EMLSAT00000003031, EMLSAT00000003031-698878 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000003031
Unique NameEMLSAT00000003031-698878
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s171supercontigLSalAtl2s171:93162..97603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000003031 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000003031EMLSAG00000003031-685797Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000013280EMLSAE00000013280-722208Lepeophtheirus salmonisexon
EMLSAE00000013281EMLSAE00000013281-722209Lepeophtheirus salmonisexon
EMLSAE00000013282EMLSAE00000013282-722210Lepeophtheirus salmonisexon
EMLSAE00000013283EMLSAE00000013283-722211Lepeophtheirus salmonisexon
EMLSAE00000013284EMLSAE00000013284-722212Lepeophtheirus salmonisexon
EMLSAE00000013285EMLSAE00000013285-722213Lepeophtheirus salmonisexon
EMLSAE00000013286EMLSAE00000013286-722214Lepeophtheirus salmonisexon
EMLSAE00000013287EMLSAE00000013287-722215Lepeophtheirus salmonisexon
EMLSAE00000013288EMLSAE00000013288-722216Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771932auto771932Lepeophtheirus salmonispolypeptide
EMLSAP00000003031EMLSAP00000003031Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000003031

>EMLSAP00000003031 ID=EMLSAP00000003031|Name=EMLSAP00000003031|organism=Lepeophtheirus salmonis|type=polypeptide|length=540bp
MKELHRTSSFFTFAILFVTQICILKAWSCDPGWYKNKDGCYSISIELLSW
NRAYDECSLKGGTILGASHLKSFESTFPFQNVSRIHFNVEYSIFFGRFYE
SDKEVTFEESITWKPGYPQDLKNKACTSFDEEGFIVNIDCSMDLLTSVCF
KELSLKEDSTGLIEQERKNNRDAIKSCEPMAPEGATLLIIRNQNQNNFIN
GYTMGKQIWIGLRHLDGNGTYGWPDGSLLKKEDFINWGEGEPSSPSNDKE
ACAENLDMQWNDCSCDHKPTANCDFEDGLSWVEEKXSGMCYTVISREQSW
SNAAESCVNLGDSANLVSIGTPQQDKFIRGRLRTQNRKGTYWIGMKKLED
KIFWSDLSPVSYFNWKTLPENGCSKTSLDDDHWIFDDCETAKYPRDFVWE
DGSSLDGNAFTFWGIGEPNDNDHKENCIEYKFQHRWNDGDCELERAFICQ
VEYSICPASSTVLNQHCLYTDSEPKTCNEAEKICQNTLHHGHLASIHDWG
SITWGVVVDGXNLIVHAIYWSWRNSHFRRQRENAGTGEAT
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mRNA from alignment at LSalAtl2s171:93162..97603+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000003031-698878 ID=EMLSAT00000003031-698878|Name=EMLSAT00000003031|organism=Lepeophtheirus salmonis|type=mRNA|length=4442bp|location=Sequence derived from alignment at LSalAtl2s171:93162..97603+ (Lepeophtheirus salmonis)
AAACGAGTGAGAATGAAGGAACTTCATAGAACATCATCCTTTTTTACGTT
TGCAATACTTTTTGTAACTCAAATTTGTATTCTCAAGGCATGGAGCTGTG
ATCCTGGATGGTATAAGAATAAAGATGGATGCTATAGTATATCCATAGAG
CTGCTATCATGGAATCGTGCATATGACGAGTGCAGTTTAAAAGGAGGAAC
TATTCTGGGCGCCTCTCATCTCAAATCCTTTGAAAGCACTTTTCCCTTCC
AGAATGTATCCAGAATACATTTCAACGTTGAGTACTCAATTTTTTTTGGA
AGGTTTTATGAATCGGATAAGGAAGTTACCTTTGAGGAGAGCATGTAAAG
TCCTAAATTTAAGTCTCCCCTGTGCTTCCTTAAATCTGTTTCTGAGGGAT
