EMLSAT00000002641, EMLSAT00000002641-698488 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000002641
Unique Name	EMLSAT00000002641-698488
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Title	Gene or target symbol	Sex/Stage	Phenotype	Date
E F49a	ILR frag2	female PreAdult2	-Missing- -Missing-	15.10.2012 - 14:52 26.11.2012 - 00:00
E F49b	ILR frag2 halv dose	female PreAdult2	-Missing- -Missing-	15.10.2012 - 14:52 26.11.2012 - 00:00
N F129	SiRNA	female PreAdult2 Adult	-Missing- -Missing-	09.09.2013 - 13:58
N F128	ILR frag3	female Adult	-Missing- -Missing-	19.01.2015 - 13:00 10.10.2013 - 00:00

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1534	supercontig	LSalAtl2s1534:13768..20494 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000002641 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000002641	EMLSAG00000002641-685407	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000011699	EMLSAE00000011699-720627	Lepeophtheirus salmonis	exon
EMLSAE00000011700	EMLSAE00000011700-720628	Lepeophtheirus salmonis	exon
EMLSAE00000011701	EMLSAE00000011701-720629	Lepeophtheirus salmonis	exon
EMLSAE00000011702	EMLSAE00000011702-720630	Lepeophtheirus salmonis	exon
EMLSAE00000011703	EMLSAE00000011703-720631	Lepeophtheirus salmonis	exon
EMLSAE00000011704	EMLSAE00000011704-720632	Lepeophtheirus salmonis	exon
EMLSAE00000011705	EMLSAE00000011705-720633	Lepeophtheirus salmonis	exon
EMLSAE00000011706	EMLSAE00000011706-720634	Lepeophtheirus salmonis	exon
EMLSAE00000011707	EMLSAE00000011707-720635	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto769110	auto769110	Lepeophtheirus salmonis	polypeptide
EMLSAP00000002641	EMLSAP00000002641	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1534:13768..20494-

protein sequence of EMLSAP00000002641

>EMLSAP00000002641 ID=EMLSAP00000002641|Name=EMLSAP00000002641|organism=Lepeophtheirus salmonis|type=polypeptide|length=1433bp
MCINANWTRIRHWSAPERRLKDSNSSISKNKNGSEQLEGVETFLLLPQKS
YSFLDLRMSESMMNNKNFVSYSIRREQKVRSRERRKYNLSDEEEEXFSFV
TAASSSFSYSSIFLTPNPSSMMVADSTTLDNNNTTFSSFSHFTPKEEADP
LRGASSSYNDTPTLKDDGHPQRVPHLNQQEQQHTPRDYSRKRGFRKTSHF
