EMLSAG00000009326, EMLSAG00000009326-692092 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009326
Unique NameEMLSAG00000009326-692092
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009326 vs. C. finmarchicus
Match: gi|592910596|gb|GAXK01047779.1| (TSA: Calanus finmarchicus comp74612_c6_seq2 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 8.701e+0
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 0 
Query:    7 DGVHAVLDIGYIPTDAQYNVTGMDPMGNE 35
            DG+++V DI       QYN T ++ MG E
Sbjct:  325 DGLNSVEDISSSQAHIQYNATEVEVMGGE 411
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BLAST of EMLSAG00000009326 vs. C. finmarchicus
Match: gi|592910597|gb|GAXK01047778.1| (TSA: Calanus finmarchicus comp74612_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 8.873e+0
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 0 
Query:    7 DGVHAVLDIGYIPTDAQYNVTGMDPMGNE 35
            DG+++V DI       QYN T ++ MG E
Sbjct:  325 DGLNSVEDISSSQAHIQYNATEVEVMGGE 411
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BLAST of EMLSAG00000009326 vs. C. finmarchicus
Match: gi|592769965|gb|GAXK01184603.1| (TSA: Calanus finmarchicus comp135926_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 9.720e+0
Identity = 13/37 (35.14%), Postives = 19/37 (51.35%), Query Frame = 0 
Query:    2 IKAYEDGVHAVLDIG------YIPTDAQYNVTGMDPM 32
            IKAY+   H   D        ++PTD  ++  G+DPM
Sbjct: 2923 IKAYKVNYHLQKDDSKNFSKEFLPTDRTFSAVGLDPM 3033
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BLAST of EMLSAG00000009326 vs. C. finmarchicus
Match: gi|592769966|gb|GAXK01184602.1| (TSA: Calanus finmarchicus comp135926_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 9.721e+0
Identity = 13/37 (35.14%), Postives = 19/37 (51.35%), Query Frame = 0 
Query:    2 IKAYEDGVHAVLDIG------YIPTDAQYNVTGMDPM 32
            IKAY+   H   D        ++PTD  ++  G+DPM
Sbjct: 2938 IKAYKVNYHLQKDDSKNFSKEFLPTDRTFSAVGLDPM 3048
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BLAST of EMLSAG00000009326 vs. L. salmonis peptides
Match: EMLSAP00000009326 (pep:novel supercontig:LSalAtl2s:LSalAtl2s595:823055:823268:-1 gene:EMLSAG00000009326 transcript:EMLSAT00000009326 description:"maker-LSalAtl2s595-augustus-gene-7.6")

HSP 1 Score: 95.1301 bits (235), Expect = 9.124e-28
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 
Query:    1 MIKAYEDGVHAVLDIGYIPTDAQYNVTGMDPMGNEIQLTFELKQK 45
            MIKAYEDGVHAVLDIGYIPTDAQYNVTGMDPMGNEIQLTFELKQK
Sbjct:    1 MIKAYEDGVHAVLDIGYIPTDAQYNVTGMDPMGNEIQLTFELKQK 45
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BLAST of EMLSAG00000009326 vs. L. salmonis peptides
Match: EMLSAP00000003904 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2110:17074:17924:-1 gene:EMLSAG00000003904 transcript:EMLSAT00000003904 description:"maker-LSalAtl2s2110-snap-gene-0.2")

HSP 1 Score: 42.3578 bits (98), Expect = 2.757e-7
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 0 
Query:    1 MIKAYEDGVHAVLDIGYIPTDAQYNVTGMDPMGNEIQLTFELKQK 45
            +IK YE G  A LDI Y P +  Y V G DP+ + +  TFE KQK
Sbjct:   10 LIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQK 54
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009326 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009326 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592910596|gb|GAXK01047779.1|8.701e+041.38TSA: Calanus finmarchicus comp74612_c6_seq2 transc... [more]
gi|592910597|gb|GAXK01047778.1|8.873e+041.38TSA: Calanus finmarchicus comp74612_c6_seq1 transc... [more]
gi|592769965|gb|GAXK01184603.1|9.720e+035.14TSA: Calanus finmarchicus comp135926_c1_seq2 trans... [more]
gi|592769966|gb|GAXK01184602.1|9.721e+035.14TSA: Calanus finmarchicus comp135926_c1_seq1 trans... [more]
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BLAST of EMLSAG00000009326 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000093269.124e-28100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s595:82305... [more]
EMLSAP000000039042.757e-748.89pep:novel supercontig:LSalAtl2s:LSalAtl2s2110:1707... [more]
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BLAST of EMLSAG00000009326 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009326 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009326 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009326 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s595supercontigLSalAtl2s595:823055..823268 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s595-augustus-gene-7.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009326 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009326EMLSAT00000009326-705173Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s595:823055..823268-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009326-692092 ID=EMLSAG00000009326-692092|Name=EMLSAG00000009326|organism=Lepeophtheirus salmonis|type=gene|length=214bp|location=Sequence derived from alignment at LSalAtl2s595:823055..823268- (Lepeophtheirus salmonis)
CTACCAGAAAATATGATCAAAGCATATGAAGATGGGGTCCATGCAGTATT
AGATATTGGTTATATTCCCACTGATGCACAATACAATGTCACTGGAATGG
GTAAATTATACATATATAATACTGAAAATAAAATAATAGTATAGCATAAT
TTATATCATTTCAGATCCGATGGGAAATGAGATTCAATTGACTTTTGAAC
TGAAGCAAAAATAA
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