EMLSAT00000000441, EMLSAT00000000441-696288 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000000441
Unique NameEMLSAT00000000441-696288
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAK F226+F227+F205 LsPGES2, LsPGES3, LsPGES1 both
  1. Nauplius1
  2. Copepodid
 -Missing-
-Missing- 		27.01.2016 - 14:00
04.02.2016 - 00:00
NAK F226+F227 both
  1. Nauplius1
  2. Copepodid
 -Missing-
-Missing- 		27.01.2016 - 14:00
04.02.2016 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1068supercontigLSalAtl2s1068:94054..97506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000000441 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000000441EMLSAG00000000441-683207Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000001955EMLSAE00000001955-710883Lepeophtheirus salmonisexon
EMLSAE00000001956EMLSAE00000001956-710884Lepeophtheirus salmonisexon
EMLSAE00000001957EMLSAE00000001957-710885Lepeophtheirus salmonisexon
EMLSAE00000001958EMLSAE00000001958-710886Lepeophtheirus salmonisexon
EMLSAE00000001959EMLSAE00000001959-710887Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771967auto771967Lepeophtheirus salmonispolypeptide
EMLSAP00000000441EMLSAP00000000441Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000000441

>EMLSAP00000000441 ID=EMLSAP00000000441|Name=EMLSAP00000000441|organism=Lepeophtheirus salmonis|type=polypeptide|length=162bp
MNHKLSKFLGRISSAYSPPSPLASTSPRCYASSSSPSKMSTSPRLALGGV
SVAGGLYALYNFWPTQSQSSQIVQMNPDSEPIPHILPEAPPYNDKCIKIR
YPEDKTKLKLTLYQYTTCPFCCKVRAFLDYFGISYDIVEVNSVFRKEIKW
SPNYKKVPILVI
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mRNA from alignment at LSalAtl2s1068:94054..97506+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000000441-696288 ID=EMLSAT00000000441-696288|Name=EMLSAT00000000441|organism=Lepeophtheirus salmonis|type=mRNA|length=3453bp|location=Sequence derived from alignment at LSalAtl2s1068:94054..97506+ (Lepeophtheirus salmonis)
CAATAACATAAGTCGAAGATTAATAATAATTAAAGGACCCTAGAGTCCTT
TAATAACGCAAGTACATAATATATGTTCAGCTGATTCCTGTGAAAACAGT
AGCTGGACACTTATGTAAACAAGTACGTTACAAAATTTATTTTTTTATAA
GTAATATTCTCGTGACGTCACTCTGGTTCTAGTCAGTCTCGCTACATTTT
TTTGGTGTATCGATTTATTTTTAAAAATTAGAAATAAATATTATTTTGGA
TTATCAAATAAACAGCCGGATAAAGTAAGGAAATTCTAACTTCTGCATAT
AATTATTTCTACAATTTAATTAACAGTATTTTATTTATTTTAGTGGATAA
TTTATGGTAATGAGGCTTACATAATCAGTTGAATGAAATTAAGTACAACT
ATTATTACATAAGCAGTAAAAAGAAGTAATGAATCACAAGCTATCCAAAT
TTCTTGGTCGGATATCCTCCGCATACTCGCCGCCATCACCGCTTGCTTCA
ACATCCCCCAGATGCTATGCATCTTCCTCTTCGCCATCGAAAATGAGTAC
CTCACCTCGACTAGCCCTTGGGGGTGTGAGTGTTGCGGGAGGACTCTATG
CTCTATACAACTTTTGGCCAACTCAAAGTCAATCATCACAGATCGTTCAA
ATGAATCCTGACTCAGAGCCTATCCCTCATATCCTGCCGGAGGCTCCTCC
CTATAATGATAAATGTATAAAGATTCGCTATCCGGAGGATAAAACAAAAT
TAAAGCTCACATTATATCAAGTGAATTTAGTTTGGAGAAATTAGACTAAT
