EMLSAG00000010920, EMLSAG00000010920-693686 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010920
Unique NameEMLSAG00000010920-693686
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000010920 vs. GO
Match: - (symbol:ZBED4 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR003656 InterPro:IPR008906 InterPro:IPR012337 Pfam:PF02892 Pfam:PF05699 PROSITE:PS50808 SMART:SM00614 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 SUPFAM:SSF53098 TreeFam:TF322818 OMA:HPTVLIQ OrthoDB:EOG74R1QQ GeneTree:ENSGT00530000063354 EMBL:AAEX03007146 RefSeq:XP_005625792.1 RefSeq:XP_005625793.1 RefSeq:XP_005625794.1 RefSeq:XP_005625795.1 Ensembl:ENSCAFT00000001110 GeneID:481197 Uniprot:F1PWQ3)

HSP 1 Score: 42.3578 bits (98), Expect = 1.511e-4
Identity = 23/68 (33.82%), Postives = 40/68 (58.82%), Query Frame = 0
Query:    1 MNLIVSKGLAE---IKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NL+VS+ +     +++ +   + I E V RS  A +KL   QK+  L +  L+QD P++ N +F+ML
Sbjct:  824 VNLVVSEAIKSQRMVQNLLSIARKICERVHRSPKAKEKLAELQKEYELPQHHLIQDVPSKWNTSFHML 891          
BLAST of EMLSAG00000010920 vs. C. finmarchicus
Match: gi|592896725|gb|GAXK01061650.1| (TSA: Calanus finmarchicus comp3740626_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 2.450e-2
Identity = 17/56 (30.36%), Postives = 31/56 (55.36%), Query Frame = 0
Query:    7 KGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTF 62
            K +  + + + K KLI ++  +STVA+D+L+   K+MG+   +      TR +  F
Sbjct:   34 KNVPGMTAVLSKGKLIAKFCHQSTVAMDQLRDAAKKMGIDFRKPQNPNKTRWDSQF 201          
BLAST of EMLSAG00000010920 vs. C. finmarchicus
Match: gi|592799649|gb|GAXK01154919.1| (TSA: Calanus finmarchicus comp703280_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.130e-1
Identity = 21/71 (29.58%), Postives = 34/71 (47.89%), Query Frame = 0
Query:    1 MNLIVSKGLAE---IKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESR---LMQDYPTRSNGTFYML 65
            + L++   L E   IK+ I   + I  +  +S      +   Q + G  +S+   L+QD PTR N +F ML
Sbjct:  597 LQLVIKDELFEKPSIKALIKTCRHICTFANQSVQLSQSVVTKQIEAGKEKSQCLLLLQDVPTRWNSSFLML 809          
BLAST of EMLSAG00000010920 vs. C. finmarchicus
Match: gi|592897215|gb|GAXK01061160.1| (TSA: Calanus finmarchicus comp783181_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.766e+0
Identity = 17/58 (29.31%), Postives = 31/58 (53.45%), Query Frame = 0
Query:    3 LIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQ-----KQMGLSESRLMQDYP 55
            + ++K +AEI   IDK K  +E+ ++  + LD+++++      K  G    R   DYP
Sbjct: 1918 IALTKPMAEIMQIIDKNKEQIEFAKKE-IDLDQVEISNFEDSLKFSGFVLERQNLDYP 2088          
BLAST of EMLSAG00000010920 vs. L. salmonis peptides
Match: EMLSAP00000010920 (pep:novel supercontig:LSalAtl2s:LSalAtl2s72:719949:720232:-1 gene:EMLSAG00000010920 transcript:EMLSAT00000010920 description:"snap_masked-LSalAtl2s72-processed-gene-6.4")

HSP 1 Score: 131.724 bits (330), Expect = 1.398e-41
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML
Sbjct:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65          
BLAST of EMLSAG00000010920 vs. Select Arthropod Genomes
Match: gb|EEC20081.1| (conserved hypothetical protein [Ixodes scapularis])

HSP 1 Score: 48.9062 bits (115), Expect = 8.627e-8
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 0
Query:    1 MNLIV----SKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NL+V    +K  AE++ T+   + IV + R S  A  +L+  Q + GL   +L+QD PT+ N TFYM+
Sbjct:   11 LNLVVKALLTKSGAELEETLKAARAIVGHFRHSASAQRQLEAIQLRHGLPVHKLLQDVPTKWNSTFYMV 79          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|642071523|emb|CDQ88504.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 66.2402 bits (160), Expect = 3.495e-12
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            + LIV   L  +K T+ KVK  VE   RSTV  +KLK TQ QMG+ E R  QD  TR N TFYML
Sbjct:   39 IKLIVRDALKVMKPTVHKVKAAVENFHRSTVGAEKLKFTQCQMGMPELRPKQDCTTRWNSTFYML 103          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|1130003275|ref|XP_019716757.1| (PREDICTED: zinc finger BED domain-containing protein 4-like [Hippocampus comes])

