EMLSAT00000002493, EMLSAT00000002493-698340 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000002493
Unique Name	EMLSAT00000002493-698340
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1488	supercontig	LSalAtl2s1488:51569..56174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000002493 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000002493	EMLSAG00000002493-685259	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000011083	EMLSAE00000011083-720011	Lepeophtheirus salmonis	exon
EMLSAE00000011084	EMLSAE00000011084-720012	Lepeophtheirus salmonis	exon
EMLSAE00000011085	EMLSAE00000011085-720013	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto770698	auto770698	Lepeophtheirus salmonis	polypeptide
EMLSAP00000002493	EMLSAP00000002493	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1488:51569..56174+

protein sequence of EMLSAP00000002493

>EMLSAP00000002493 ID=EMLSAP00000002493|Name=EMLSAP00000002493|organism=Lepeophtheirus salmonis|type=polypeptide|length=84bp
MAMTSSELKETIFMIGHNDLPWNIRKFVHNKLDTVNFTHNLKFIEPWSKS
KWSHTDISRMVAGKIGCQAPIYTEAKFDVCSTTS

mRNA from alignment at LSalAtl2s1488:51569..56174+

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000002493-698340 ID=EMLSAT00000002493-698340|Name=EMLSAT00000002493|organism=Lepeophtheirus salmonis|type=mRNA|length=4606bp|location=Sequence derived from alignment at LSalAtl2s1488:51569..56174+ (Lepeophtheirus salmonis)
ATGGCCATGACGTCATCCGAGCTGAAGGAAACTATATTCATGATTGGGTA
TTTTTTTTAAACTTTCGAACGTAATTTCTTGTCTAACTGGGCCAGTAGCA
ATCATTTCGGAAAGAACCCAATATTTTCTACAACTCTACCTAAATTAGAT
TGTACGATATAAAACTGACCTCTTTCAAAAAATATATATCTTCTCTAAAA
TCTAATAATATTAAAAAAAAGGGTGTTTATAATTCAATTCCAAATGAGAA
AAGAATACTTTCATTTTGCTCAGAGGAGTAAAAATGTTTAGCCATTGAAA
TGATTTATTGACCTACTTAAATTAATTTCAAGTTATAACTCACAAAGTGT
CCTTCAGTTTTAATAGTATAGTAGAGACAGCAAAAAAAATAAAAACAAGA
TCTTTTTTTTTTTTGTCACTTAAAAATACAAATCTTTTAAACAAATGTAT
TTTTAAGTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AAACCCTTTAAAGCCTCCATATTGTTCCTTCTCTATGGATTATATATATA
AATATTTATAAGCAAACATTTAGATTACTAAAATTTTGTTTCTTTTTTTC
AGACATAATGATCTTCCATGGAATATTCGGAAATTCGTCCACAATAAATT
AGATACTGTTAATTTCACTCACAATTTGAAGTTTATAGAACCGTGGTCCA
AAAGCAAATGGTCGCATACAGATATTTCTAGAATGGTAGCAGGAAAAATC
GGTTGCCAGGTTTGTTATTCTATTTTTTTAATAATCTTTGAATCATGATT
ATATATTTGGATGAAATTGGATTAAGAAAAGATAAGGATGTTTTAATGTT
ACTTATGCGTTAATATTGTAAAAATCTCTCGGAAACCCGTAATATTTGAA
ATATAGGGTATTCAATAAAAGTTTTGATTGCATAACTAGTTAAATCTGCA
AATAATACAATCACAGGTTGTGCAAAAGTCAATTAAACAATTATATATAA
CTTTTTATACATTTAATATACAATAAGTTTATTAGTATAACTTATTTTAT
GAATAATCAATCTTGAAAATGATCACCATAGGAAACAATGATGCCTCCCA
GGTTGTGAAATTTAATGCCACTGCTTATGATATAGGCCTGTGACATTTTA
TCTCGTTGCTGATTGACAGAGTGACAGATTCTCCAAGCATTGTAAATCTA
GTGGACAATAGATACTTCATATAATCCAGGGGATTAAAATCTCGTGATTG
AGGAGGCCAAGAGTTCTTGTCCCATAATTCATAATTGTATCTCAAATATT
CCCAGACAATCTTGGCCATGTAGGCGGAGGCTTCACAATATTAAAAGACA
AACCCAGATCCCTTGGAGATCTCCCCACCCTATGGAAGCTATATTTGAAC
GCAATGCCTGTTTTTGAGGTCATGACAGTGGTAAACAAGGTTTTTGATTT
TGAATCTTTCTCGTTTTTATCAAGCATCCAATTAAAAAATCTAAACACTT
TCTGGAGTCACTTTGAGGATTTAATTACAACTAATATGATCTATATAAAA
ATTTGTTGAAAATTAATTTGTTTAGGAAATTATCTTCTTTTTCTACTAAG
CCAATAAATTAGCTTTGAGAGGTTAATGAAAAGATAATTAATTTCTTCTT
GGTAGGCTCCAATATATACTGAAGCAAAATTTGATGTTTGTAGCACAACA
TCATAG

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