EMLSAT00000000621, EMLSAT00000000621-696468 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000000621
Unique Name	EMLSAT00000000621-696468
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s109	supercontig	LSalAtl2s109:661702..667494 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000000621 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000000621	EMLSAG00000000621-683387	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000002697	EMLSAE00000002697-711625	Lepeophtheirus salmonis	exon
EMLSAE00000002698	EMLSAE00000002698-711626	Lepeophtheirus salmonis	exon
EMLSAE00000002699	EMLSAE00000002699-711627	Lepeophtheirus salmonis	exon
EMLSAE00000002700	EMLSAE00000002700-711628	Lepeophtheirus salmonis	exon
EMLSAE00000002701	EMLSAE00000002701-711629	Lepeophtheirus salmonis	exon
EMLSAE00000002702	EMLSAE00000002702-711630	Lepeophtheirus salmonis	exon
EMLSAE00000002703	EMLSAE00000002703-711631	Lepeophtheirus salmonis	exon
EMLSAE00000002704	EMLSAE00000002704-711632	Lepeophtheirus salmonis	exon
EMLSAE00000002705	EMLSAE00000002705-711633	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto779192	auto779192	Lepeophtheirus salmonis	polypeptide
EMLSAP00000000621	EMLSAP00000000621	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s109:661702..667494+

protein sequence of EMLSAP00000000621

>EMLSAP00000000621 ID=EMLSAP00000000621|Name=EMLSAP00000000621|organism=Lepeophtheirus salmonis|type=polypeptide|length=771bp
MKVKRQRRVRRILNYFRTHFGLKAPYRVLLDGTFCQSCLTAKVNIKEQIP
NYLLVPEVRYCTSPCAITETDKLGPQLYGASLILKGLAASYLLECSHGKE
PLPAVKCIKSILKDNNSSSSIIVATQDPELRERVRKIPGVPLIYLHGNAP
TLEEPSAYTKSFVTKGKNEVSHEEKVILELKEKEFGSQESVIHKKKKRKG
VNPLSCLKSKKKTPVTPVKTIKKKRRTELYCHSFVSHSCGRMRVARRNNN
MINSLLEREYALQSPEEFVRQNQITDCSIKRLGQFHLLEGHRGCVNCIQW
NSTGEILASGSDDLNVIIWDPERGVKKTSFLTEHNGNIFSVKFLPFSGDR
ILATGAGDNHINVFDIDKSKTLHNFSNHSRRVKRLEVIPDSPDTFLSASE
DGTVMLFDIRAPVKPHQSNIIVNLKSSIGRKAEAKCLAINPVLPELLAVG
ANDPFVRVYDRRMIKPQVIEFPSSVSRDRLHYLNKSVPNTAVKEGCVQYY
SPGSNLENKASSTALILTDEIDKLKSAANIEFQNQNYVKAIKIYNLALCK
HPHSVLYGNRAAAFMKRKWNGDYYAALRDCYNALKLDPNYVKAHYRLTKC
LLELSWINEARESLNSFRKNHSDHTDTLQFKNLVKAFEEATLNGKKDNET