HSP 1 Score: 65.4698 bits (158), Expect = 1.679e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NL+V   L  +K T DKVK IVE+  RST A  KLK TQ+QMG+ E +L Q+  TR N TF+ML
Sbjct:   67 LNLVVRDALKVMKPTADKVKGIVEFFHRSTTATQKLKSTQQQMGMPELKLKQECITRWNSTFHML 131          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|1035237249|ref|XP_016891160.1| (PREDICTED: LOW QUALITY PROTEIN: zinc finger BED domain-containing protein 1-like [Cynoglossus semilaevis])

HSP 1 Score: 66.6254 bits (161), Expect = 2.159e-11
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NLIV   L EI+  + K+K +VEY +RSTVA DKLK  Q+QMG  +  L QD  T  N T+YML
Sbjct:  172 LNLIVRAALKEIQDILQKIKAVVEYFQRSTVASDKLKAIQQQMGQEQLCLRQDVATSWNSTYYML 236          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|1129905481|ref|XP_019721301.1| (PREDICTED: zinc finger BED domain-containing protein 4-like [Hippocampus comes])

HSP 1 Score: 64.6994 bits (156), Expect = 9.034e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NL+V   L  +K T DKVK IVE+  RST A  KLK TQ+QMG+ E +L Q+  TR N TF+ML
Sbjct:  156 LNLVVRDALKVMKPTADKVKGIVEFFHRSTTATQKLKSTQQQMGMPELKLKQECITRWNSTFHML 220          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|1130204336|ref|XP_019773035.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Dendroctonus ponderosae])

HSP 1 Score: 62.7734 bits (151), Expect = 5.453e-10
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NL+V  GL  I S ++K+K IV + +RS+ AL KLK TQ QMGL E ++ QD  TR N T  M+
Sbjct:  292 INLMVQNGLKSINSILEKLKTIVSFFKRSSSALAKLKTTQLQMGLPELKIKQDVKTRWNSTLNMV 356          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|914570852|gb|KOB74120.1| (Uncharacterized protein OBRU01_02555 [Operophtera brumata])

HSP 1 Score: 62.7734 bits (151), Expect = 5.615e-10
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 0
Query:    1 MNLIVSKGLA--EIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSES-RLMQDYPTRSNGTFYML 65
            +NL+V   L   E+K+TID VK IV Y +RST A++KL   Q Q G+++  RL+Q  PTR N  F+ML
Sbjct:  287 LNLVVENALEVEEVKTTIDTVKCIVSYYKRSTTAMEKLLRYQIQTGVAQPKRLLQSVPTRWNSVFFML 354          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|761911971|ref|XP_011405235.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Amphimedon queenslandica])

HSP 1 Score: 62.003 bits (149), Expect = 9.716e-10
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 0
Query:    1 MNLIVSKGLA---EIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NLIVS  L+   E +S I  VK IV + RRST A+DKL V Q ++ + + +L+QD  TR N  FYML
Sbjct:  157 LNLIVSNSLSSVPEAQSLIQSVKNIVTFFRRSTKAMDKLTVMQSRLNIPQHKLIQDIETRWNSVFYML 224          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|985413578|ref|XP_015372282.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Diuraphis noxia])

HSP 1 Score: 60.4622 bits (145), Expect = 3.371e-9
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0
Query:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSE-SRLMQDYPTRSNGTFYML 65
            +NLIV   L +IK T  KVK IVEY +RST+A +KL   Q+Q+G S    L+QD  TR N TF+M 
Sbjct:  276 LNLIVQSSLDQIKETRVKVKSIVEYFKRSTLATEKLNQMQEQLGYSPVHTLIQDVVTRWNSTFHMF 341          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|1070196823|ref|XP_018368704.1| (PREDICTED: zinc finger BED domain-containing protein 1-like [Trachymyrmex cornetzi])

