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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000008780 vs. L. salmonis peptides
Match: EMLSAP00000008780 (pep:novel supercontig:LSalAtl2s:LSalAtl2s545:257364:262051:1 gene:EMLSAG00000008780 transcript:EMLSAT00000008780 description:"maker-LSalAtl2s545-augustus-gene-2.22") HSP 1 Score: 374.4 bits (960), Expect = 3.084e-133 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MESWQKRLRLLSPYTPTXNPTTLKWMAKRTINGSEELTELKNNEKIKIPKICKEIGEHKVNCSLTFKALATEDIENVSYELQAENKFGQEIYSFKILTPDSTTLPPQXTTSSSSTSETTTSTGKSSTSSSSTTPGGSSSTATPTPEGGGTSSYVIPLVIFIVIIVVLIGGMIAYKRYSAKRQTAPLSMQ 189
MESWQKRLRLLSPYTPTXNPTTLKWMAKRTINGSEELTELKNNEKIKIPKICKEIGEHKVNCSLTFKALATEDIENVSYELQAENKFGQEIYSFKILTPDSTTLPPQXTTSSSSTSETTTSTGKSSTSSSSTTPGGSSSTATPTPEGGGTSSYVIPLVIFIVIIVVLIGGMIAYKRYSAKRQTAPLSMQ
Sbjct: 1 MESWQKRLRLLSPYTPTXNPTTLKWMAKRTINGSEELTELKNNEKIKIPKICKEIGEHKVNCSLTFKALATEDIENVSYELQAENKFGQEIYSFKILTPDSTTLPPQXTTSSSSTSETTTSTGKSSTSSSSTTPGGSSSTATPTPEGGGTSSYVIPLVIFIVIIVVLIGGMIAYKRYSAKRQTAPLSMQ 189
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008780 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of EMLSAG00000008780 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EMLSAP00000008780 | 3.084e-133 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s545:25736... | [more] |
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s545 | supercontig | LSalAtl2s545:257364..262051 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Description | maker-LSalAtl2s545-augustus-gene-2.22 |
| Biotype | protein_coding |
| Evidence | IEA |
| Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s545:257364..262051+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000008780-691546 ID=EMLSAG00000008780-691546|Name=EMLSAG00000008780|organism=Lepeophtheirus salmonis|type=gene|length=4688bp|location=Sequence derived from alignment at LSalAtl2s545:257364..262051+ (Lepeophtheirus salmonis)
CACATTTACAGTTGCCTGGCCTGTGCTTTCGCCTTGTTCGAAGAAAAAAT
ATAAAAAATGGCAAATTTTATCTTTGTTCGTCTCCATCATTGAGGCCCAC
TCCATCAATGGGTATTCAAATAATCAGAAAACTGTTTTTTTAGTACGCTA
CTTTATTTTTTGAGCGTAAACTTATCACACTTGTACAACGCAAGATAAAC
ATTACTAAATCCACCTTATTACTATCCCTATTATTTGAATTATTTGTATC
CAATCAAATCACATAATTTGCATAGATTTGATTGGTTAAAATCATAGAGA