FFRFYNRRKFKFQWSLSGIANFLLLLLMIIPIQSEICGNTKIKIMGDLQR
DFKALENCTIIEGHLAIYDIAEVEPSALSRKLSFPKLREITDFFIMYNAN
AFESLATLFPNLTVIRGDDLVMNYAFVVIYCNNLYEIGLRSLTHILRGGV
RIEFNTRLCYVHTINWDMIVVGSEGFIHIQRNENRNVCSDYCRDDCPLLK
NHLTRRACWTKATVKEVTFAIPCEEGLTCYQGNDGTRGSIEKCSKECLGG
CYGPSQEECYSCKHFLWQDNSKNYCRTTCPSPFLMFNDWICIDIKECREN
SYIVNEKSITEKSITREMKYRIYNDSCIKGCPLGTQQITNKETRDLTCEK
CEFCPKVCPGGKIRSLDDLHQYKECTHIDGDLSINLIGKSIVDGLESNLG
KIDVSLDFFRSLRHIAGIHYPSQEKYYSLTILENENIQTLFSFGEKPDIR
VLITEQEQYKDENGDLVTGKQLSGKTFIHYNPKLCPQKIVEMIKESQLST
DYDKADISEFTNGDKAICSHFKLNISTSLTVNGLNVSYDNYQKIIFEQNS
TNDIRALLRYEIHYRIVDEATYLKKNLTQFDGRDACGGDYWKIIDKVPSE
PQYESGNLVFLDESVLVSQLQPYTYYALYVATLMIRDIANRHNIQGAQSD
ILYIQTLESKPSKLGKYEIEKLSYSSVKIIWEPPLKPNGIITHYEMNITR
EIMDHNRIMERPYCQENYKIKEDYKDEQSNKDKDPDNLDSKKTVSVLSNL
TKCDCDMCKAPEIQNEYEKSETDDFHDIVLNTIFTSNSISTPSSSNDSGQ
KKSELLRKKRSLFGGGQKLNDLNIDVKKRESFVQNAIVAGSAREYIAEGL
KHFGSYRVTLRACHEDKKNIDPNDRCSDDLTVFLKVSNKPGADDIKGRPI
LVSHNSSSDIVWLSWNPPQDPNELIVNYNIKIESKSKESTGIYCITAYEF
IKNDYRYHLPVPGAYYVSVQAVSVYGFGEWSERTWVTVKGQSSSVVLYVM
VPLVFIFILAAAVALTYFYYKKHDDSEINISSNPRYISQNSVYKADEWEV
PRNSVELLEELGNGCFGMVHKGIFIGPDKISRPCAVKTVKKGATHHETIT
FLIEATVMKSERANRQKEEEENAETPLTYPNGSSSGGSVNVTFAGGYPPS
NNSDSNGGIVTTGTNLSSSSAISNGHLLSSSIPSSEFQELNRASSIFGGS
SGSGSTARLTSKWNKVTTFMRMRNKSGSASGEA

mRNA from alignment at LSalAtl2s1534:13768..20494-

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000002641-698488 ID=EMLSAT00000002641-698488|Name=EMLSAT00000002641|organism=Lepeophtheirus salmonis|type=mRNA|length=6727bp|location=Sequence derived from alignment at LSalAtl2s1534:13768..20494- (Lepeophtheirus salmonis)
TTTCATTACGCAGATTGGAGTACTAGAAGAAGAAGAAAAAGAGCTGAATC
CCCTAAACGCCCTAATTACAGGTTATTCAGACCTTTCTGTTATCATCTAA
ATATTTTCTTTGGATCATATCCACATCATCCAGGGGGACCATGTGCATAA
ATGCAAATTGGACTCGTATACGACACTGGTCTGCCCCTGAAAGACGTTTA
AAAGACAGTAATTCCAGCATTAGCAAGAATAAAAACGGGAGTGAACAGCT
TGAAGGAGTTGAGACTTTCCTGCTTTTACCCCAGAAATCGTATTCCTTTT
TGGATCTACGGATGTCAGAATCCATGATGAACAACAAGAACTTTGTGAGC
TATTCTATTCGGCGTGAACAAAAAGTAAGAAGTAGGGAGCGGAGAAAATA
TAATTTAAGTGACGAGGAGGAAGAGRCCTTCTCCTTCGTCACAGCCGCCT
CCTCCTCTTTTAGTTATTCCTCCATCTTTCTTACTCCCAATCCGTCGTCG
ATGATGGTGGCGGATTCAACAACATTGGACAACAATAACACGACCTTTAG
