EMLSAG00000012737, EMLSAG00000012737-695503 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012737
Unique NameEMLSAG00000012737-695503
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592871809|gb|GAXK01085753.1| (TSA: Calanus finmarchicus comp78591_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 2.193e-5
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 0 
Query:   19 FCLILFMVTTHGNILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYKGSKECEESKNKDYNPNVP 82
             C +L      G +LLP++ PV++    +       LL + HAV +G +E ++SK++D+NPNVP
Sbjct:  909 LCGLLGAQLGDGEVLLPVVGPVQLSWWWLTSFVCVCLLADTHAVDEGDEEGDKSKHEDHNPNVP 1100
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BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592905886|gb|GAXK01052489.1| (TSA: Calanus finmarchicus comp2094414_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.907e+0
Identity = 15/36 (41.67%), Postives = 19/36 (52.78%), Query Frame = 0 
Query:    2 IHSNFNAPRSLFFQYLGFCLILFMVTTHGNILLPMM 37
            IH NF   R +  Q LG CLI F + +    LLP +
Sbjct:  691 IHDNFKKSRKVSNQALGSCLICFCLCSCLKSLLPRL 798
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BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592831596|gb|GAXK01125948.1| (TSA: Calanus finmarchicus comp310080_c1_seq103 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.497e+0
Identity = 18/65 (27.69%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   25 MVTTHG-NILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYK----------GSKECEESKNKDYN 78
            M T+ G ++L+P +R  K  +STI    ++ ++TNI A  +           S++CE  + + Y+
Sbjct:  161 MATSEGSDMLVPPVRMCKTIMSTIPTPAVARIVTNIRADRQEEIEISLSKDNSEDCEPVQTRKYD 355
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BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592831616|gb|GAXK01125928.1| (TSA: Calanus finmarchicus comp310080_c1_seq83 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.583e+0
Identity = 18/65 (27.69%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   25 MVTTHG-NILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYK----------GSKECEESKNKDYN 78
            M T+ G ++L+P +R  K  +STI    ++ ++TNI A  +           S++CE  + + Y+
Sbjct:  161 MATSEGSDMLVPPVRMCKTIMSTIPTPAVARIVTNIRADRQEEIEISLSKDNSEDCEPVQTRKYD 355
[Close]
BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592831624|gb|GAXK01125920.1| (TSA: Calanus finmarchicus comp310080_c1_seq75 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.593e+0
Identity = 18/65 (27.69%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   25 MVTTHG-NILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYK----------GSKECEESKNKDYN 78
            M T+ G ++L+P +R  K  +STI    ++ ++TNI A  +           S++CE  + + Y+
Sbjct:  161 MATSEGSDMLVPPVRMCKTIMSTIPTPAVARIVTNIRADRQEEIEISLSKDNSEDCEPVQTRKYD 355
[Close]
BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592831625|gb|GAXK01125919.1| (TSA: Calanus finmarchicus comp310080_c1_seq74 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.598e+0
Identity = 18/65 (27.69%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   25 MVTTHG-NILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYK----------GSKECEESKNKDYN 78
            M T+ G ++L+P +R  K  +STI    ++ ++TNI A  +           S++CE  + + Y+
Sbjct:  161 MATSEGSDMLVPPVRMCKTIMSTIPTPAVARIVTNIRADRQEEIEISLSKDNSEDCEPVQTRKYD 355
[Close]
BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592831627|gb|GAXK01125917.1| (TSA: Calanus finmarchicus comp310080_c1_seq72 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.598e+0
Identity = 18/65 (27.69%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   25 MVTTHG-NILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYK----------GSKECEESKNKDYN 78
            M T+ G ++L+P +R  K  +STI    ++ ++TNI A  +           S++CE  + + Y+
Sbjct:  161 MATSEGSDMLVPPVRMCKTIMSTIPTPAVARIVTNIRADRQEEIEISLSKDNSEDCEPVQTRKYD 355
[Close]
BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592831632|gb|GAXK01125912.1| (TSA: Calanus finmarchicus comp310080_c1_seq67 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.606e+0
Identity = 18/65 (27.69%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   25 MVTTHG-NILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYK----------GSKECEESKNKDYN 78
            M T+ G ++L+P +R  K  +STI    ++ ++TNI A  +           S++CE  + + Y+
Sbjct:  161 MATSEGSDMLVPPVRMCKTIMSTIPTPAVARIVTNIRADRQEEIEISLSKDNSEDCEPVQTRKYD 355
[Close]
BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592831633|gb|GAXK01125911.1| (TSA: Calanus finmarchicus comp310080_c1_seq66 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.607e+0
