EMLSAT00000001710, EMLSAT00000001710-697557 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000001710
Unique Name	EMLSAT00000001710-697557
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1296	supercontig	LSalAtl2s1296:53657..58587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000001710 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000001710	EMLSAG00000001710-684476	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000007549	EMLSAE00000007549-716477	Lepeophtheirus salmonis	exon
EMLSAE00000007550	EMLSAE00000007550-716478	Lepeophtheirus salmonis	exon
EMLSAE00000007551	EMLSAE00000007551-716479	Lepeophtheirus salmonis	exon
EMLSAE00000007552	EMLSAE00000007552-716480	Lepeophtheirus salmonis	exon
EMLSAE00000007553	EMLSAE00000007553-716481	Lepeophtheirus salmonis	exon
EMLSAE00000007554	EMLSAE00000007554-716482	Lepeophtheirus salmonis	exon
EMLSAE00000007555	EMLSAE00000007555-716483	Lepeophtheirus salmonis	exon
EMLSAE00000007556	EMLSAE00000007556-716484	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto770788	auto770788	Lepeophtheirus salmonis	polypeptide
EMLSAP00000001710	EMLSAP00000001710	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1296:53657..58587+

protein sequence of EMLSAP00000001710

>EMLSAP00000001710 ID=EMLSAP00000001710|Name=EMLSAP00000001710|organism=Lepeophtheirus salmonis|type=polypeptide|length=627bp
MGGALSHFFQSGHALLSYSHNRAVSEQTRRNIRIVFDALRANPKVTVQRL
DGLLSTIPRSENILQIHNEEGYNLLQKCVGINNLEMIRWCLSRNIDINRG
ACSLPLHIACLKGYEDAVELLLKHGARVDVEARMCWPGHHQQNCEERGKH
STRAKDDHFYRSSDKLQCAIYYAIDGDQVDILELLAQQGEDHWLPWQQKR
PLLHIACERGAWNCVKYLVSERSDEINQCYDEYXPIHQASLHDIKFLELL
IQCGAETTVRTPTQLMTALHVVLLQGKKTAEDTLQTTKLLMEHGLRDLIN
EADSLGNTPLHVLIVRYALEERRYGXHDDHQPWNKWDMLHIVRYLLQXGA
RPSINHTSNSALACVLRHVTDWEFRYDLLHMLLQEGGDPNVEGRDGSVPL
MVCLVPLINKDPLHHFNHTMKVCYLNCVRILCQFGGNPNCSTRSNLTPLH
VLMFTASENISLAREDEKSSGFEFIRNLLTVLLQHGLDPNVRFSQRSNHI
LYSLMDMVKNARMIPNLPLRLYPLFEICDAASVSLKLKREHGHRVNIFAL
WSATIFNCHAGNLLTHILLGKPTINAFSNVEYIALVTLVFVSILLCPKNM
IDTLLQVTPIHGSMKAKKNIQGLYGPA

mRNA from alignment at LSalAtl2s1296:53657..58587+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000001710-697557 ID=EMLSAT00000001710-697557|Name=EMLSAT00000001710|organism=Lepeophtheirus salmonis|type=mRNA|length=4931bp|location=Sequence derived from alignment at LSalAtl2s1296:53657..58587+ (Lepeophtheirus salmonis)
GTTGATGAGGACTGTTGAATGATAAGGTAGTAATTAGAATTGCACTACTA
AAATTTAGTGATTCTCTCCCTTTCTCTCTTCTTTCCCCTTTCTCTTTCTT
