EMLSAG00000012954, EMLSAG00000012954-695720 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012954
Unique NameEMLSAG00000012954-695720
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012954 vs. C. finmarchicus
Match: gi|592942724|gb|GAXK01015829.1| (TSA: Calanus finmarchicus comp505947_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.006e+0
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 0 
Query:  372 GLYQFVLWREALKAEKDRV--VHTPSSGK 398
            GL+QFVLWREA + E++R   + T S+ K
Sbjct:  795 GLHQFVLWREAYRGERERASDIETRSARK 881
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BLAST of EMLSAG00000012954 vs. C. finmarchicus
Match: gi|592943958|gb|GAXK01014595.1| (TSA: Calanus finmarchicus comp8811_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 1.222e+0
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 0 
Query:  374 YQFVLWREALKAEKDRVV 391
            Y+FVLWREALK EK ++V
Sbjct:  273 YKFVLWREALKDEKTKMV 326
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BLAST of EMLSAG00000012954 vs. C. finmarchicus
Match: gi|592815977|gb|GAXK01138591.1| (TSA: Calanus finmarchicus comp102445_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 2.833e+0
Identity = 19/50 (38.00%), Postives = 26/50 (52.00%), Query Frame = 0 
Query:   35 FQENSDTSNHMSVDDDDLENQDPSEIVKLEEDSFSHLVAPEDMLVVSKDE 84
             +E  +T     VD+D LE    + +V+L   S   +VA ED LVVS  E
Sbjct:  390 MEEGGETLEVRMVDEDGLEGLGNNLVVQLRGVSLVAMVA*EDNLVVSLSE 539
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BLAST of EMLSAG00000012954 vs. C. finmarchicus
Match: gi|592892692|gb|GAXK01065683.1| (TSA: Calanus finmarchicus comp5828_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 4.387e+0
Identity = 24/69 (34.78%), Postives = 33/69 (47.83%), Query Frame = 0 
Query:   49 DDDLENQ----------DP-SEIVKLEEDSFSHLVAPEDMLVVSK-----DEGVGEEIISSPHCSYEEI 101
            DD L NQ          DP +E +     +  HL APED ++ +      DEGVGE+ I +   +Y EI
Sbjct:  226 DDPLSNQNIKDRYYGVNDPVAEKLLKRASAMPHLEAPEDKMITTLYCGGLDEGVGEQDIKNAFYAYGEI 432
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BLAST of EMLSAG00000012954 vs. C. finmarchicus
Match: gi|592892693|gb|GAXK01065682.1| (TSA: Calanus finmarchicus comp5828_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 4.873e+0
Identity = 24/69 (34.78%), Postives = 33/69 (47.83%), Query Frame = 0 
Query:   49 DDDLENQ----------DP-SEIVKLEEDSFSHLVAPEDMLVVSK-----DEGVGEEIISSPHCSYEEI 101
            DD L NQ          DP +E +     +  HL APED ++ +      DEGVGE+ I +   +Y EI
Sbjct:  257 DDPLSNQNIKDRYYGVNDPVAEKLLKRASAMPHLEAPEDKMITTLYCGGLDEGVGEQDIKNAFYAYGEI 463
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BLAST of EMLSAG00000012954 vs. C. finmarchicus