HSP 1 Score: 59.3066 bits (142), Expect = 9.095e-9
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 0
Query:    1 MNLIVSKGL--AEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NL+    L    +K  +  VK IV Y R STVA+DKL+  QKQ+   E +L+QD PTR N +FYM+
Sbjct:  267 INLVALDALETTSVKPILKHVKDIVTYFRCSTVAMDKLRNMQKQLHKKEFKLLQDTPTRWNSSFYMI 333          
BLAST of EMLSAG00000010920 vs. nr
Match: gi|914576302|gb|KOB78200.1| (Uncharacterized protein OBRU01_02883 [Operophtera brumata])

HSP 1 Score: 58.9214 bits (141), Expect = 9.461e-9
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    1 MNLIVSKGLAEIKSTIDKVKLIVEYVRRSTVALDKLKVTQKQMGLSESRLMQDYPTRSNGTFYML 65
            +NLIV  G+ EI+ T   V+ IV + RRS  A  +LK TQ++MGLS  +L  D PTR N T  ML
Sbjct:   81 LNLIVQAGVKEIEETGRNVRAIVTFFRRSAHASAQLKATQERMGLSMLKLKIDVPTRWNSTMLML 145          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010920 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-1.511e-433.82symbol:ZBED4 "Uncharacterized protein" species:961... [more]
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BLAST of EMLSAG00000010920 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592896725|gb|GAXK01061650.1|2.450e-230.36TSA: Calanus finmarchicus comp3740626_c0_seq1 tran... [more]
gi|592799649|gb|GAXK01154919.1|6.130e-129.58TSA: Calanus finmarchicus comp703280_c0_seq1 trans... [more]
gi|592897215|gb|GAXK01061160.1|7.766e+029.31TSA: Calanus finmarchicus comp783181_c1_seq2 trans... [more]
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BLAST of EMLSAG00000010920 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000109201.398e-41100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s72:719949... [more]
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BLAST of EMLSAG00000010920 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010920 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
gb|EEC20081.1|8.627e-837.68conserved hypothetical protein [Ixodes scapularis][more]
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BLAST of EMLSAG00000010920 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|642071523|emb|CDQ88504.1|3.495e-1253.85unnamed protein product [Oncorhynchus mykiss][more]
gi|1130003275|ref|XP_019716757.1|1.679e-1153.85PREDICTED: zinc finger BED domain-containing prote... [more]
gi|1035237249|ref|XP_016891160.1|2.159e-1152.31PREDICTED: LOW QUALITY PROTEIN: zinc finger BED do... [more]
gi|1129905481|ref|XP_019721301.1|9.034e-1153.85PREDICTED: zinc finger BED domain-containing prote... [more]
gi|1130204336|ref|XP_019773035.1|5.453e-1049.23PREDICTED: zinc finger BED domain-containing prote... [more]
gi|914570852|gb|KOB74120.1|5.615e-1048.53Uncharacterized protein OBRU01_02555 [Operophtera ... [more]
gi|761911971|ref|XP_011405235.1|9.716e-1048.53PREDICTED: zinc finger BED domain-containing prote... [more]
gi|985413578|ref|XP_015372282.1|3.371e-951.52PREDICTED: zinc finger BED domain-containing prote... [more]
gi|1070196823|ref|XP_018368704.1|9.095e-946.27PREDICTED: zinc finger BED domain-containing prote... [more]
gi|914576302|gb|KOB78200.1|9.461e-949.23Uncharacterized protein OBRU01_02883 [Operophtera ... [more]

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BLAST of EMLSAG00000010920 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s72supercontigLSalAtl2s72:719949..720232 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s72-processed-gene-6.4
Biotypeprotein_coding
EvidenceIEA
NotePREDICTED: LOW QUALITY PROTEIN: zinc finger BED domain-containing protein 1-like [Cynoglossus semilaevis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010920 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010920EMLSAT00000010920-706767Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s72:719949..720232-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010920-693686 ID=EMLSAG00000010920-693686|Name=EMLSAG00000010920|organism=Lepeophtheirus salmonis|type=gene|length=284bp|location=Sequence derived from alignment at LSalAtl2s72:719949..720232- (Lepeophtheirus salmonis)
TTGATGCATGCGTATCCGACAACACAACTAATATAAAGAAAGCTATTCAA ATCATTGGTTGGCCTCTTTTGTTCTGCTTAGCACATACTATGAACCTCAT AGTCAGCAAAGGACTTGCTGAAATAAAATCAACAATAGATAAAGTCAAAC TTATTGTTGAATATGTGCGTCGAAGTACAGTTGCCTTGGACAAACTAAAG GTGACTCAGAAGCAGATGGGTTTGAGTGAATCTCGTCTCATGCAGGATTA CCCTACTCGTTCGAATGGAACATTCTATATGTTG
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