EMLSAG00000010333, EMLSAG00000010333-693099 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010333
Unique NameEMLSAG00000010333-693099
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000010333 vs. C. finmarchicus
Match: gi|592846673|gb|GAXK01110871.1| (TSA: Calanus finmarchicus comp331813_c3_seq7 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 4.254e+0
Identity = 18/47 (38.30%), Postives = 24/47 (51.06%), Query Frame = 0 
Query:    2 EFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSR 48
            E +LP+   LL PQE Q    +  P +GF LL  +VY   +  R  R
Sbjct:  101 ETWLPL---LLVPQEEQ----QPRPVVGFRLLFTIVYSNSLWKRM*R 220
[Close]
BLAST of EMLSAG00000010333 vs. C. finmarchicus
Match: gi|592846659|gb|GAXK01110885.1| (TSA: Calanus finmarchicus comp331813_c4_seq8 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 4.877e+0
Identity = 18/47 (38.30%), Postives = 24/47 (51.06%), Query Frame = 0 
Query:    2 EFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSR 48
            E +LP+   LL PQE Q    +  P +GF LL  +VY   +  R  R
Sbjct:  111 ETWLPL---LLVPQEEQ----QPRPVVGFRLLFTIVYSNSLWKRM*R 230
[Close]
BLAST of EMLSAG00000010333 vs. C. finmarchicus
Match: gi|592846678|gb|GAXK01110866.1| (TSA: Calanus finmarchicus comp331813_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 4.938e+0
Identity = 18/47 (38.30%), Postives = 24/47 (51.06%), Query Frame = 0 
Query:    2 EFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSR 48
            E +LP+   LL PQE Q    +  P +GF LL  +VY   +  R  R
Sbjct:  101 ETWLPL---LLVPQEEQ----QPRPVVGFRLLFTIVYSNSLWKRM*R 220
[Close]
BLAST of EMLSAG00000010333 vs. C. finmarchicus
Match: gi|592846661|gb|GAXK01110883.1| (TSA: Calanus finmarchicus comp331813_c4_seq6 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 4.964e+0
Identity = 18/47 (38.30%), Postives = 24/47 (51.06%), Query Frame = 0 
Query:    2 EFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSR 48
            E +LP+   LL PQE Q    +  P +GF LL  +VY   +  R  R
Sbjct:  151 ETWLPL---LLVPQEEQ----QPRPVVGFRLLFTIVYSNSLWKRM*R 270
[Close]
BLAST of EMLSAG00000010333 vs. C. finmarchicus
Match: gi|592956271|gb|GAXK01002285.1| (TSA: Calanus finmarchicus comp90865_c7_seq4 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 5.421e+0
Identity = 13/50 (26.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:    1 MEFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSRIL 50
            +  FLP S  LL P  +  +++  +PA+ +++   L+Y+  +++  S +L
Sbjct:  211 INLFLPPSQLLLHPFCKFYSTSPRSPALHYAIAKQLIYYNILLITSSILL 360
[Close]
BLAST of EMLSAG00000010333 vs. C. finmarchicus
Match: gi|592956272|gb|GAXK01002284.1| (TSA: Calanus finmarchicus comp90865_c7_seq3 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 5.432e+0
Identity = 13/50 (26.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:    1 MEFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSRIL 50
            +  FLP S  LL P  +  +++  +PA+ +++   L+Y+  +++  S +L
Sbjct:  211 INLFLPPSQLLLHPFCKFYSTSPRSPALHYAIAKQLIYYNILLITSSILL 360
[Close]
BLAST of EMLSAG00000010333 vs. C. finmarchicus
Match: gi|592956260|gb|GAXK01002296.1| (TSA: Calanus finmarchicus comp90865_c10_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 5.488e+0
Identity = 13/50 (26.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:    1 MEFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSRIL 50
            +  FLP S  LL P  +  +++  +PA+ +++   L+Y+  +++  S +L
Sbjct: 1103 INLFLPPSQLLLHPFCKFYSTSPRSPALHYAIAKQLIYYNILLITSSILL 1252
[Close]
BLAST of EMLSAG00000010333 vs. L. salmonis peptides
Match: EMLSAP00000010333 (pep:novel supercontig:LSalAtl2s:LSalAtl2s684:348623:348819:1 gene:EMLSAG00000010333 transcript:EMLSAT00000010333 description:"maker-LSalAtl2s684-snap-gene-3.0")

HSP 1 Score: 120.553 bits (301), Expect = 2.336e-37
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MEFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSRILTDPDSSKNI 59
            MEFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSRILTDPDSSKNI
Sbjct:    1 MEFFLPISVCLLSPQERQINSNRINPAIGFSLLHNLVYHGEIIVRRSRILTDPDSSKNI 59
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010333 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000010333 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592846673|gb|GAXK01110871.1|4.254e+038.30TSA: Calanus finmarchicus comp331813_c3_seq7 trans... [more]
gi|592846659|gb|GAXK01110885.1|4.877e+038.30TSA: Calanus finmarchicus comp331813_c4_seq8 trans... [more]
gi|592846678|gb|GAXK01110866.1|4.938e+038.30TSA: Calanus finmarchicus comp331813_c3_seq2 trans... [more]
gi|592846661|gb|GAXK01110883.1|4.964e+038.30TSA: Calanus finmarchicus comp331813_c4_seq6 trans... [more]
gi|592956271|gb|GAXK01002285.1|5.421e+026.00TSA: Calanus finmarchicus comp90865_c7_seq4 transc... [more]
gi|592956272|gb|GAXK01002284.1|5.432e+026.00TSA: Calanus finmarchicus comp90865_c7_seq3 transc... [more]
gi|592956260|gb|GAXK01002296.1|5.488e+026.00TSA: Calanus finmarchicus comp90865_c10_seq1 trans... [more]
back to top
BLAST of EMLSAG00000010333 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000103332.336e-37100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s684:34862... [more]
back to top
BLAST of EMLSAG00000010333 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000010333 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000010333 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000010333 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s684supercontigLSalAtl2s684:348623..348819 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s684-snap-gene-3.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010333 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010333EMLSAT00000010333-706180Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s684:348623..348819+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010333-693099 ID=EMLSAG00000010333-693099|Name=EMLSAG00000010333|organism=Lepeophtheirus salmonis|type=gene|length=197bp|location=Sequence derived from alignment at LSalAtl2s684:348623..348819+ (Lepeophtheirus salmonis)
ATGGAGTTTTTCTTGCCCATTAGTGTATGCCTCCTAAGCCCACAAGAAAG
GCAAATAAACTCAAATAGAATAAACCCTGCAATCGGCTTGTTACTTTTGA
TAATAGCTCACTTCTCCACAATTTAGTTTATCATGGTGAAATCATTGTAA
GGAGAAGTAGAATCTTGACGGATCCAGACTCTTCAAAAAACATTTAA
back to top
Add to Basket