Match: gi|592815980|gb|GAXK01138588.1| (TSA: Calanus finmarchicus comp102445_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 5.018e+0
Identity = 19/50 (38.00%), Postives = 26/50 (52.00%), Query Frame = 0 
Query:   35 FQENSDTSNHMSVDDDDLENQDPSEIVKLEEDSFSHLVAPEDMLVVSKDE 84
             +E  +T     VD+D LE    + +V+L   S   +VA ED LVVS  E
Sbjct:  390 MEEGGETLEVRMVDEDGLEGLGNNLVVQLRGVSLVAMVA*EDNLVVSLSE 539
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BLAST of EMLSAG00000012954 vs. C. finmarchicus
Match: gi|592815979|gb|GAXK01138589.1| (TSA: Calanus finmarchicus comp102445_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 5.916e+0
Identity = 19/50 (38.00%), Postives = 26/50 (52.00%), Query Frame = 0 
Query:   35 FQENSDTSNHMSVDDDDLENQDPSEIVKLEEDSFSHLVAPEDMLVVSKDE 84
             +E  +T     VD+D LE    + +V+L   S   +VA ED LVVS  E
Sbjct:  390 MEEGGETLEVRMVDEDGLEGLGNNLVVQLRGVSLVAMVA*EDNLVVSLSE 539
[Close]
BLAST of EMLSAG00000012954 vs. C. finmarchicus
Match: gi|592858677|gb|GAXK01098885.1| (TSA: Calanus finmarchicus comp276676_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 8.499e+0
Identity = 15/58 (25.86%), Postives = 28/58 (48.28%), Query Frame = 0 
Query:  207 HVSIQISRPSDETVLEARRLVREIEEPEQYLSALTRNLISIVKDLLPCGSGRHLTCTE 264
            H+++ +     E++++   LV  +  P+     L  +L    K+L  CG  + L CTE
Sbjct:  167 HLAVTVDDGQQESIIKPNSLVGSLTAPKNLTEVLVGDLDKSYKNLSHCGFSKILKCTE 340
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BLAST of EMLSAG00000012954 vs. L. salmonis peptides
Match: EMLSAP00000012954 (pep:novel supercontig:LSalAtl2s:LSalAtl2s98:1105047:1107802:1 gene:EMLSAG00000012954 transcript:EMLSAT00000012954 description:"augustus_masked-LSalAtl2s98-processed-gene-11.0")

HSP 1 Score: 823.543 bits (2126), Expect = 0.000e+0
Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0 
Query:    1 MPPGSPENIRKPFELRFVVSSSTMCRNDHQDILHFQENSDTSNHMSVDDDDLENQDPSEIVKLEEDSFSHLVAPEDMLVVSKDEGVGEEIISSPHCSYEEIVHRDDEMISTTGESIDENKILFILTQWTLTLQEVYQERIENENGFKSLPGTKCVCSRTSSISKELQRLQNRLSEKRYDISINKQQISLYSTEEKELNRIQTLIKAHVSIQISRPSDETVLEARRLVREIEEPEQYLSALTRNLISIVKDLLPCGSGRHLTCTEGEHFPQEGTSGVMEQDEEEDMSLLVASMSTSPSKSSXKXKQAVKTKXPPASPVTSSPSKKPRKVRSISFGGSDSTFESPSPFRVRPFYKTNNVIDILEKNKKMAKTNGLYQFVLWREALKAEKDRVVHTPSSGKSHNKRLS 405
            MPPGSPENIRKPFELRFVVSSSTMCRNDHQDILHFQENSDTSNHMSVDDDDLENQDPSEIVKLEEDSFSHLVAPEDMLVVSKDEGVGEEIISSPHCSYEEIVHRDDEMISTTGESIDENKILFILTQWTLTLQEVYQERIENENGFKSLPGTKCVCSRTSSISKELQRLQNRLSEKRYDISINKQQISLYSTEEKELNRIQTLIKAHVSIQISRPSDETVLEARRLVREIEEPEQYLSALTRNLISIVKDLLPCGSGRHLTCTEGEHFPQEGTSGVMEQDEEEDMSLLVASMSTSPSKSSXKXKQAVKTKXPPASPVTSSPSKKPRKVRSISFGGSDSTFESPSPFRVRPFYKTNNVIDILEKNKKMAKTNGLYQFVLWREALKAEKDRVVHTPSSGKSHNKRLS
