EMLSAT00000000523, EMLSAT00000000523-696370 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000000523
Unique Name	EMLSAT00000000523-696370
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1081	supercontig	LSalAtl2s1081:173370..176201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000000523 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000000523	EMLSAG00000000523-683289	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000002262	EMLSAE00000002262-711190	Lepeophtheirus salmonis	exon
EMLSAE00000002263	EMLSAE00000002263-711191	Lepeophtheirus salmonis	exon
EMLSAE00000002264	EMLSAE00000002264-711192	Lepeophtheirus salmonis	exon
EMLSAE00000002265	EMLSAE00000002265-711193	Lepeophtheirus salmonis	exon
EMLSAE00000002266	EMLSAE00000002266-711194	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto773860	auto773860	Lepeophtheirus salmonis	polypeptide
EMLSAP00000000523	EMLSAP00000000523	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1081:173370..176201+

protein sequence of EMLSAP00000000523

>EMLSAP00000000523 ID=EMLSAP00000000523|Name=EMLSAP00000000523|organism=Lepeophtheirus salmonis|type=polypeptide|length=649bp
MSKSSPMEIVNMMRASPSSVDNAYGRXXGASSSRSXDLSSQEAIESLLLL
GQEPILAPKKLELDSLEFSPSSCSITGADGISYYQRMRIRNNEASKRCRL
KRRLKAEQLESQNNLLTMSNKLLKQRILRLNKICHLLKDCVNDFKEDEEG
EEEEAEEANPSKCSCFETVXAIKKFNRDTPDSTSLSNEELLAKSKLDREL
EDMSEFYLDLDGRPSSSSDDEKKPKLTRSLSCQPVLNRTSLDAINETIVK
TLKTPLVTLALTSAATRIQNSKPLSTNPPPGLISVTSPTVQNPKPAMSVS
VKSPPSVITNNLQVIPPQLVFVTTKSPPPKTKEILIKCEPDLRVVEEVVE
TTAVPPPPLLTPSNSCLVMTTSNDNPYKEKPCGNELHSINKLTGYLDLTM
RTFSRDDGTSAAERVIIKSALGLPFWQADELPSFICDNHRQEISFQTEHL
SCVICGKKKKKPFSTPMSIITYRMSLEHHMNTGKILAIGQLICSICKDRY
LKMEATLLNYSTNNQLKISSNLADTVPQIMGLRQNNTVIINKQKDVKVIV
QPVPRITNFNSSTANSQLVSICNSSNSANEIVSSPTTSLVPTSCSNDNIF
HKISRLNDALQAVNPRYRPIGFSITSIESCXPSVLQDAVXATDTAISTL