Identity = 18/65 (27.69%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   25 MVTTHG-NILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYK----------GSKECEESKNKDYN 78
            M T+ G ++L+P +R  K  +STI    ++ ++TNI A  +           S++CE  + + Y+
Sbjct:  161 MATSEGSDMLVPPVRMCKTIMSTIPTPAVARIVTNIRADRQEEIEISLSKDNSEDCEPVQTRKYD 355
[Close]
BLAST of EMLSAG00000012737 vs. C. finmarchicus
Match: gi|592831639|gb|GAXK01125905.1| (TSA: Calanus finmarchicus comp310080_c1_seq60 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.618e+0
Identity = 18/65 (27.69%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   25 MVTTHG-NILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYK----------GSKECEESKNKDYN 78
            M T+ G ++L+P +R  K  +STI    ++ ++TNI A  +           S++CE  + + Y+
Sbjct:  161 MATSEGSDMLVPPVRMCKTIMSTIPTPAVARIVTNIRADRQEEIEISLSKDNSEDCEPVQTRKYD 355
[Close]
BLAST of EMLSAG00000012737 vs. L. salmonis peptides
Match: EMLSAP00000012737 (pep:novel supercontig:LSalAtl2s:LSalAtl2s967:83515:84009:-1 gene:EMLSAG00000012737 transcript:EMLSAT00000012737 description:"maker-LSalAtl2s967-snap-gene-0.74")

HSP 1 Score: 176.792 bits (447), Expect = 1.017e-58
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 
Query:    1 MIHSNFNAPRSLFFQYLGFCLILFMVTTHGNILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYKGSKECEESKNKDYNPNVPTWI 85
            MIHSNFNAPRSLFFQYLGFCLILFMVTTHGNILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYKGSKECEESKNKDYNPNVPTWI
Sbjct:    1 MIHSNFNAPRSLFFQYLGFCLILFMVTTHGNILLPMMRPVKVPVSTIFVNPISSLLTNIHAVYKGSKECEESKNKDYNPNVPTWI 85
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012737 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012737 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592871809|gb|GAXK01085753.1|2.193e-535.94TSA: Calanus finmarchicus comp78591_c1_seq1 transc... [more]
gi|592905886|gb|GAXK01052489.1|1.907e+041.67TSA: Calanus finmarchicus comp2094414_c1_seq1 tran... [more]
gi|592831596|gb|GAXK01125948.1|3.497e+027.69TSA: Calanus finmarchicus comp310080_c1_seq103 tra... [more]
gi|592831616|gb|GAXK01125928.1|3.583e+027.69TSA: Calanus finmarchicus comp310080_c1_seq83 tran... [more]
gi|592831624|gb|GAXK01125920.1|3.593e+027.69TSA: Calanus finmarchicus comp310080_c1_seq75 tran... [more]
gi|592831625|gb|GAXK01125919.1|3.598e+027.69TSA: Calanus finmarchicus comp310080_c1_seq74 tran... [more]
gi|592831627|gb|GAXK01125917.1|3.598e+027.69TSA: Calanus finmarchicus comp310080_c1_seq72 tran... [more]
gi|592831632|gb|GAXK01125912.1|3.606e+027.69TSA: Calanus finmarchicus comp310080_c1_seq67 tran... [more]
gi|592831633|gb|GAXK01125911.1|3.607e+027.69TSA: Calanus finmarchicus comp310080_c1_seq66 tran... [more]
gi|592831639|gb|GAXK01125905.1|3.618e+027.69TSA: Calanus finmarchicus comp310080_c1_seq60 tran... [more]

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BLAST of EMLSAG00000012737 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000127371.017e-58100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s967:83515... [more]
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BLAST of EMLSAG00000012737 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012737 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012737 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012737 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s967supercontigLSalAtl2s967:83515..84009 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s967-snap-gene-0.74
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012737 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012737EMLSAT00000012737-708584Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s967:83515..84009-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012737-695503 ID=EMLSAG00000012737-695503|Name=EMLSAG00000012737|organism=Lepeophtheirus salmonis|type=gene|length=495bp|location=Sequence derived from alignment at LSalAtl2s967:83515..84009- (Lepeophtheirus salmonis)
ATGATTCATTCAAATTTTAATGCCCCTAGAAGTCTTTTCTTTCAATATCT
GGGATTCTGTCTTATCCTTTTCATGGTTACAACGTATTAACTTAAGTTGC
TGGTTAGAGAGCATGCAATTTTTAATTATTGTGTATATTTGTTAGTCGAC
GNCCAATTAACGGTATTGTTTCTGTAGTTTCCCGTAGTCTGACTCTAAAT
AAACAGATGGATAGTCTCTGGATGAGGCCACACTTGCTCCATCATTATAG
TATCCTCCACTAAGATTACTACTACTTTGATTTGGATGATCGTTTTTCCA
ACTTTTTGTTTTGACTTCAGGCATGGAAATATTCTTTTGCCAATGATGCG
TCCAGTAAAGGTCCCCGTCTCTACCATATTCGTTAACCCTATTAGCTCCC
TCTTGACAAATATACACGCAGTATACAAGGGAAGCAAAGAATGTGAGGAA
TCCAAAAATAAGGATTATAATCCCAATGTTCCTACATGGATTTAA
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