TCTTCCTTTTTCTCTTTCTCTCTCCCTTTCTAGCTCTACTTCTCTTCTCG
TGAAATATAAAACATTTGACGTGGTGTTGTGTCAGATCAAAATCTTGGAC
TTAAGATTTGCTAGCTGTGATTTTGTTGGTGAAAAGGATGTACGAAGATG
ATGGGTGTGCCGGAAGGAGGATCGTGGAAGTCTGAGGGCCCAAGGGATGA
TAGGATGGGAGTGAATGAGAGTATTGAATGATTATGAATGAGCCCGGATG
GGCCTTTCCTCCCCAGAGTTGTCGTAGTCGCCGTGTGGAGAGTGGAGGAG
GTGAGTAAGTAGTGCCAGAAGTAGTTGTCGAAAGTGAGACTTGTGTGGGC
CTGAGGAGAAGATGGGAAGATGAAGACTTGGGAATAATGGGTGGAGCCCT
GTCCCACTTTTTCCAGTCKGGGCATGCCTTGCTCTCCTACAGYCACAACC
GAGCCGTGTCCGAGCAAACAAGGAGAAACATCCGAATCGTGTTTGACGCC
CTTCGAGCCAATCCCAAAGTGACGGTTCAAAGACTAGATGGCCTTCTGTC
CACCATTCCGCGCAGTGAAAACATTTTGCAAATTCACAATGAAGAAGGCT
ACAACCTTCTTCAAAAGTGCGTGGGCATCAACAACTTGGAGATGATCCGA
TGGTGTCTCTCCAGGAACATTGATATCAACAGAGGCGCCTGCTCACTCCC
TCTACACATTGCCTGCCTAAAGGGGTAAGTCAGCAAGTCTGGGGGCTCCT
TGTCCAACACTTATTATTGTGTACATATTCAAGGTATGAAGATGCAGTTG
AGCTTTTATTGAAACACGGAGCTCGCGTGGACGTGGAAGCCCGAATGTGT
TGGCCTGGACATCATCAACAAAACTGTGAGGAACGTGGAAAACATTCTAC
TCGAGCTAAGGATGATCATTTCTATAGATCCTCGGATAAACTTCAATGTG
CAATCTATTACGCTATAGATGGGGATCAGGTCTGTGGATGGCTTGATTTT
GAATACGGATTTTATTCAGAAATATACTAATACTTATTTTTGATTTTAAG
GTTGATATTTTAGAACTTCTTGCGCAACAAGGGGAAGATCACTGGCTCCC
GTGGCAACAGAAAAGGCCTCTTCTTCATATAGCATGTGAAAGGGGAGCCT
GGAACTGTGTAAAGTATCTAGTCTCTGAACGTTCTGATGAAATAAACCAG
TGCTACGATGAATATTMCCCAATTCACCAAGCCTCTCTGCATGATATCAA
GTTTTTAGAGCTTCTCATTCAATGTGGAGCAGAAACAACGGTTCGTACTC
CAACTCAACTCATGACTGCTCTTCATGTTGTGTTGCTCCAAGGAAAAAAG
ACTGCTGAGGATACTTTGCAAACAACGAAGCTTCTTATGGAACATGGACT
CCGTGATTTGATTAACGAGGCGGATTCTCTTGGGAATACTCCGTTGCACG
TGCTTATTGTTCGTTATGCATTAGAAGAAAGACGTTATGGCTAMCACGAT
GATCATCAACCTTGGAATAAATGGGATATGCTGCATATCGTAAGATATTT
GTTACAAAAKGGAGCTCGCCCCTCTATAAATCATACGAGCAACTCTGCAT
TGGCATGTGTACTAAGACATGTAACAGACTGGGAATTTCGTTATGACTTA
CTGCATATGCTTCTACAAGAAGGTGGTGATCCCAATGTGGAAGGGCGTGA
TGGGTCTGTTCCTCTTATGGTTTGCCTCGTTCCCCTCATTAATAAAGACC
CTCTTCATCATTTTAATCACACTATGAAAGTATGTTATTTGAATTGTGTT
CGCATTCTCTGTCAATTCGGAGGTAACCCCAATTGTTCAACACGCTCCAA
CCTCACTCCTTTGCATGTGTTAATGTTTACTGCTAGTGAAAACATCTCCC
TTGCTCGTGAAGATGAGAAATCATCTGGTTTTGAATTTATCAGAAATTTG
TTAACAGTGTTATTACAACACGGCTTGGATCCCAATGTTCGCTTTAGTCA
ACGTTCTAATCATATCCTATATTCACTAATGGATATGGTCAAAAACGCAA
GGTTTCCCAAGGAKCTCTCATATGTGTACGACTTAACCCTTACCTTAATT
CAATTTGGAGCGAATCCGAATGTGAGTGTGGATAGCGAGACCAACAATAA
TAGCACAAAAACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
AACAAGCACACTCGCATTTATCAAGAAAAACCCTACCCGGGTGATTGACA
GCTTTGTAAGACTTCTCATTACAAAAGAACATTTGTGCAGTAAGGATGGG
GATCAGGACCACTTTGCTCGCATTCTCCGACTCTACTACTTTACTATGAA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCCCTCGGTCAAGTCATAAAAGAACTCTACTCAAAACCCAGAAC
