EMLSAG00000012496, EMLSAG00000012496-695262 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012496
Unique NameEMLSAG00000012496-695262
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012496 vs. C. finmarchicus
Match: gi|592782169|gb|GAXK01172399.1| (TSA: Calanus finmarchicus comp2087926_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.456e+0
Identity = 15/34 (44.12%), Postives = 24/34 (70.59%), Query Frame = 0 
Query:   70 LTFILKDKSYHIRIECILKFLATECAIYTCILII 103
            + FILK K+Y+  I  +L+++ + C IYTC+L I
Sbjct:    5 INFILKRKAYNCNIVLVLRYMHS-CTIYTCMLNI 103
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BLAST of EMLSAG00000012496 vs. L. salmonis peptides
Match: EMLSAP00000012496 (pep:novel supercontig:LSalAtl2s:LSalAtl2s91:347389:348360:-1 gene:EMLSAG00000012496 transcript:EMLSAT00000012496 description:"snap-LSalAtl2s91-processed-gene-4.20")

HSP 1 Score: 209.149 bits (531), Expect = 9.037e-71
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 
Query:    1 MIVSTFCFIFKECTVELLFYMNASIAEYLILFMVLFDLVVCRLESSQVEWLRARLALTITELHENMILVLTFILKDKSYHIRIECILKFLATECAIYTCILIIPIN 106
            MIVSTFCFIFKECTVELLFYMNASIAEYLILFMVLFDLVVCRLESSQVEWLRARLALTITELHENMILVLTFILKDKSYHIRIECILKFLATECAIYTCILIIPIN
Sbjct:    1 MIVSTFCFIFKECTVELLFYMNASIAEYLILFMVLFDLVVCRLESSQVEWLRARLALTITELHENMILVLTFILKDKSYHIRIECILKFLATECAIYTCILIIPIN 106
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012496 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012496 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592782169|gb|GAXK01172399.1|1.456e+044.12TSA: Calanus finmarchicus comp2087926_c0_seq1 tran... [more]
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BLAST of EMLSAG00000012496 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000124969.037e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s91:347389... [more]
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BLAST of EMLSAG00000012496 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012496 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012496 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012496 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s91supercontigLSalAtl2s91:347389..348360 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s91-processed-gene-4.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012496 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012496EMLSAT00000012496-708343Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s91:347389..348360-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012496-695262 ID=EMLSAG00000012496-695262|Name=EMLSAG00000012496|organism=Lepeophtheirus salmonis|type=gene|length=972bp|location=Sequence derived from alignment at LSalAtl2s91:347389..348360- (Lepeophtheirus salmonis)
ATGATTGTATCTACGTTTTGTTTTATATTCAAAGAATGCACTGTTGAACT
CTTATTTTATATGTATTTTAAAACACTTGTGTCCAATACATTTCTTATTA
TTTATGTAAAATCATCAAGACTTTTCACGACCATTGCTTTAACGCTAAGA
TCCCCTCCACACACTCTCCATCTATATATGTATTTTGAATTGATTTATTA
AATGTGATATGCTACTTCTTTTTGTACTCTATATTAATTAATTAATGATT
ATCATTATATGAAATGTACGTCAGTTCTTTTTAATAATTACAGTATTCGT
ACTCTTTGATTCCTTTTTATTTTATTTTTTAAAGGAACGCATCAATTGCG
GAATATTTAATTCTTTTTATGGTTCTGTTTGACTTAGTGGTGTGTCGACT
TGAGTCAAGCCAAGTCGAGTGGTTAAGAGCAAGACTCGCCTTAACTATTA
CAGAGCTCCATGAAAATATGATTCTGGGTAGGGATGGGCAGGAATGCAAT
CTTTTTTTTTCAGAAAAAACGTTTCAAATACTCTCAAAAAATAATTTCTT
ACTTTAAAAAAACAAACCAAAAATAACTTAATAATATACATTTCCTAAAC
ATATCTGACATGGCTAATAAAAAAAGGAAAAACTACACTAAAAATCAGAG
CTTTTCTTCAGTTTTTTAATACAAATATTTAAGAGTCTGAGTTAACGACC
ATTGTCTGAGAAATTTGACAAAACGTCAAGTTCTTAAGTGATTAAACATT
CTAAATTTGTTGGAAGTTCAAAGGAAAGCCAGAGGAAGATTCGGATTCAT
TGCCACTAACCAATCAGTTTTTGAGGTCATGACTTGTAGATTGTTTTTCA
ATTTAGTTCTAACATTCATACTAAAGGATAAATCTTATCACATTCGTATA
GAATGCATACTGAAGTTTCTGGCTACAGAATGTGCAATTTATACTTGCAT
CCTGATTATTCCTATAAATTGA
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