mRNA from alignment at LSalAtl2s1081:173370..176201+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000000523-696370 ID=EMLSAT00000000523-696370|Name=EMLSAT00000000523|organism=Lepeophtheirus salmonis|type=mRNA|length=2832bp|location=Sequence derived from alignment at LSalAtl2s1081:173370..176201+ (Lepeophtheirus salmonis)
TCATATTACTCCCTACTACTGTAGTAATATAGTAATAATAATAATAAGCC
GGAAAAGTTTGGCCCATTTTTTCCCGCCCGGCTTCATTTCATCACTTTGC
GTGATATTGTGAAACAAAAAGAAGCAGAAAGACACAGACAAAAAAAGAGG
AAAAAGAGAACAAAAAAGGGAAAAAGAAGTCGGATGACGCATCCCCTTTT
TGAATTAATTCACTGTAGGAGCAAGGAGATATTTGGAGCCTCTTTCGAAC
AAGTGATTTTTTTTCTTGGTGTCGGAGCTTTGTATCTATCTGGATCCTTT
GAAGGATTGGTTGCCCATATAGGATTGAGGAGGAAATTGTGTGTCTAGGT
ACGTATGACTGAGTCGGGTCGCCATTTTGGATTATTGCGCGATAGTTAAA
AGGAGGGAGAGAGAAGAAGAAGAAGGGAGAAAGAGAGAATGGATGGAGGG
GAAGGAGAAAGAGGGAGTGAGAGTGAGTTGGAGAAGTCGTTTGAAGGGAA
TGGTTCAATGTCTGTGCAGTGTATATGTTACAACTTACATGTATTTTCTA
TTAACTCATATACACACGAAAAAGTGTGTTAGCTCTGATGTGTTGCATAA
TTATTTCATTTTCAGACTTTTTTCCTAATTTGAAAGGAGTGAGCTTGGAG
TAGGAAATGAGCAAGTCTTCTCCCATGGAAATAGTGAACATGATGAGGGC
GTCTCCTTCCTCAGTGGATAATGCTTATGGAAGGRGNGANGGAGCCTCCT
CTTCTCGCTCTCMAGACCTGTCCTCTCAAGAAGCCATCGAGAGTCTCCTT
CTCTTGGGACAAGAACCCATTCTTGCGCCGAAGAAGCTGGAGCTGGATTC
TTTGGAGTTTTCTCCTTCATCTTGCTCCATTACGGGAGCGGATGGGATTT
CCTATTATCAGAGAATGCGGATACGGAATAATGAAGCCTCCAAACGATGC
CGTCTAAAAAGAAGACTCAAAGCGGAGCAATTAGAGAGTCAAAACAATCT
CCTCACCATGTCCAACAAACTTCTCAAACAAAGAATCCTCCGACTTAACA
AAATATGTCATCTCCTCAAGGACTGTGTCAATGATTTCAAAGAAGACGAA
GAGGGTGAGGAGGAGGAGGCGGAGGAGGCCAACCCTAGCAAATGCTCCTG
CTTTGAAACCGTTSCAGCCATTAAGAAATTCAATCGAGACACGCCTGACT
CAACCTCTCTGAGTAATGAGGAACTACTAGCAAAATCCAAACTCGATAGA
GAATTGGAAGATATGTCTGAATTTTATTTGGATTTGGATGGACGTCCAAG
TAGCAGTTCGGATGATGAGAAGAAGCCTAAATTGACTCGCTCTCTCTCTT
GTCAGCCAGTCCTAAATCGTACCTCTCTTGATGCTATTAATGAAACCATT
GTTAAAACACTCAAAACTCCTCTTGTGACACTTGCATTAACCTCAGCAGC
AACCCGGATTCAGAATTCGAAGCCTTTGTCCACTAATCCGCCGCCTGGTC
TCATTTCTGTCACCAGTCCTACGGTTCAAAATCCAAAGCCGGCTATGAGT
GTGAGTGTTAAGAGTCCACCCAGCGTCATCACCAATAATTTACAGGTCAT
TCCACCCCAACTTGTTTTTGTCACGACGAAGTCTCCACCTCCTAAAACTA
AAGAAATACTAATTAAATGTGAGCCAGATCTGAGAGTCGTTGAAGAAGTT
GTTGAAACTACAGCTGTACCMCCGCCGCCACTGCTAACACCCTCTAATTC
ATGCCTTGTAATGACTACCTCCAATGATAATCCATATAAAGAAAAACCTT
GTGGTAATGAGCTACATAGTATCAATAAGTTAACTGGTTATTTAGATTTA
ACTATGCGAACTTTTTCTCGGGATGATGGAACGTCTGCTGCTGAAAGGGT
CATCATTAAAAGTGCATTAGGACTTCCCTTTTGGCAAGCTGATGAGGTAG
GATGATGCTTGATTTCAGTTGTAGCTCATATAGGTTTAATAATTCCCTCC
CATTTAATATAATTCTAATTCTTTTATTGATATATAGCTACCATCGTTCA
TTTGTGATAATCACCGTCAAGAAATCTCATTTCAAACCGAACATTTATCT
TGTGTCATTTGTGGAAAAAAGAAGAAAAAACCATTTTCAACTCCTATGTC
CATCATCACATACAGGTTGGTCTTGTTATTCCACTAAGTCATTTCTAAAG
AATATTAAAACAAATTTTTTTCTGTTACAGAATGTCTCTCGAGCATCATA
TGAATACTGGTAAAATATTAGCTATTGGACAGCTTATTTGTTCTATTTGT
AAGGATCGTTATTTAAAGATGGAGGCTACGTTGTTAAACTATTCTACAAA
TAATCAACTTAAAATTTCGTCCAATCTCGCCGATACTGTCCCTCAAATCA
TGGGGTTGCGACAAAATAACACAGTTATCATTAATAAGCAAAAAGACGTT
AAAGTAATTGTTCAACCTGTTCCGAGAATTACAAATTTTAATTCAAGTGA
GTGTACTTTTAACCCAATATGTGTATAATTAATTCATTAAATTTTTACCA
CATTTATGTACATATTTAGGTACAGCTAATAGTCAACTGGTATCTATATG
CAATTCAAGTAATTCAGCCAATGAAATAGTCTCCTCGCCAACCACATCTT
TAGTACCTACTTCTTGTAGCAATGATAATATCTTTCATAAAATAAGTAGA
CTGAATGATGCTCTGCAAGCTGTTAATCCTCGATATAGACCCATTGGTTT
CTCAATAACATCTATAGAGTCATGCYCCCCATCTGTGTTGCAGGATGCAG
TTSCAGCCACAGATACTGCCATATCGACTCTT

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