EMLSAT00000003030, EMLSAT00000003030-698877 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000003030
Unique NameEMLSAT00000003030-698877
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
C F22 g1751_Tryp1 female
  1. PreAdult2
 -Missing-
-Missing- 		14.08.2012 - 12:54
24.09.2012 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s171supercontigLSalAtl2s171:72691..75166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000003030 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000003030EMLSAG00000003030-685796Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000013276EMLSAE00000013276-722204Lepeophtheirus salmonisexon
EMLSAE00000013277EMLSAE00000013277-722205Lepeophtheirus salmonisexon
EMLSAE00000013278EMLSAE00000013278-722206Lepeophtheirus salmonisexon
EMLSAE00000013279EMLSAE00000013279-722207Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771383auto771383Lepeophtheirus salmonispolypeptide
EMLSAP00000003030EMLSAP00000003030Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000003030

>EMLSAP00000003030 ID=EMLSAP00000003030|Name=EMLSAP00000003030|organism=Lepeophtheirus salmonis|type=polypeptide|length=231bp
MRNDQKEGIFFVKPINCNKEHSWTQRTSLETSTFNLSNLYKYAKKIEIKC
SIESVYVTMRTLVYLAIIASALANPKYPDICGLENNPLVDSKIVGGQEAA
RHQFPWLASIYTFGSCTGSILDESWIITAKHCVKTDGVASVLVGVHSIAN
GADEPYRQNRKSSEIHVSSSGDFALIKLESPLEFNEYVRPVCIPTRADAN
ETFVGESTTITGWGANGYDKVNYPNYTMLKV
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mRNA from alignment at LSalAtl2s171:72691..75166-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000003030-698877 ID=EMLSAT00000003030-698877|Name=EMLSAT00000003030|organism=Lepeophtheirus salmonis|type=mRNA|length=2476bp|location=Sequence derived from alignment at LSalAtl2s171:72691..75166- (Lepeophtheirus salmonis)
ATGAGGAAGTAATATTATCAATGATTGAGATACAAAATTAATTTGCTTTT
TTTACGACTTCAAAAATTGTGACACTTATGTTTTATCTTTATTTATTTAG
TGACCAGAGTTAGTATTCATGATTAACAGGAAGACATCAATTTATTTCGG
TTAAAGTACCTGTGGGAAAGATGCTTAAGTCGTCTGTATATAGCTGAGTC
TTAATTTTTCCCGGTTCTGAACTCATTCCTTTTATTATTTCAGAAGAAGG
TATTTTTTTTGTTAAGCCCATTAACTGCAATAAGGAACACAGTTGGACTC
AAAGGACTTCCTTGGAGACATCCACGTTCAATCTTGTAATTATTTCTTGC
TTGGCAAGTCAACAGAAAAGTGTGACTTTCTTAAGAGTTTTGAGATCATG
TAGACAAACTTGAGGGGAAATTGTAAAAATCTTTTCGATATAGTGCTTTC
AGTATGGGGCCCAGTTCCTCACAAACCCTTTTATAAAATTCAAAAGGCAA
AACAGAGTCACCAGGAGACTTAAAATTACTTTCATAAAACTTGATATTTT
CAATTTTTTTTGTGTGTGATCCTTCAAATTTTTCTCAATGATTACTGTTA
GTATTCAGATGTCTTAGGCTAAGAGTATACCATACTTGGAACAATGATCG
CAACTATTTACCAAAACAATTCTCTCAATTTTTCTCAATGATACATTCTT
AGCACTTACATTTTTCTATGAGGTATCTAGTATACATATATTATAGCTAA
TATTTATCTTCCACATATAGTTCAAGGTCTTCCTTTACTTAAAGTCTTTT
GTAATTGATTATGAATTTATAGTATTTAAATTCAATTTGGATGTAGTAAT
TTATATTAAATAAATATTTTTTCTTATTAAAATGAATTTGAACCGGGTAT
TTTTTAGAAAAAAAGTACTAACATCTTGGAAGGTTACCAACATATACTTT
TTTTAACTGATTGCTCGCACAGATTTTGACAATCTTTACTTTCTTATACA
AGATGCTGCATATTTTCGACATTATTTCAATACAAAAGGAAGCAATTAAT
TATTGATAGACCAATAACACATTGGCTTTAAATATTTGATAATAAATTCC
TTTTTATGATGGAAAATCAATACACATTCATGGAACCATTAATTTGGTAA
CTAGTGTAATGCAACTATGCATTACAAATTACTTCATTTTAAGCCTTAAA
TTAAATGTGGAGGATACATATATGCTTTAATATATGTAGGACGGCGTAAC
TTCTGCAGATTCGGAGTTTCTAGAAGAACCATTCAAATCAACAAGGCCAT
AAAACCAACTATATAATATTTTAGTAATTTTGGACATACACTGAAATTTA
TGAGTAGATAAAGTATCCCAAATTTCAGCGTATACATTTTAAGTCGTTCA
TAGGATATATACCCATTTTGGGACCAAAATTTTCAGTGTAGCTTAAATTT
TAATTAAAGGACGGTATTATTTCTTGTTTATCCAAAAAAGATGACCTCTT
CAAATTTAGTACTTGACTTTTGTAAGCATGATGATTCCAAAAATGAAGTG
AATCTAAATGTATTAATGTGCTAAAAATAATGTTTTGTTTTTTCATGATA
TTTTTTAGGGTTGGATCTCAAAGTTATGTTATTTTTCTTTGGAATTTTTT
TCAATTTTACGTTTGCGTTTAGGTCTGAAATTATCTAATGATGTAAATAG
ATATAAGCAAGAAAACTGAACTGCAGTTGTATTGACTCTTTATTTCTGAT
TATTTTTAGAAGAAATTTACGTCATACAATAAGGTAAAGACTTGCTATTC
ATTTACCTTAAGATAAATTAGATCAATATTTAATTAGTTAAAATCTCCTT
TTATTTATATTAATAGATAATAATGTTTTTATCATTAGTCCAATTTATAT
AAATATGCTAAGAAAATTGAAATCAAATGTTCTATCGAATCAGTTTACGT
AACCATGAGAACATTAGTATACTTGGCTATTATTGCATCTGCTTTGGCTA
ATCCTAAATATCCAGATATTTGTGGATTGGAAAACAACCCTTTAGTGGAT
TCGAAAATCGTTGGAGGACAGGAAGCAGCAAGGCATCAGTTTCCATGGCT
AGCTTCTATATATACCTTTGGTTCTTGTACTGGTTCTATTTTGGATGAAA
GTTGGATCATCACTGCTAAACATTGTGTGAAAACTGATGGTGTTGCCTCA
GTTCTTGTTGGGGTTCATAGCATTGCAAATGGGGCAGATGAACCATATAG
ACAAAACCGAAAGAGTTCCGAAATTCACGTATCATCAAGTGGAGACTTTG
CCTTAATCAAATTGGAGAGCCCCTTGGAATTCAATGAATATGTCAGACCC
GTTTGCATACCAACACGTGCAGATGCTAACGAGACCTTTGTTGGAGAATC
AACGACCATAACAGGATGGGGTGCCAATGGTTATGATAAAGTAAATTATC
CGAATTATACTATGCTAAAGGTGTAA
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