LSVISDNSSEGGFELLEDEENLRTNASDFKKRFCGHCNTSTDIKEASFYG
QAGQFIIAGSDNRRFFCWDKKTSNVCRMMIGDESVVNCVQSHPSTSLLAT
SGLDFHVKIWAPLSEXKCNLV

mRNA from alignment at LSalAtl2s109:661702..667494+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000000621-696468 ID=EMLSAT00000000621-696468|Name=EMLSAT00000000621|organism=Lepeophtheirus salmonis|type=mRNA|length=5793bp|location=Sequence derived from alignment at LSalAtl2s109:661702..667494+ (Lepeophtheirus salmonis)
CATTCATCACGTGGTCGGACAACGGCGAATTCGACTAATCCACTAGTAGT
AATAATTAATAAAATAAGTAATAATTATTATTGAAAATTAATCGACAATC
ATGAAGGTTAAAAGACAGAGACGAGTTCGGCGGATTTTAAATTATTTTAG
GACTCATTTTGGCTTAAAAGCTCCTTATAGAGTTTTGTTAGATGGAACAT
TTTGTCAAAGCTGCTTAACGGCCAAAGTAAACATCAAGGAACAGATTCCC
AACTACTTACTAGTACCAGAAGTGAGATATTGCACGGTATGTCGTATTAT
TTGCCTTTTGTAACAACTTTATTCTAATTATATACTCTACTTGTCTTATA
TTATATTTCAGAGTCCTTGCGCCATTACGGAAACAGATAAACTTGGTCCT
CAGCTCTATGGCGCATCTCTTATATTAAAAGGCCTAGCCGCATCTTACCT
ACTAGAGTGTAGTCATGGTAAAGAGCCTCTTCCTGCTGTTAAATGCATAA
AGTCCATCTTGAAAGACAACAATTCCTCCTCATCTATTATTGTGGCTACA
CAAGATCCTGAACTCCGTGAACGTGTCCGTAAAATCCCAGGTGTACCCTT
AATCTACCTTCATGGAAACGCTCCAACTTTAGAAGAGCCTTCTGCATACA
CCAAATCATTCGTGACTAAAGGAAAAAATGAAGTTAGCCATGAGGAAAAA
GTGATTTTAGAACTCAAAGAAAAAGAATTTGGCTCTCAGGAATCTGTGAT
CCATAAGAAAAAGAAAAGGAAGGGTGTGAATCCATTGTCTTGTCTCAAGT
CGAAAAAAAAGACTCCGGTGACTCCTGTAAAAACCATCAAAAAGAAGCGG
TTAAGAAATCGAAAGCATAAAACCCTATCAACTCAACCAAAGGATTCAGA
CTAATAATTTATATTCAATATGTATGTATACAAAATTTATGAGGACCAAT
ATACTGCCTTGTTCTGGCGAAACACACTAACTGACACATTTTTGAAAAGT
AACTTTTTTAGGTTGTTGGGATTCTCTGAAATTCAAATGTATTGTGAAAT
TTTCTACAAAATCATCCTATCAGAAGAATTTTTTTTCTCTTTTGAGGCAG
GCAGAACACACTAACTCACGGGTATGGTTAGTGACTTGTTCGTTTTGATA
GGKGAATAAMAGCAAAATAATCGATTATAGCTTATAAATGTTGTGCACAT
TGCATTGTTGGATGTAAAATCACCTTTATCATCATTTATGAAAATGGAAG
TTATTACTTATTTGTGAGGTCTGGCTAAACAGGACACTATACTCGTACGT
AGTTTTTTATTAAATAGATGTATCTCGGTAGTTCGTTGACTGAACATTCA
AATGCTTTCCGTTGATCCCTAATACAAATATATTTCTTCTGCCACCTTTA
AAAACGTTTTTACTGACGTAAAAAAACATCATGTCAAAGATTTGTCATAA
AGATCCCTCCCCAAGAAAAATTATATTCAAAGCCTTGTCTAGAGACCAGA
AAAAAGAACAATATAATGTTTTGTTTTTTATTACGAATGTCAAAAGATAC
GTCTTGGTTTAAGTGTTTAGAAATTCATGGTTTAGCATTGTTAAGACGTT
TGATTCTTTTTTATGACATATTCTTAGTTCATTTTCTTATAATTATTAGT