AAGAAATATATTGGCCATTGACTTCATATGTTTTTGTTAGTTTTGTATAG
AACTCCTTTTGACTCTCTATTCTTTTTTCTAATTTTACAAAGGAAGTTCC
CTAAGCATTTTGACGAATGTATTTTTGAAATTTAAAATGTACAGTAGTGC
CCCACTGAGACTTTATTTCACTATTTCGCATTTCTACAGTTTTTCATTTC
AAGACCCTTTTTGTCCGGTACATAACAAAATCCACCTTTTACATGCGAAA
AGAATAAAATGTTGGTTGGTCTCTAGGATTCTTGATCCAAAGAGCACTCA
CTGTATTTCCTTTACTAAATTAATTGGACTTTTTTGGCATGTAGTTTCAC
TCCTTTTTATAATTCAATATTTTTGTCATAACAAAATGTAATTTTATAGG
GAAACCTGTTGGTATATCCAACCTTACGACCTCGGGAAATCTCAATATTA
CTGCTGAGAATTCTTCAGTGATTGAAAGTTCAAATGGAGAGAAATCCCTA
TCTCATAAAATCCTTGTTAATGTCACACCTGAGGATCACGGTGCATCTAT
CAAATGTGAGGGTAAACAGTATGACAAATCTGATCCTCCTACACAACTAT
TTGAAACTATGAGCATTGGACCCCAAAAATTGGTGGTGGTCTTTCCTCCT
CAACCCTTGGACCCATTGAGTTTTAATGGAGAGTTGGCAGAAGAGGTTAA
GGTTATTATCCCCATACACTCCAACCNCGAATCCAACGACTCTTAAATGG
ATGGCAAAAAGAACTATAAATGGATCGGAGGAATTGACTGAATTAAAGAA
TAATGAGAAAATGTAAGTTGTATTTTAATTCACCTAACCACCTTACTCCT
CTATTCCATTGATACTTTTAGAAAAATCCCAAAAATTTGTAAAGAAATTG
GAGAGCATAAGGTAAACTGCAGCCTTACGTTCAAGGCACTAGCAACAGAG
GACATTGAGAACGTCTCCTACGAACTCCAAGCGGAAAATAAATTTGGTCA
GGAGATCTATTCTTTCAAGATTCTGACACCAGATTCCACAACCCTTCCAC
CCCAARCCACCACAAGCTCAAGTTCAACATCAGAAACCACAACATCTACA
GGGAAATCATCTACGAGTTCATCATCAACCACACCTGGAGGATCCTCCTC
CACTGCGACTCCTACTCCGGAAGGTGGAGGGACTTCTTCTTATGTCATTC
CTCTAGTCATTTTTATAGTCATCATTGTCGTTCTCATTGGAGGAATGATT
GCCTATAAGCGATATTCTGCAAAGAGACAAACAGCACCCTTATCCATGCA
GTAAAATATGTAAGCGGTCCCTCTCGAAAAAAGAATAAGGATAGGTATCG
AAAGAAAGGACACGGCTCCGAAAGGAATACTACAATTTAAAGACATTCCC
CTAGATCCCTTAGAGTTTTATTCAATCTTGCTTATTATATTAGATTCATT
TAGATTTTGTTTATTACATTTATTTATAATATATACATATACATTTATAT
AATCTGTACTTTGCGAAAACCCCAATTCGGAAAAAATTAGTAATCAAAGC
ATTCCACTAAATTATTTAGTATCCATGTTGAAGTAATTAAAATCAATTGT
CATTCATTTATACATAAAAATACAAAATATAATTGTTTTTTCTACATAAT
ACTTATATATAAAACTTTATACAAACATATCTATATTACAAATAACACTC
CTAAAGTGGGTTCACAACTTGATGCATTGCACTTTTTTAAAGAGATTTCC
CCCGTCATTTTATGTATCACACAACCTTTCCTCTGAAAAGTAACGGCAAA
AAAAGACTCAAATTCAGTTGATAGCCAATTATTATTTAATAATTGCTGGG
GATTGCTCACAGCTATAAAAATAAGTAATTTTAATTCAACCAATCAACGT
TCAGAACACTAATTAGGATAAAAAAGGGAGAAACATACAATGTAAATTTT
TGTGTTAGTCTGGTATCGCCGTGAATTAGAGAAGGAACTTTTAATACAGT
CTCTCCTCTTTGGATTTATCTTCTCCGTCACGTAACAAAAAAGGAAAAAA
CAAATGCAAATAAACATAGCAACCGTTGCTACCCCGATTGTATCACTCAA
CCTTTCCTCCAAGAAAGAAGCAGAAAAAGTTGGTATTTACGAAATGCTTA
ATTAAATATATACTTATTATTCAATTCTTTGAGAATTTTTCACAGCTTCA
TAAGAACGAGTTCTAATTCAACGTTCAGAACACTGATTAGGAGAAAAGAA
