EMLSAG00000009031, EMLSAG00000009031-691797 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009031
Unique NameEMLSAG00000009031-691797
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009031 vs. C. finmarchicus
Match: gi|592807352|gb|GAXK01147216.1| (TSA: Calanus finmarchicus comp43384_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.485e-2
Identity = 28/76 (36.84%), Postives = 37/76 (48.68%), Query Frame = 0 
Query:    1 MRSHFSSHFDTHFRSHAEATGDQGFA---FPDFFN------DDSDIFSLNEDSMFQGVNS-RTMKKMEVVLVVVIQ 66
            ++ HF++HF +H  +H  A G   FA   F +FFN      DDSD+F  + D MF   N  RT  K       V Q
Sbjct:  801 LKGHFANHFGSHKMNHESAGGHFDFADVKFEEFFNSPFGAHDDSDMFGRDMD-MFGSSNKVRTETKNGQKCKTVTQ 1025
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BLAST of EMLSAG00000009031 vs. L. salmonis peptides
Match: EMLSAP00000009031 (pep:novel supercontig:LSalAtl2s:LSalAtl2s566:264621:264896:1 gene:EMLSAG00000009031 transcript:EMLSAT00000009031 description:"snap_masked-LSalAtl2s566-processed-gene-2.24")

HSP 1 Score: 151.369 bits (381), Expect = 4.717e-49
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 
Query:    1 MRSHFSSHFDTHFRSHAEATGDQGFAFPDFFNDDSDIFSLNEDSMFQGVNSRTMKKMEVVLVVVIQLRNRLEIL 74
            MRSHFSSHFDTHFRSHAEATGDQGFAFPDFFNDDSDIFSLNEDSMFQGVNSRTMKKMEVVLVVVIQLRNRLEIL
Sbjct:    1 MRSHFSSHFDTHFRSHAEATGDQGFAFPDFFNDDSDIFSLNEDSMFQGVNSRTMKKMEVVLVVVIQLRNRLEIL 74
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BLAST of EMLSAG00000009031 vs. nr
Match: gi|225717556|gb|ACO14624.1| (DnaJ homolog subfamily B member 9 [Caligus clemensi])

HSP 1 Score: 62.3882 bits (150), Expect = 3.630e-10
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0 
Query:    1 MRSHFSSHFDTHFRSHAEATGDQGFAFPDFFNDDSDIFSLNEDSMFQGVNSRTMK--KMEVVLVVVIQLRNRL 71
            M+SHFSSHFD HFRSHAEATG  GF F DF NDD D+F L  + +F   +   MK  + E    V  ++ N +
Sbjct:  122 MKSHFSSHFDNHFRSHAEATG-GGFDFEDFLNDD-DMFGLRGEDLFAKGSGPAMKNSRSESCHTVTQRVGNTI 192
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009031 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009031 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592807352|gb|GAXK01147216.1|3.485e-236.84TSA: Calanus finmarchicus comp43384_c1_seq1 transc... [more]
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BLAST of EMLSAG00000009031 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000090314.717e-49100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s566:26462... [more]
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BLAST of EMLSAG00000009031 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009031 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009031 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|225717556|gb|ACO14624.1|3.630e-1049.32DnaJ homolog subfamily B member 9 [Caligus clemens... [more]
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BLAST of EMLSAG00000009031 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s566supercontigLSalAtl2s566:264621..264896 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s566-processed-gene-2.24
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009031 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009031EMLSAT00000009031-704878Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s566:264621..264896+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009031-691797 ID=EMLSAG00000009031-691797|Name=EMLSAG00000009031|organism=Lepeophtheirus salmonis|type=gene|length=276bp|location=Sequence derived from alignment at LSalAtl2s566:264621..264896+ (Lepeophtheirus salmonis)
ATGAGATCTCATTTCTCCTCTCATTTTGACACTCACTTTCGAAGTCACGC
TGAGGCTACCGGAGATCAAGGCTTTGCCTTCCCAGATTTTTTCAATGTAA
GGCGATTTATTTCAATTGTACATCTGATATGACCTTTTTTTATGCAGGAC
GACTCGGATATTTTTAGTCTCAATGAGGATTCCATGTTTCAAGGTGTTAA
TAGCAGAACCATGAAAAAAATGGAGGTAGTTCTAGTAGTTGTCATACAGT
TACGCAACAGGTTGGAAATACTGTAA
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