Sbjct:    1 MPPGSPENIRKPFELRFVVSSSTMCRNDHQDILHFQENSDTSNHMSVDDDDLENQDPSEIVKLEEDSFSHLVAPEDMLVVSKDEGVGEEIISSPHCSYEEIVHRDDEMISTTGESIDENKILFILTQWTLTLQEVYQERIENENGFKSLPGTKCVCSRTSSISKELQRLQNRLSEKRYDISINKQQISLYSTEEKELNRIQTLIKAHVSIQISRPSDETVLEARRLVREIEEPEQYLSALTRNLISIVKDLLPCGSGRHLTCTEGEHFPQEGTSGVMEQDEEEDMSLLVASMSTSPSKSSXKXKQAVKTKXPPASPVTSSPSKKPRKVRSISFGGSDSTFESPSPFRVRPFYKTNNVIDILEKNKKMAKTNGLYQFVLWREALKAEKDRVVHTPSSGKSHNKRLS 405
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012954 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012954 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592942724|gb|GAXK01015829.1|1.006e+051.72TSA: Calanus finmarchicus comp505947_c0_seq1 trans... [more]
gi|592943958|gb|GAXK01014595.1|1.222e+072.22TSA: Calanus finmarchicus comp8811_c0_seq1 transcr... [more]
gi|592815977|gb|GAXK01138591.1|2.833e+038.00TSA: Calanus finmarchicus comp102445_c1_seq4 trans... [more]
gi|592892692|gb|GAXK01065683.1|4.387e+034.78TSA: Calanus finmarchicus comp5828_c1_seq2 transcr... [more]
gi|592892693|gb|GAXK01065682.1|4.873e+034.78TSA: Calanus finmarchicus comp5828_c1_seq1 transcr... [more]
gi|592815980|gb|GAXK01138588.1|5.018e+038.00TSA: Calanus finmarchicus comp102445_c1_seq1 trans... [more]
gi|592815979|gb|GAXK01138589.1|5.916e+038.00TSA: Calanus finmarchicus comp102445_c1_seq2 trans... [more]
gi|592858677|gb|GAXK01098885.1|8.499e+025.86TSA: Calanus finmarchicus comp276676_c1_seq1 trans... [more]
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BLAST of EMLSAG00000012954 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000129540.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s98:110504... [more]
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BLAST of EMLSAG00000012954 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012954 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012954 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012954 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s98supercontigLSalAtl2s98:1105047..1107802 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s98-processed-gene-11.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012954 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012954EMLSAT00000012954-708801Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s98:1105047..1107802+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012954-695720 ID=EMLSAG00000012954-695720|Name=EMLSAG00000012954|organism=Lepeophtheirus salmonis|type=gene|length=2756bp|location=Sequence derived from alignment at LSalAtl2s98:1105047..1107802+ (Lepeophtheirus salmonis)
TGAGACTCTGACTGTGATGAATATTGGCGCGGCTTCAGCTCACATATTTC
CTTGTTATGATTTTATTACTCAGTGTTATACATGTAGTTGTTGGAGTAGG
GGGATCGGGCCTCCTTTGCGTCAGTGATTTTATTGTTTGTTTGTGAATTC