TCTTAAGCAAATGACCAGAGTTATTATTTACAATCATATTGGTCAAAAAC
CCGCTTTAAATGCTAATAAGCTCCCCCTTCCTCCAGCTTTAAGAGAATAT
ATTCTCAGTTTTGAACCTTAAAATTTATTCACTACACATATATAAATTCA
TTTATAAATTTAGGTTTATTATGATTATATAACTACATTTAAGTATAAGC
ATATATACCACATAAAAGTCTTCTTTTTTTTTTATATATCAAATGTTGTA
TGTTAATGGTATGCCTTTAAAAAAAATCTAAAGAAAAAAACAAACAAGCC
CCAAAACAGACAGATACTAAAAGTGTTAATGATTATAATAATGGATGTGT
TAAAGAAAATTATGTTAATTAATTATTAATAAACTATTAATGCTGATGTC
AGATATCATACTATACAATACATTCTTTTTCTTATTAAAAAAAAATTACT
TGTTCATAAAATGAATGATTTATTAACAAATTTTTTGTACAGTTGCTGCA
CAAAGAGAGGAGAGGTTTTATACTTTGACTGTTGCCTTATATGCTATATT
TATCTTCTTGTACACGATGTGCATGTTTTACTTAAAATATAAGGTGTGTG
TTGTGTTGTATATTCTGTTGAGGAGTTGTGTTAAATCAGTTGACACACGG
GACTTACACAGCTAAAGATGATTTATATTAATATTTATATAGTAGAGTGT
TTTGWTTTCTGGATTCTATTGAGTAGTAAACGTGTTTGGAGGGGAGCCAT
TGCATTTGTATAAACTGTATACTGCATATTTTGTAAACTACACTTTCCTT
AAGCCACTACCTGAAAAGGTATACCGATCATAAATATATTTGTAAATACA
GACTCTGTTCCCAATGTAATACTTGAGGAATGCATTTGCGTCTGACTGTA
TTTTCTATCTCTCATAACACTTTACTTCCTCTTTTACAGAATGATACCAA
ATTTGCCCCTAAGGCTATACCCTCTATTTGAAATATGTGATGCTGCTTCG
GTGAGTTTAAAACTTAAACGAGAGCATGGACATCGGGTAAATATCTTTGC
ATTATGGAGTGCTACAATATTTAATTGTCATGCTGGAAATTTATTGACTC
ATATATTGTTAGGTTTGAATCGTTGTTTTGGGTTATTTTAAAGACAGAAT
TTTCTTACTTACTTTATAGGGAAGCCTACAATCAATGCATTTAGTAACGT
CGAATATATTGCTCTTGTCACATTGGTTTTCGTTTCAATCCTTCTCTGTC
CAAAAAATATGATAGATACCTTGCTTCAAGTAACTCCTATTCATGTATTT
TTAATTATGGTGTGCGAAATATTTCGATCGTACAAGATTTTGAAAGGCAA
GTTCTCAAATAAATTAAACAAATACAATATTTATTACTTGTCTGTTTGAT
ATTTAATTAATTACTATAAACTAATATTTAAATTAATACCTTCCTATTGA
ATTTGAATAAAACTTTCTTTTAATTAAATGCATGTATCTGGATATTGTCA
GGAACGATATTTTATATTTTTTTCAGGGATCAATGAAGGCCAAAAAGAAT
ATCCAGGGACTTTATGGCCCAGCATAATTATTGGATCTATTCGGGGGAAC
GGCTCTGGATGGATGAAACCCGTGCGTTCCATTATTTTGAGTGACCCATC
TTCTTTTTTTAAGGGTGAATGGTTTGCACCGAGTCGAGCCTCCCAAATTG
CAATTGTATCTGCTGTATTACTAACCATTTGCAAACAAGATGGGTCCATA
TTTGTGTCATTAGTTGGANTTATTGATATCAGTAGCTTTTACCGATGCGT
TTCCTAATTAAATATGGTTTGAACTTAAGGATGTTGGTAGCCCMCCCTTA
ACTAACAAGGAAATGAAAGTGCATTATAATCTTTTGAAAGTTAAAAAGTC
AATGTGAAGATAATCTTATGAAAGATTTAATTAATTATATTGTTATTGTA
TGCTAAGATAAATTTATTAAATCCCCTGTGAAAAACTCATTATGTGTGTG
TGTGTGTGATGACACTTGAATACTAATATTATAAGCAACTACAATCATTT
ATCTTTTCTAGAAATAATTGTTACATGATGTAGGCTTGAATTGTGATATT
CCTTTAAGCATTTAATTGTATAGCTCATAATGTGTTTTAATTGAAAATTT
GTAGTACCTTATTAACAAAAAATAATGTATCTATATTTTTTTATGGTTCT
AATAATTTTATTTTTTAATAATTATCGTTNTTATAGCTTAAATGTTGAAT
TTAATTCATTTTAATCTTGTAGATAGCTTAC

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