CCTTCAAAGTTATAGCTGTAGAGAGATCATTTAGAAGCTGGATAGTTTAA
AAGGATTGCTTGTGTCAATAAATACATTTAAGCCTAATTACATTATGTTA
TAGAATGGACCACCTATAAATAAATCCTGTAATAAAGGAATCATTTTTAT
ATTAAAGGAAGAAATGTCAATCAATTTGTATACGTAGTTTCATCGACAGA
TATTATGCAGTTGTAACTTTGCTTTGTTTGAAAGATAAGGTCAATAAGTC
ATCATAGTGCATATAGATGCTTAATAAAGAAACAAGAATATTATATATTT
AATATTTGTGAAGTGAGTTTACACCTAGAATATTAATTGTAATAGGTCCA
TCATCATAAAAACAATCTTGAACAAAAATCAAGAAAAGAAGGCCAATATT
TCATAGACATATTTGAGTCAATAATATTTATAGGGTTTGTATTCAAATTA
TTGGGATGATATAAGATACCCAACAATCTAAGCTATAATTTAGAGCCTTT
ATTTGATTTAAGAGACTTAATTTGGCTACGATATGGCCCCTTTCAAACAT
AAATATATCATTTTTTTATTATTCTATTGTCACGCTCTATTTTGTCTACT
TTAACTGTAAAATTTGTGATGTACTCAAAGGGTTAATAAGAATAATTTGT
TGATAGAAATTGATTGATTTCTAGACTCAATTTTGATAAAATCCTTCTAG
TTTGCTTTTGGGTTGACGGGCTACACATTGTAACGAATACTTATGGTCAG
CAGCTGTTTTGTTCATAAATATTCGGATTGACAGACAGATAAATAAGAAT
AAGTTAATATATATTAAATAAGACGAACGGAGTTGTATTGTCACTCATTC
GTATCTCATTCATGCGGAAGGATGCGGGTTGCTCGTCGGAATAATAATAT
GATAAATAGTTTGTTAGAGCGTGAATATGCTCTACAAAGTCCGGAAGAGT
TTGTTAGACAAAATCAAATAACGGATTGCTCAATAAAAAGACTTGGTCAA
TTCCATTTATTGGAAGGGCATAGAGGCTGTGTCAATTGCATTCAATGGAA
CTCCACAGGAGAAATTTTAGCTTCGGGATCTGATGATTTGAATGTTATTA
TTTGGGATCCAGAACGAGGCGTAAAGAAAACTTCTTTCTTGGTATTGAGT
CATATTTATAATTTAATTATATAATTAATACTCAAAAAAAAAAAATATAT
ATATTATGATTTATGGAGCATTGAATATCTCAATGATCCATAATGAAATT
ATAATTACTTAATTCAAATATTAGTAGAGTAATATACAGTTAATAACAAT
TAACTATTGTCTTTCATGATCTTTCAAGACAGAACATAATGGTAACATAT
TTAGCGTCAAGTTTCTTCCGTTTTCTGGAGATCGAATCCTTGCAACTGGT
GCTGGAGATAATCATATAAATGTATTCGACATAGATAAATCAAAGACTCT
ACATAATTTTTCTAATCATTCACGTCGAGTAAAAAGACTAGAAGTCATCC
CTGATTCACCAGATACCTTTCTCTCGGCCTCAGAAGATGGTACAGTTATG
TTATTTGATATTAGAGCACCTGTAAAACCTCATCAAAGTAACATCATTGT
CAATCTAAAGAGTAGCATCGGTAGAAAGGCTGAAGCCAAGTGTTTGGCAA
TCAATCCTGTTCTTCCAGAGTTGCTAGCAGTTGGAGCTAATGATCCCTTT
GTAAGAGTCTATGATAGACGTATGATAAAGCCACAAGTTATTGAGGTAAT
CATTATATGCTGTATTATTTTTCTTTTCATTATGATAAACAACTTTTCAG
TTATAAATGTTCAATTTAAATGTTAATTCTTAATTCATTTCTAAGTTTCC
AAGCTCTGTTTCAAGAGATCGTTTGCATTACTTAAACAAAAGTGTACCTA
ATACAGCTGTAAAGGAAGGCTGTGTACAATATTACTCACCAGGTATTTAC
TGTTGCAGTTACTAATGATAAAACTCTATTATTGTCTACTCTTGTTTATA
ATTAATTATTAATGTAGGACATTTTTCATCAATTGATAAATTGAATGATA
CGTGCCATGGTTTTTTGTCTTCAACATATGTTACATTCTCTCCTGATGGA
