans... [more]
gi|592903680|gb|GAXK01054695.1|6.481e-230.12TSA: Calanus finmarchicus comp1052519_c0_seq3 tran... [more]
gi|592903682|gb|GAXK01054693.1|6.606e-230.12TSA: Calanus finmarchicus comp1052519_c0_seq1 tran... [more]
gi|592928682|gb|GAXK01029863.1|8.028e-232.26TSA: Calanus finmarchicus comp933788_c0_seq1 trans... [more]
gi|592946142|gb|GAXK01012411.1|9.664e-236.73TSA: Calanus finmarchicus comp864934_c0_seq2 trans... [more]
gi|592928883|gb|GAXK01029662.1|1.019e-133.33TSA: Calanus finmarchicus comp1654149_c0_seq1 tran... [more]

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BLAST of EMLSAG00000008602 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000086026.005e-81100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s52:985585... [more]
EMLSAP000000120816.800e-3061.90pep:novel supercontig:LSalAtl2s:LSalAtl2s863:19895... [more]
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BLAST of EMLSAG00000008602 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008602 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
gb|EEC10603.1|1.496e-1143.10G-protein coupled receptor, putative [Ixodes scapu... [more]
EFX75387.14.723e-944.83hypothetical protein DAPPUDRAFT_107861 [Daphnia pu... [more]
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BLAST of EMLSAG00000008602 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|241627156|ref|XP_002407991.1|7.321e-943.10G-protein coupled receptor, putative [Ixodes scapu... [more]
gi|646715529|gb|KDR19106.1|2.655e-750.00Cholecystokinin receptor [Zootermopsis nevadensis][more]
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BLAST of EMLSAG00000008602 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s52supercontigLSalAtl2s52:985585..985932 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s52-processed-gene-9.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008602 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008602EMLSAT00000008602-704449Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s52:985585..985932+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008602-691368 ID=EMLSAG00000008602-691368|Name=EMLSAG00000008602|organism=Lepeophtheirus salmonis|type=gene|length=348bp|location=Sequence derived from alignment at LSalAtl2s52:985585..985932+ (Lepeophtheirus salmonis)
ATGGAAATCGTGATAAAAAGTAAGACAATGAATCTTTTTTATCCAACTGT
TTACTGGATACGCGTCGTTATCTTCCTTCTACCTTTTATTCACGCCGGAA
TCAATCCCATCATTTACATCATAATGAGTAAAACTTTTCGAAGCTCTATC
ATAAAACTTTTAAAAGAAAACTGCAGTTTTTCAAAGGCCTGTCGTCCTTT
GAAAAACAATGAAGAGGGAGAACTACAGGAGTTGGATGGCATAAATCCTC
TCTTTCAATCAAAATGCTCCGTTCATAAAATAAATCATGATGACCACGAT
GAATCAAATTTTAATTTGAAGGATAAAAAGACCATTAGTTCGCTATAA
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