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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000012224 vs. L. salmonis peptides
Match: EMLSAP00000012224 (pep:novel supercontig:LSalAtl2s:LSalAtl2s88:264562:269244:-1 gene:EMLSAG00000012224 transcript:EMLSAT00000012224 description:"snap_masked-LSalAtl2s88-processed-gene-2.7") HSP 1 Score: 138.658 bits (348), Expect = 4.435e-44 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 1 MCEKIDSACSTTNYNFAVIAIVFLLSVFDQNRFAESFSSSSSSPFIFTGLFVRNSSSSSSKSSSSYGEKIGL 72
MCEKIDSACSTTNYNFAVIAIVFLLSVFDQNRFAESFSSSSSSPFIFTGLFVRNSSSSSSKSSSSYGEKIGL
Sbjct: 1 MCEKIDSACSTTNYNFAVIAIVFLLSVFDQNRFAESFSSSSSSPFIFTGLFVRNSSSSSSKSSSSYGEKIGL 72
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012224 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of EMLSAG00000012224 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EMLSAP00000012224 | 4.435e-44 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s88:264562... | [more] |
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s88 | supercontig | LSalAtl2s88:264562..269244 - |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Description | snap_masked-LSalAtl2s88-processed-gene-2.7 |
| Biotype | protein_coding |
| Evidence | IEA |
| Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s88:264562..269244- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000012224-694990 ID=EMLSAG00000012224-694990|Name=EMLSAG00000012224|organism=Lepeophtheirus salmonis|type=gene|length=4683bp|location=Sequence derived from alignment at LSalAtl2s88:264562..269244- (Lepeophtheirus salmonis)
ATGTGTGAAAAGATAGACTCCGCCTGTAGTGTATGTATTATTACAGAGTT
GAGTTATTTTGTCAGATTTTCTTTTTTTATCTATACAAAAGTAGTCTAAA
ATTAAATAAATACATAGTTAAAAAGCCGGCCTTATAGTGTATGGAAGAGG
AAGAAAAGAGTTCAGATACACTATGTAAAATGAATTATATTCTTTTTTTA
TTCGTCGTTATGAAAAACTCGTAAAAAAGAAAATCCAAAAAGCTGAGGAA
CTTTTAACCAGAAATTAAATAACTTAAATAATTATAGATGAAAATAGTAT
TACCCAAGGAAGGGCAGATTGGTATTATCCTATTATTATGTTAAAAAAGG
GAGAAAAAATAACGTGACCACTACCCTGATAATTTGAAGAATGTTTGTTA
GAAGAACAGTATAACTATGCCGTTTCATTAAGATGATGGAAATAAACAAG
ATACCACTGTATATCTAGCAATAATATAGGCAGAAATTACTCCGATGTCG
ATCTTCAATTCTACTCAGTGTCCAACAAGGGATTACACTAGTAACTCCAC
AACGAATCCTCATAGTTACTCTTCGTCTATCATGCACTTGTGATTATTTG
ATATTTTATACTTATTCAAGAATAATATTGACAGCTTTGGTAAAAAAAAA
ACCATATATTCAGATAGCAACTACAATAAGCTGGGCCTTCTTCCATTATA
ATATTATTTTCATCTATATATGCATATATATTAAATATATCAAAATGTGC
TCTAGTACTATTCGGCGGAGGAAAATTTGGGACATTAGGCTGAAAAAGAA
TATTGATACATATGATGACATATTATAATTCAATTTAAAATGACATTATA
ATAAATAGGCATTGTATTTACTCTCTTATTTTTACTATAAAACAACTAAT
GAGTTTCATTTTATAAGGGTAAATTAATGGGTGCTGTTTTACAAAATAAT
ATTTTTTATTAAATTTAATTATACTCCTAATATAACCTTAACTGTTAAAG
TACTCTCAATACATTCAATAATAGGGTGCTCAATTTCTTGCTGACCTTAG
ATCTAAGCCCCAAGGAGTAAATCTGAAAATGAAGAGTGATAATTCCAGCG
AGATAGCTTTTTCTTCTTCTCCCATCTACCAAAACTGTTATTTTAAGTAG
CAAAAATGCATACATATTACTTTGTTGTGTTTATATAATAATCATTACTG
AAAATAATTAATAAAAAATATTATTCTATGAAAGAATACTCATTAATTTA
GCTATATGATATGTAGTATATGAACACAACTCATATCATAATTGAATTAA
AAAATGCAATTATATACATTAAATATCCTTTTTTGACCAAATTGTCATTC
GGCAAAATGTTTTCAGCCAATAGTTTTTGTCTTACTCCCCAAAATGTGTT
CATTTTATTGCGTATATCAGAGTATCAATTAGATATGGGCTGATGTCAAA
AAAATATTTYCCGATCCGATTTGATATTTTACAAGCGATAAGATGTACCC
ATATTCATGAGAGTATTTGCTTAGTTTGCCAACAATTTCATATCCAAAGG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAATATTTTTTAAAATCC
AAACTAAATATTTATTAGTAGATTTTCATTGCTGAAGATACATATAATTA
TATATTCAGCCATTAAAATATATAATTTATCGATTAATTGATCTGTCGTG
AACCATCTTGAAATATATTTGTCCACATACTTAAATGTGAAATTTTCAAT
TTCACTTGGCCCCATTGTTTTTATAATATGAGCTTTAAAGATAAATAGAT
ATTATCTTGGATTTTAAAGCTAACAGAAAGGCAAACTTTATATCGCACTC
TTTTTAAAAAGTATGTAAGTCGTAAGCAATAATAGAGGCATTCATTTAAT
CATTCATCTAAGTGTGAGTMCTCTGARAATTAAACWTTTCCTGCCTACCC
ATATCGAAAATAATTCACTTCCTTTTTTTTTATATTATATCATATAAAAT
ATCGGAGCAAATATAGAATTTTCTCCAATGCCAATACGATGCAGATATTT
GATATTTTGTCCCATTTATTGTTGTTTCGATTTTGATCCAATATATGAGT
CCACGTTAAGTATCGATAAAAAATACATAACATTTAGATGTCACTCCAAG
CCTTCGAACTCAAGAAAAGTACTTTTTTTTTCCTTCAAAATTTCAAAAAG
TACATACTATATATGTTTGCTAACTTTTTTCAGTTGAATAAATAAAGTTT
AAAAAGCATTTCTAAAAATATCTCTGAAATGTAATTTTGCTATTATTATG
GAAGAATAGTTTAAGGATAAATAATATGTAACTTATATTTGTACTGTTTA
TAAAACGCACTAATTTCTTATTTAAATCTTTAATACTTTTTTTTGTAGGG
TTATTTTCTACAATTTCCATTCAATCAGAACTTATTATTTAATTGTAAAA
AAATAAAATATATTTGTGCTGAGTTACTTTGAATATATAAAAAAACACTA
TCACAGATTCTAAAAATATTTGTATGAATAAAAAAACATTATGATTGATA
GATAAAGTAGACTTCTTCGAAGTAAGAATTTCTGTTTATTTTGTTTATAT
TTGATTGACTACTTTCAAAATAAATAGTCCCTGGTCCTAATCCCTAGTTA
TAATGCCATTAAATCCGTAATCAAAGCAATTATTATTCCATTGCTTCGTT
TATGACTTATCCAAGCAATGATACTTTTTTCTTAAAACCTCTTATGGAGG
ATATTTTAAGAATTTTAAAGAAATATCATTAATTTTCTAAGCTTTTAAGG
CATTGAACAACCTCTAAATGTTATAATTTTTAATTTTTTTCGATTGATAC
ACTGATTTGTAAAACATTACGAACTTTTTTTTTCAGGGAGTGGGGATGAC
AAAAAAAGTTAAAAATTTAATTTTCACCACAACATATGGATTGGCATTCT
AAATTGAACAATGTACCAACTACAATATAATGCTTGAAGGAATCGAACGT
ATTTAATATCATATAGGGACTGGACTTTGTTGGAATAATAAATTTATTTA
ATGATAAACCTAGTACATCCATTGTTTACCTAATATCATTAAAAATATTT
ATATGGATATAATATAGATTAGATAAATGAACTCTGACATGAATATAACT
CTATGACTAATTATAGGACTAAACATAAACCTATAAATGTATCTATGTAC
ATATGTATATAATAATCAATTATATGAACGAATGGACGTATGTATGAAAT
TATTGAAAGTTTGCAGAGGAAGAATAACTCCTAAATTACTCAACACCGTG
TACAGTTCTTTTATGTTTTTTGAGGTTGCCAGTTCCGTAGCCTGCAAAAG
GTTTATGACAAATGTCACAATCCCGTGTGTAATGCTCATGAGCCTCCTTC
ACATGTCTTGTCATATGATATTTAGATACATACATTTTTCCACAGATATT
ACACTTGTAGTTCTTTTCAAATGTATGGAGGGACTTTATATGTTGAACCA
TGACAGATTTTCGATTAAAGAGTCGCCCGCAGTACTCGCATTTAAAATCC
CGAGTTCTTTCATGGATGGCTTTAATATGTTTCACAAGCTCAGAACGGTT
ATAAAACTCCATTTCACAGGAGCTGCATTTGTGATGTTTAATCCGTTCAT
GGACTCTTTCGATATGCCATTTGAGTCCACTATCATGATAAAAAACTTTA
GAACAAATGTGACAAATTGAAGCAACTTTCCTATCATGAACTCCATCAAT
ATGCCTTTGTAACTCTTTTGGGGAATTAAAGCCTTTAAAACACTTTTCAC
ATCGAAACATTCTTTTCTTGAGATGAACTCGAAGAACATGGTTCTTTAAG
AGTCTCTCAAGTGCAAATTTACGTGGACATACTTCACATTTATAAATATG
TGAACTAGGATCATGCATAGTCTTGATATGGATTTTGAGTGCATATGTTC
CACACAGGACTTTATCGCAAAGACGACATTGATTTTTAAGAAAACGCTGA
TGAACTTCCTTCATATGCTTGGCTGCATCGGCTTTTGAGGGTGCACATAG
CTTACACTCCCTACAAGCATGCTCCATATGACTTCTTAAAGCTGATCTTG
TTGGAAAAACAGTTGAACAAAACTCACATTGTCGGGCTCGACCTTTGCGA
ATATGAGCTTCTGTACGGTGTTTTTTCAAAATATAGGAAGATTTATAGTA
TGTGTCACAGGAATTGCAATAATATTTAGAGTGAAGCTCAATATTATGTT
TTCTGAACTTTTTAAGACAACGAATTATAATTTTGCAGTCATTGCAATCG
TATTCCTTCTTTCTGTGTTCGATCAAAACAGATTCGGTTAGATATCTAGT
ATCACATTCTGAGCAGACATATCGACCACTCTCATCTATTGAAGGCTTCA
TATCTTCTTTTTGAGTACTTGTGGAAGKAGTTGTATCATTGTCATTATTA
GCTGAATCATTTTTATTATTATCGGAATCATTTTCGTTATTATCTGAATA
ATTTTCATTTTTAGCTGAATCATTTTCCTCGTCTTCGAGTTCTCCTTTTA
TATTTACAGGACTATTTGTAAGAAATTCTTCATCTTCCTCATCAAAATCA
TCATCATCCTATGGTGAAAAAATTGGTTTATAG back to top
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