GCGGAAATATTGACAGCTGATAGCAAAATCCGCTATATATTTTTGTATTA
GTGAGGTAACGCCGTGAGCAGAATGACTTATTATTCTTTCAAAGTGAATT
TACTCTTTATGAAAATTACAAAAGTTATGCTCTCACAAAATTATGTTATG
AAGAAAAAAATATATAAGAAATGCCCAAACCCTGTGTTCCATGTAGAGAT
TTCCAATCATCAAAACTTTATACTTTTACCGTTGGAATATTCGGAGCATT
TAAATTAAGAATCATGAATGGTATGGCTTAATGATTTGCGGCATAGTATT
ATATTAAGTGATTATGCTCCTATGTTTACCTTCGAATTTTCTTTCTACTG
TATGGCCTTACAGTTAAACAAAAAATTGAAAATGTGAGGCTGTGTTAATA
GTTCTAGAGCCATTTGTCATGAAGAACCCTTAAGAAAAATAATAAGGAGA
AATCTTTAAGCAAGAGCAACGCGTCAAGTTATGAACCCACAGTCACATAA
TACTTACACAGATTCAAATCCTATAATTTAATTAAAATATATATATAAAG
AAACGTCTGTAATGATAAATGCCTCATAAAAAAGGAGGCAAGATTCGTTG
AGAATAAATTTCACGAAGATTCCGACGCTCCTCTCTTATTTGCTGAAGAG
TAAAAATGTCCCTGAGAGTACTTGCATTGATGGAATATGACGAATGCAAT
AATCCCTACAATGACAATAAACAAAATCCCACCTAAAATACCAAATATCA
AAGACCAGGGCGTTTCTCCTAAATTCTCACTTGTAGAATCCTCATCAACA
TTTTGTTCTGATTTATGTGCCAAAGAGGAGTTGAAGGATTTAAGGTGCGT
GTCATGTCTTAATATTCCTTCACCGTTATCAACTGTCAGTATGTATTCAC
ACACCGTGATATTCTCCAAATCAATTATCAAAGTGATCAAATACTTGTGT
TCTCCAGTCACTTTGACTTCTGTTTCGGTTTTGTGATAGACAAAGGTATT
GTTTTGATCATCAAACAACTCCCAATCAATGGACTCTGCCTCTGGGTTTG
CGATAAACTCAAACATAAAGCGAATTTCGTGGATATTTACCATCTGAGGA
GGATATAGTACTTGTATTATAAGAGAATCACTGGTTTGATTGCTGTAAAT
GAGTCTATCATCGTCTGTGACTTGATTTACTCCACATAGAAGCACATCTC
CATCATTTTGCAGACCCATTTGAGAGAGATGGAAGAGTCCTTCGTCATTT
CCTTCTATTGGGATTCCATTTCTATAGAGTTCAAAGTTTGAAATACTGGG
TATACCATTCTCGGAGGTACAAATGATGTCTGTGTCTATCGTTTGAGTTG
AATTTGATACATGAAGTACACCACTTTCAGAGTGGGTGATTGTAATACTT
GCAGGATGGGCAACTTGGATTGAAAATTCTTTGCTCATCATATCCATCCT
TCCCGTCGAAATATCATCGAATGATCCGAGCAAACACTTTTAGATAAAGA
TATCATTCATTTCTCATTAGATATGTACAGGTATTTAATGAAAAAAAATT
ATATAAAAAAATATGAGCATTACATGAAGGTGTAATTTATGAAGACATGA
AAAGAGATGAATGATATCCTTAAGTCCTATGGATCTTTGCAGCATAACTA
ACCGTATATTCTCCTTCATGAACTTCAACTTTCGGTAATTCTATTTGAAG
AATACACTTTCTTTCCGTTTCAATGTGCAGAGTGATTCCCTCCGGGAAAT
CTGTACAGGCATACGAACTCGATCCCGATGAGCCAACACATTTCTCACCA
TTATAAGACCAGATACACAAGTCAAAAGGACTATCACTCTCACAAAATAA
TTGATTGGGAGGCTCTCCGGGTAACAGGAACAATGCAGGATCAGAGGAGG
CAATGATTTGAACTGAGCAACTACCTGAGGCTATGATGAATAGGAGGAGG
AGAAGTCCAAACGAACAAGAGACACTCCAGATATCTGATCTCTTTGGTAT
CATTATAAAGTGTTTGTTGACTATGTAATAGGTATGTGTATTTTTTGACA
CTCAAACTACCTCTGCCGGAAATCCAGTTCGAACCAAGAGGGAAATCAAA
CAAATTTAACGGCTTACATACATAGATAAGTGAGACAA back to top
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