TTCATTCTCACATTTCACTCCAAAAGAAGAGGCTGATCCACTACGAGGAG
CATCCTCCTCTTATAATGACACACCTACCCTCAAGGATGATGGTCACCCC
CAAAGAGTTCCTCACCTTAACCAACAAGAACAACAACACACACCTAGAGA
TTACTCCAGAAAAAGAGGCTTTCGGAAAACATCTCATTTTTTTTTTAGAT
TCTATAACAGGCGAAAGTTTAAATTTCAATGGTCTCTATCGGGTATTGCG
AATTTCCTACTCCTTCTACTCATGATAATACCTATACAGTCTGAAAGTAA
GCTATCTTCTTTCATAAATACAATTCCTATGCATCTTATTTCCTTCAGCT
TAGAAGGAGTTAACAAATTTTCAAAATGATTTAATTATAGCGTACAAATC
ATTATTATTATTATTGTTTTACTCTATTTGTCTTCTTGCCAATGAACGAA
CGCATTCCTTTTCTATTACATGTATAATCTCTAGAATATATATGTATTAT
GTACTGTGTTAAATATGTAATATCCTTTATTGATGAACATTCTACGTACA
GTACTCATAAATACAATTACATTCAATAATGCGAGAATTTATCTTAGAAC
GCAATTCAATTCAAAAAATATATATAACGAAATGAATAAACATTACCAAT
GATGACATTATTAATTATACTAATTAATTAATAATAGTGTAACTCAAGGG
TATGACGTACAATCTGTACTTATTTAGTTCATATGAATATAACTTATTTA
GTTCATATGAATATAACTTATTTATATTAAACATACTTAAGATATTACTT
ATGAATGATAGACTAGAGGCGGAAGCCAAAAACCAAAAAAGATTTTTAAA
GAAATGAATGAGAAAAACAAGTTGAAGTTGCAATTTTTTTTGTCATTCTT
TGTGTTAATATTTATACAACTAAATTATATTATTCATACATTTGTAAGGT
TTCTTAAATTTGAATATTAAAACTTGAATTAATTTATTAATTTTCTCTTC
CTCTGTTAGTCTGTCTTTAAAAAGTATATAGACAATAATACTATCTTTAA
TTCATAATTATATGTACTTACGCTGCATTTAATTCCAAATATATTAACTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTAATATTTAA
ATAACTTTAATTATTATTTAAAATTGAACTCCATTTTGATCAATAGATAG
ATGTAGTTTACTTGGACAGRWAAAATCATTTCATCTCTAATGATAACTAT
TTCAATTATACTTACAGTTTGTGGAAATACTAAAATTAAAATAATGGGTG
ATCTCCAACGAGATTTTAAGGCCTTAGAAAACTGTACAATTATTGAAGGA
CATTTAGCAATTTATGATATTGCAGAAGTTGAACCGAGTGCCCTTTCTCG
GAAGTTATCATTTCCTAAACTTAGAGAAATCACGGATTTCTTTATTATGT
ATAATGCCAACGCTTTTGAAAGTCTTGCTACACTCTTTCCAAATCTTACT
GTTATTCGAGGAGATGACTTAGTTATGGTAAACAAATTTGAATACAACAT
TCTAAGGAAATATTTACTTTCACTATTTTTTTCCTTCAGAATTATGCTTT
TGTTGTGATTTATTGTAACAATCTGTATGAAATAGGACTACGAAGTCTAA
CACATATTCTTCGTGGAGGTGTCCGTATTGAATTTAACACACGACTCTGC
TATGTTCATACTATTAATTGGGACATGATTGTGGTTGGATCTGAGGGTTT
CATTCATATTCAGGTTTGTATATAAAAATAAGTAAATAAATAAGTTATTA
ACCATTAATTAAATATATTTTTTAAAACAGCGAAATGAGAATCGTAACGT
TTGTTCGGACTATTGTCGTGATGACTGCCCCTTACTTAAAAACCATCTGA
CTCGAAGAGCTTGTTGGACAAAAGCTACTGTCAAAGAGGTAACTTGTATA
TTTGTTATGCAAATAATAATCTTTCTACATATATATATATATATATATAT
TTCAGTTGCCATTCCTTGTGAAGAGGGGTTAACTTGCTATCAAGGAAACG