AGAGAATTGCTTGTCAATCTCGGATGGGAACATATTTATCTCTTTGACGT
CAAGTCACCTCAGTCTAGGCCCATATTTAGATCCTTTGACTGTGATACTA
AATTTTCATCCTGTAAGAAGATGAGTTAATTTTACTGTATAGCAGGGGTC
ACCAGCCTTTTTTGTGCCATGGACCGGTTTTATCATTAAAAAAAAAATGT
GGACCAGTATTCATTTTATCTGTATGAATCATTAATGATGCAATTGTCAT
ATTTCAAATTTAGGGCCATCCACTCCATGGCCCCAATTTTTTTTAAAGTT
TATATTATATGTATTTAATAGAAAAGATTTAAATATATTCTCCCCATATC
TAACACACACTGTATGGCCGGTCCTGAAATGCAAATCTGAATTTATTAAT
TGGGCAGTAGTTTTTTAGTTATTTTGGATAGAAATAACTTTTAAATTTCG
ACAGATAATATATTAAAAAATGAAAATAATTCAAATGTTTTTCACGGCTC
SGYACCYAATGACTTKCGACTTGATGGTTGGGTACCCCTCCTGTATAGTA
TCTATTTTTATTCTCAATACCCATACCTAATATTTTTTCTACTAAGGTTC
TAATTTAGAAAATAAAGCTTCTTCCACAGCTTTAATTCTGACAGATGAAA
TTGATAAATTAAAGAGCGCTGTAAGTGTGATTGCATCCAGAATATTGATA
AAAATGGATGAATTAATACTTTTCTTTACCTTACGTGCACATTCGTACAC
CTTAGGCGAATATAGAATTTCAAAACCAGAATTACGTTAAGGCAATCAAA
ATCTACAACCTGGCCCTATGTAAACATCCACATTCCGTTTTATATGGGAA
TCGGGCTGCCGCTTTTATGAAGCGAAAATGGAATGGAGATTATTACGCTG
CACTAAGAGACTGCTACAATGCATTGAAATTGGATCCAAATTATGTTAAA
GCGCATTACAGGTTAACAATGAATCCCTATGTATGATTTTAGAAATACTC
TACAGATATTAAATCTCTTCTCCAGGCTCACCAAATGTTTATTGGAGCTA
TCTTGGATTAATGAAGCAAGAGAATCTTTAAACTCATTTCGTAAAAACCA
TTCAGATCATACAGATACTCTACAATTTAAAAATCTCGTCAAAGCATTTG
AAGAAGCTACGTTAAATGGTAAAAAAGACAACGAAACATTATCCGTGATT
TCCGACAATAGTTCTGAGGGTAACTTATAATTATAATATTCTAATTCATT
TATAATCTGTTTATCTAATTGTAGGTGGATTTGAGCTATTAGAAGATGAA
GAGAATCTTCGTACAAACGCAAGTGATTTCAAGAAAAGATTTTGTGGTCA
CTGCAACACTTCTACAGATATTAAAGAAGCCAGCTTTTATGGCCAAGCAG
GTCAATTCATCATAGCTGGATCAGACAATCGTAGATTTTTTTGTTGGGAT
AAAAAGACTTCTAATGTATGCAGAATGATGATTGGTGATGAATCCGTGGT
TAACTGTGTACAAAGTCACCCTTCTACATCTCTTTTAGCTACTAGTGGAT
TGGACTTCCATGTAAAGATTTGGGCACCCTTATCGGAGGKAAAATGTAAT
CTTGTATAATCATACCCGGTTTTAGGGGGAAAGAATTTGTAGATTTAATT
GGTATCTTTTCCCTATCCCCACTCACGCTAAAACCGACCCTGTGTATAAT
ATTTATGTACTTCTTCTATCTTTCCCGTGATCTATGTATGTAGAACAACG
AAAACCTTGAAGATTCCGAAGTGATTGATGATTTAGATCAAATTATGACT
GCGAATCAGAATAGAAATATTTATAGACCTGAAAACACGTTGGAGGTGAT
GTACGAAAATGAAGATAGGCTTCAAGTCATGTGCACACCAAGTTAATTTA
TTGTATACTTCTTCTCCTTGGAATGAATACTAATATATATATTGTGGTTA
AGTTCTCGTTAATTATAGATAATAATTATATGTTTAAGTATATTACAAGT
TATTGAAATATAATATTTTTATATCTCGAAATTCCTGAACAAA

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