GTTCGTTTAGTTTTCAACGTTGAAAACGAAGGATTTTCGTTCGAGTGGTG
TATGAATCCAGTATGTTCCGTTCATTTAAACGTTTTTGCATTGTATATAT
GCGTAAGGAGAGAGTACTTTGAAGGACTCTCTCTTGGGAGTGACTCATGA
CCAGTTTGAAGGAGGTTTACGATTTAAAATTAGAGTGATATTACATTTAC
TATTAAAGGTGGAAGAAGGGAATTATACCACTTGAAAAGTTACTCTTCAA
GATGGAATTAAAGGGTGAAAATCATATTGGTTCTCTAATTATTAGTAGTT
ACGAATTGTCTTTCAAATATTTTATCTTTCTGATTGCGGGAAGAAAGTTG
ATTTTTGTTGTTGTTTGCCAATAGGCAACAACCTGTTGTTCCCTGCTCAT
TTCTNCTCTTCTATTCTTCATTCTAATAGAAATACTCAAATTTCACCCCT
CCTTTGGTTTTCTCTTCGCTTTTTCCCTTCTATATAACGATGAGTACAAT
TACCAAATTTGAATTGTTAATATTCATATTTCTTTGTCTTTTACCAAATG
ATTTTTTGTTCTTTTAGTACCTACTTTTTGAATGAGCCTTTCTTTCTGAT
TGCAACATAATTTAATCCAAGTTGTTCTGACCCTTGCAACTGAATTGTTT
TTTTATTTTTTTTTAATGATAAAGAACTTAAACGGCTTCTTTGGACCGAA
ATAAAGAAAGCTCCCTCCCTATGAATAATCTCTTGCTACACTGTGAAAGC
ATTTAACTTTTTACCTGACTATTATTGCTATTTTCAATTGCTATGATGTT
GAATTGTTTAATTAACAAAGTTATTAAGATGAGATGAATGACTCGTCTAT
AATTTTTTTTTTAATAGTTGAAATGATGATGCCACTATCTTTAACATTAT
TTTAAGTTGTTGTTTTTTCTTGTTATGATTAATGTTTCAATATAATGTAA
TTGTTTGCAGTATTGAAGACATTGAAGGAGGAGTCGTCACACATGCCTCC
GGGATCTCCCGAAAATATACGAAAGCCTTTTGAGTTGAGATTTGTTGTCA
GTAGCAGCACAATGTGTAGAAACGATCATCAAGACATCCTTCACTTTCAA
GAAAACTCAGATACTTCCAATCACATGTCAGTAGATGATGATGACCTCGA
AAATCAGGTACTTGTTCCTCTATTTCTATACCTAGAATTAAGAGTCTTGT
TTTCTTAAAATGGGCATTTTTATTTATGTTTTTTTTTTGTTAAAGTCAAA
AGTGTTTGAATTATTTAACTTTTAAAAATGATTCATTCTAATTAATTGTA
TGCTCAGATCACAGTATAAAACTTTTGTGATTAAAATATTATATATATAA
AAAAAATCTGATCAAAAGACAAAATTTTATTTAATAATGAGTGTTTAGTT
GGGTAGGATTCATGAAGTTGAGACGTCACAGTACTCTACTTCTATTTTCT
ATATACATGAGACTAAATTATCTTTTATCAATTTTTTTAAAGGATCCATC
TGAAATTGTGAAATTAGAAGAAGATTCCTTCTCCCATTTGGTTGCCCCTG
AAGATATGTTGGTTGTCTCGAAAGATGAAGGGGTCGGAGAGGAAATAATA
TCCTCCCCTCATTGTTCCTATGAGGAAATAGTTCATAGAGATGATGAAAT
GATATCCACCACCGGTGAGAGTATTGATGAAAACAAAATATTATTTATAC
TGACTCAGTGGACATTAACGCTTCAAGAAGTGTACCAAGAAAGAATTGAG
AATGAAAATGGTTTCAAAAGCTTACCTGGGACAAAGTGTGTTTGTAGCAG
AACTTCCTCTATCAGCAAAGAGCTGCAACGACTCCAAAATAGACTATCAG
AAAAAAGATATGATATCTCCATTAATAAGCAGCAGATATCTCTGTATTCC
ACTGAAGAGAAGGAGCTAAATAGAATTCAAACTCTCATTAAAGCTCATGT
CTCGATTCAAGTAAGTGGTGACCTATCTCTCAAGTCAAAAAATTTGGATT
TAATTATTTTATCTTCAGATTTCTCGTCCAAGTGACGAAACCGTCCTTGA
AGCACGTCGGTTAGTTCGTGAAATTGAAGAACCTGAACAGTACTTATCTG
CTTTGACACGCAATCTCATCAGTATAGTTAAAGATTTATTACCGTGTGGA
AGTGGTCGCCATTTGACATGCACTGAAGGTGAACATTTCCCTCAAGAGGG
CACTTCAGGTGTGATGGAACAGGATGAGGAAGAAGATATGAGTCTTTTGG
TCGCTTCTATGTCAACTTCTCCATCCAAATCTTCWARAAAGARAAAACAA
GCTGTTAAAACCAAAYCCCCYCCAGCCTCACCAGTAACATCCAGTCCGTC
TAAAAAGCCGAGAAAGGTTCGGTCAATCTCTTTTGGAGGTTCTGATTCGA
CATTTGAAAGTCCATCACCATTCAGAGTTCGTCCATTTTATAAGACTAAT
AATGTCATTGACATTTTGGAAAAAAATAAGAAAATGGCTAAAACAAACGG
GTTATATCAGTTTGTACTATGGCGAGAAGCTTTAAAAGCCGAGAAAGATC
GTGTTGTTCACACMCCCTCATCAGGCAAAAGCCACAACAAACGATTGAGC
NNNTGA
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