TAATTATATAATGAATATCCTTCTTTCAGTATACAACATGCCCATTCTGC
TGTAAAGTGAGGGCTTTTCTGGATTACTTTGGCATCAGCTATGATATTGT
AGAGGTGAATTCCGTTTTTAGAAAAGAGATTAAATGGTCACCTAACTATA
AAAAGGTTCCTATTTTAGTGGTAAAAACTCCACAAGGGGACTTTTTGCAG
CTCAATGATTCAACTATGATTATTTCTGCACTTATGACCTATTTGAAGGA
GCCTTCTAAAAGTAAGTAAAAAGATATACTGGGATCAAATGAGTATACAC
ATTTCATTACTTTTCCCTTTCAAAAATGTATATCATTTACATTTAAATGT
AGACCACAGTATGGGCCATTAAACTGTATAAATTTCATTCAATTTATTTA
CTACTAGATGAATGACTAAGTGTATACCTCATTCAACGACAGAGATGTCA
TTTTGACGTATAAAATTACCGAATTTATTATTGCCAAATCGAGGAAGTTA
TAAAACACTTGTATTGGCCAAAGTCACAAACTAACTTTAGTAMTATATAG
CCTAGCCATTGTTATTTACTACATTTTTTGTTATATTATAATATATTAAT
AAGTCATGTAATTTCTTAATCATATTGTCAATTTGTAAGTTTCTGTGAAT
AGTGTGTGAATTTATGGATTTTAAAAAGGTTTTCTTTGATGAACTGTAGG
AGTCATGTCTTCTTCTTTTTTTTGATTTTTTTAACCTCTCCGTATCTTCA
AGCAGAATTGTGCATTGTAACTCATTGATAAACCTAGCCATATAATTTTG
AGTATTAATAAGTCTAATAGTTTCAATATATTAAATCAAATTTGTGGCTT
ATATTTAAAAATCAAAATTGTGAATGGGTTAAAAGAACATCTTAGCCTTT
CTAGTGTTAAGGGATTCTATGTTTTTGGGGGGCAATTTATGCTTTAAAAA
AGATACAAGGAAAAAAACATTCAAATTAAAGTTCCTGGAGCTTAAATAAA
TAAAATAAAAAATATATGGTTAACTTTTTATATTAAAATAGATGAAATAA
TAACTCTTTTTTTTAAATAAACTTATATAGGAAAGGGTAAATTTAAAGAT
AATTAACTTTAGTATAAATATAAAGCAAAGATTTTTTAGATGAAGATAAA
CTATAATTTTGTTTTTAATTCATTATTCATTTTTTGTAGTAGTCAACGAA
AAACTGTAGTAGAACCATTTCATCCCAGGGTTGCACACTGACTTTTTGCA
TTTAATTGTAATTTTCAAGGTTTTATTTCTTCTTAAATGAATGCTGCCTG
GGTGGATATCTTAAGACCTGTAATGCTATCAAGCAAACATGAAACATTTT
AAAAGTTTACACAATTTCTTTGGATAAATCTCTAACCCAAAAGTTAGCCN
GCCTAGGGTGGATATCTTAAGACCTGTAATGCTATCAAGCAAACATGAAA
CATTTTAAAAGTTTACACAATTTCTTTGGATAAATCTCTAACCCAAAAGT
TAGCCCGTTTAACCCCATCGTGCCCTACSTAMTMACTTCKTATAGYATAC
RTTGTTTAATATTCAAAAATTTCATTTTCTTCGTGGTTTTTTTTTTTCAG
ATCTGAAAGATATAGTCGAATGCTATCCACAAGTTACAAATACTGACCCA
AGTAGTGGTAAATCCACTATTGAAATTCGCAATAAGTATTTTATTATGCA
TCAAAATGACTCTGTTAATGATAAAAATCTGAAAGAAGAACTAAAGTGGA
GAAAATGGGTTGATAGTGTTTTGTACATCGTATTAGCCCCAACGTGTATC
GAAGTTTATCCGAGTCCATAGAGGCATTTCATTGGTTTGACACTGCGGGT
AATTGGAAGAATGTTTTTAATACATTTGAACGTCAAGTTGTTATATACTT
GGGAGCTTCCGTTATGTGGATTCTGGGAAAAGTGCTTAAGAAAAGACATG
GMCTTCCGGATGACGTGAGGGAAGCCATATATCACGAAGTGAATAACTAT
CTATCTCATGTGAAGAAAAAAGGTGGATCATTTGGTGGCGGAGAAGTCCC
GGATTTAGCGGATATTTCTTTTTACGGTACTTTAAACTCATTTGAGGGAT
GCGCTGCCTTTCAAGATGTACTAAGTCATACTGAACTTAGACAATGGTTT
ACGAAGATGAAATGGGCTGTGAGCTCTCGAGCTGGCGGKTCTAGTATTTA
ATTCATTATAATTAGACAAATTGTATGTATCATACAGTTTTTATTTGGGT
AAATGCACATTTGAGCAATAAAATAGTTAACGATGGGACTTTTCACCACA
GTCCTTTATTTCTTTAAGTGAATGTCTGACCAATGTTTTAGCAGACTTTA
TCACATTTTGATGTTTCTGATTTGTGATAAAACATAATATTTTACCTATT
TTAAGTAGTAAAGTATTATTTCATAAGTTAAGTTATAACTGCATAGATGA
AATAAAATTGCGCTCATCTGTTAATTTCATATTTGGATAATGTATTACGT
ATGATTTTCTAGTCAATTATAATTGAATTATTAAAACATGGTTTTACCGT
TTAATCGACAATTGGTTAATTCACAAATTTCTTGTCTCATTATGAAAATG
TATATAATAAGTGCATAATCTCATTATTTTCCAATAGATTGATACTTTCC
CAG
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