ATGGGACTCGAGGTTCCATTGAAAAATGTTCAAAGGAATGTCTAGGGGGA
TGTTACGGTCCTTCTCAGGAGGAGTGTTACTCATGTAAACATTTTCTGTG
GCAAGACAACAGTAAAAACTATTGTCGTACGACTTGTCCTTCTCCGTTCC
TTATGTTCAATGATTGGATCTGTATCGACATAAAAGAGTGCCGAGAAAAT
AGTTATATCGTGAATGAAAAGTCCATAACTGAAAAGTCAATTACTAGGGA
AATGAAATATCGCATTTACAATGACTCATGCATCAAGGGTTGTCCATTGG
GAACTCAACAAATCACCAATAAGGAAACTCGTGATTTAACATGTGAAAAG
TGTGAATTTTGCCCTAAAGTCTGTCCTGGAGGTAAAATTCGTTCTTTGGA
CGATCTTCATCAATACAAAGAATGTACCCATATCGATGGAGATCTGAGTA
TTAATCTCATAGGGAAAAGTATTGTTGATGGACTTGAAAGTAACTTAGGA
AAAATCGATGGTCTTGAAACTAATTTGGGAAAAATAGNATATATCTGGAC
GCCTTGAAATTACAAGAACTTTTTCTATAGTGTCTCTCGACTTTTTCAGA
AGTCTTCGTCATATAGCAGGAATACATTATCCTAGCCAAGAAAAATATTA
CTCTCTTACCATTCTTGAAAATGAAAACATTCAGACTCTCTTCTCCTTTG
GTGAAAAGCCGGATATTCGAGTTTTGATCACTGAACAAGAACAATACAAA
GATGAAAATGGAGACCTTGTCACTGGGAAGCAACTTTCTGGAAAAACTTT
CATACATTATAATCCTAAGCTCTGCCCTCAAAAAATTGTAGAAATGATTA
AAGAATCTCAACTTTCTACAGATTATGATAAAGCTGATATATCAGAATTT
ACTAATGGAGATAAAGCTATATGCTCGCATTTTAAGCTCAATATTTCTAC
TAGCCTTACTGTTAATGGACTAAATGTATCTTATGACAATTACCAAAAAA
TTATATTCGAACAAAACTCTACGAACGATATTCGTGCTTTATTACGTTAC
GAAATTCATTACAGGATCGTGGACGAGGCCACGTATTTAAAAAAAAACTT
AACTCAATTTGATGGGCGTGATGCTTGCGGTGGAGACTATTGGAAAATCA
TAGATAAAGTCCCATCAGAACCTCAGTATGAGAGTGGGAATCTTGTGTTT
CTCGATGAGAGTGTCTTAGTTTCCCAGTTACAACCATACACCTATTATGC
TCTTTATGTAGCTACACTAATGATTCGAGACATAGCTAATAGACATAATA
TACAAGGAGCTCAGTCGGACATTCTGTATATACAAACACTTGAGAGTAAA
CCCTCAAAACTAGGAAAGTACGAAATTGAAAAGCTCAGTTATTCTTCTGT
GAAGATTATTTGGGAACCTCCTTTGAAACCAAATGGTATTATTACACATT
ATGAAATGAATATTACTCGTGAAATCATGGATCATAATCGTATAATGGAA
AGACCATACTGTCAGGAAAACTATAAAATTAAAGAAGACTATAAGGATGA
ACAAAGCAACAAGGATAAAGATCCAGATAATCTTGATAGCAAAAAAACTG
TCTCAGTTCTTTCTAATTTAACCAAGTGTGATTGTGACATGTGTAAAGCC
CCAGAAATTCAGAATGAATATGAAAAATCTGAAACGGACGATTTTCATGA
CATAGTTCTTAATACTATATTTACATCTAATTCAATTAGTACGCCCTCCT
CATCAAATGACTCAGGCCAGAAGAAGAGTGAATTACTTCGTAAAAAGCGT
TCTTTATTTGGAGGAGGGCAGAAGCTAAATGATTTGAACATTGATGTGAA
AAAACGTGAATCCTTCGTACAAAATGCGATTGTCGCTGGTTCAGCAAGAG
AATACATTGCAGAGGGATTAAAACATTTTGGCTCATACCGAGTGACTCTT
AGAGCCTGTCACGAGGACAAAAAGAACATTGATCCGAATGACCGATGTTC
TGACGATCTTACGGTCTTTCTCAAAGTATCTAATAAGCCAGGAGCAGATG
ATATTAAAGGAAGGCCAATCCTAGTTTCTCATAATTCATCTTCTGACATA
GTTTGGCTAAGTTGGAATCCTCCTCAGGATCCCAATGAACTTATTGTTAA
TTACAACATAAAAATTGAATCCAAGTCTAAAGAATCTACGGGTATTTATT
GTATTACAGCCTACGAATTTATTAAGAATGATTACCGCTATCATTTACCC
GTCCCTGGAGCATACTATGTTAGTGTTCAAGCAGTTTCTGTTTATGGCTT
TGGAGAGTGGAGTGAAAGAACCTGGGTTACTGTGAAAGGTCAAAGTTCCT
CCGTAGTGCTTTATGTTATGGTGCCTCTCGTGTTTATATTCATCTTAGCT
GCTGCAGTAGCCCTTACTTATTTTTATTATAAAAAACATGATGATAGTGA
AATCAACATTTCTTCAAATCCAAGATATATATCCCAGGTACATACATTAC
AAATATAGTCTTCAATCTTCTTTTGATTGATTCATTTTATAAATAATAAT
TTTCTACTTCAGAATTCCGTGTACAAGGCAGATGAGTGGGAAGTACCTCG
TAATTCTGTCGAGTTATTGGAAGAATTAGGGAATGGATGTTTTGGTATGG
TTCACAAAGGTATTTTTATTGGACCTGACAAAATTTCTCGACCCTGTGCT
GTTAAAACAGTAAAAAAAGGGGCGACTCATCATGAAACTATTACTTTTTT
GATTGAAGCCACTGTTATGAAGTAAGTAGTCACTTTGAATTATTAATTAC
ATATGTAAATACACAATATGTCCTTTCGTCCTTCCCTTCATAGTATTCTA
TTATTCTACATATACTTAATGCTAATTTATTTTCAGAAAATTTGATACAA
CTCATGTTGTTAAATTGCTGGGTGTCGTTTCCGACGGTCAACCTCATATG
GTTATCCTTGAGATGATGGAGAAGGGCGATCTTAGAAAATATCTTATTTC
ACGTAGACCTGAGAATGCTGCAGATGGAATGCCTCCACCGACAGTCAGGG
TAAGAGCTCACTCCTGAATTTGGTAATGAATTATAATTACTTTATTTTTT
ATTCATAGGAAATTTATCAAATGGCCATCGAAATAGCAGATGGGATGGCG
TATATATCAAAGCAACGTGTAGTTCACGGGGATTTAGCAGCAAGGAATTG
TATGATCTCTCATGATCTTGTAGTTAAAATTGGAGATTTTGGTCTTTCTC
ATGATATATACACAAAGGGTTATTTTCGAAAAGGTAAAAGATAACATCAA
ATAAAGTTTAATGAATCGATTATTAGTCTTGACTTGTTTCATATTATTGC
CAATAAGGAGATAAGGGAATGATGCCCGTTAGATGGATGTCTCCTGAAGG
TATTCGTGACGGTGTGTATAGTCCTATGACAGATGTATGGTCTTTTGGAA
TTGTTATCTGGGAAATGGTAACTCTTGGGGAGAACCCCTATCAAGGTTTA
TCCAATGATCAAGTCTACAGATTTATTGTCAACAAAAATATTATGGCAGA
GCCTAAGAACTGCCCTCCGAGCTTGTATGCGCTTATGAAAGACTGTTGGA
GTTATTGTGCTTCACATCGTCCTACTTTTCTTGATCTCTGTCAGCGTCTC
ATTACATATGCCAATCAACGCTTTTCTCAAGAATCATTCTTTTGTTCACC
GGAAGGACAATCTGCCCTGGAAGCTCAAGAACAAGATCGTGCCGTCCATA
GATCTGAAAGAGCTAATCGTCAAAAGGAAGAAGAAGAAAACGCAGAAACT
CCTCTTACGTATCCTAATGGAAGTTCATCTGGAGGGTCAGTTAATGTAAC
ATTTGCTGGAGGTTATCCTCCTTCCAATAACTCAGACTCTAATGGTGGAA
TCGTTACAACTGGAACTAATCTATCATCCTCTTCAGCTATAAGTAATGGA
CATTTACTCTCATCATCCATTCCTTCTAGCGAGTTTCAAGAGCTTAATAG
GGCTTCTTCCATCTTTGGAGGGAGCTCTGGCAGTGGAAGTACGGCCCGAC
TTACTTCTAAATGGAATAAAGTTACAACTTTCATGCGAATGCGAAATAAG
TCCGGTTCTGCATCTGGAGAAGCGTGA

Add to Basket

Search form