TTAATAGGTCAAGGGATAGACTTTAATCTGTTTAACTAAAATTACAAATT
ACAGAACGTGGAAACCTGGATATCCACAAGATTTGAAGAACAAAGCATGC
ACAAGTTTCGATGAAGAGGGATTCATTGTCAATATTGATTGTTCCATGGA
CCTTTTGACAAGTGTTTGTTTTAAAGAGTTGTCATTGAAGGAAGGTAAAG
GATCTCTTGCAGTAATTTCGTTTCTTACATATTATGTCATTACTTCTTTC
CAGATTCAACAGGATTAATTGAGCAGGGTAAGTTCATCACATAAAACCGT
GTTTCCCAACCTTTGTTACCCTTGTGCACGAAAGTGTATCTTCAAGGGCT
CCACAAGATATTATATACATAAAATATAAAATATTTAGTTGATCATATTA
AAAAAAAAAATAGGGCCTTGCAGTGACAAAAAGGTTGGGGATCACTCATT
TAAAAGAACACAAAGACGTCAAATACAACTCTTCTTTCCCCTCTTTTTTT
ACAATAGAGCTATGTCCGAAGGATTTTGTTCGCCATGAGCACAATTGTTA
CTTCTTTTCGGAAGAAAGGAAAAATAATAGGGATGCCATTAAAAGTTGTG
AACCAATGGCTCCTGAGGGGGCCACCCTACTTATAATTCGAAATCAAAAT
CAAAATAATTTTATAAATGGTAATCGAGGTTATTTGAAAAGTATTAGAGT
TGGATCGATTCTTGGACTGAATTTCTTAATGGTATTTTTTAACCTTTCTC
CTCTTTTCAGTGGGGATAAATAAAGAACAACTTACACGTATTTCCCAATA
ACTTTTAAATAGCTAACACTGTGCTTGAAAAAATACATTTCTGTCGTATA
TTTTATATTTTTTCGCTCTCAAAAGAGGGTCCACAAAGAAAGAAAAAATA
CCTATTAGGAATCTCCACTGATCCAACACTAATTTGTATCTATGGACGTG
ATTTTACTTCTTTACGGTCCCTAAATGTTCTAGGGTATACGATGGGTAAA
CAAATATGGATTGGATTGAGACATCTTGATGGGAATGGGACATATGGATG
GCCAGATGGAAGCCTTTTGAAAAAGGAGGATTTCATAAATTGGGGTGAAG
GGGAACCATCATCCCCAAGTAACGACAAAGAAGCATGTGCAGAGAATTTA
GATATGCAATGGAACGATTGCAGTTGTGGTCATACGATACCCTTTGCATG
TCAAGCAGAAGAGTGTAAGAGGATATATGTATAATAATCCACAGGTCTAA
GGTTTTTTGTTTCTTTTCTTACTTTTTAACTAGATCATAAGCCAACTGCT
AATTGCGATTTTGAGGATGGACTCTCATGGGTGGAGGAAAAGAGKAGTGG
GATGTGTTATACAGTGATAAGCCGAGAACAAAGCTGGAGTAATGCCGCTG
AATCGTGTGTAAACCTAGGAGACTCTGCAAACTTAGTCTCCATAGGAACA
CCACAACAAGACAAATTCATCAGAGGGAGACTTAGAACTCAAAATAGAAA
GGGTACGTATTGGATTGGAATGAAAAAACTGGAGGATAAAATTTTTTGGA
GTGACTTATCCCCAGTTTCATATTTCAATTGGAAAACGCTGCCAGAGAAT
GGATGTTCCAAAACCTCCCTTGATGACGATCATTGGATTTTCGATGATTG
TGAAACAGCAAAGTATCCAAGTATTTGTCAACGAAAGGGGAAAAATTACA
TTGAAAAGCCTGAGCCAGTTAAAAGTAAGGATAATAAATTGGGATAAACC
GAGGAACGCAAACTCCTTTTTTCGCTTCCTTTCTTTTAACCAACCAAGGG
CTATAATTTTTATTTTACTATTAATAAAAAGGTTATAAAAAAATAGTCTT
AGGGACATTATTCACCATGTATTTATTGTCAGCTATCAACTTTCTTCCTC
TCCCTCCTGCTATGATCCAGATTAGTTCAATGGTTGGGAATAATTGGCTA
ATTGCAACCATCTTTTTTTTCTGTTTCTTTTGACGAAAATGTTGGGGAAT
ATAATGAAGATAAGGACGGGTATTTTCTCTAAATGAAAGAGATTTAAAAT
AATTGTGTTAAGAATTCATAGATTTTTTTATATTTAGCAACTAGCATAGT
ACCCAGCAATACTCATTACACGATCAGGATTCTATATATGATTATTTTTA
TTTTTGGCTTGCTTAAAATGATCATTTTTTTCTTTCGATATTCGAAAAAT
TAAATTTCTAATAATTTATATATTTTTTAAAAATTCTAATATTAAATTTT
TTGGAAAAACTTTCCTAAATCCACAGCTGTTTATAAAAATTTTGACAACC
TATAGCTGCTCACAAAAAAAAAAAATTTAGGGAAAAAAATTTCAAATATT
AATTTTTTAATGAGAAAACTTTAAAAAATCAATAGCAATTCAAAGAAAAT
TAAATTTTGGGAAAAGAATTTGTACAATAAAATTTTTTGAAAAAAATTTG
AAAAATTAAATTTTGTAAGAAAAAAAAAAACATAAAATTAAGTTAAATTT
CAAATATATAATGTCCCCATCCCACCTTTAGCCCACCCCCTGCGCACCCC
CTAACATTTTTTTATACTTTAATTCTTTCTTTTATTTTGGGACTATCTTA
TAAATTGAAAAATTGACTTATTTCTTGCAAAAAAGGAAGATCAAAAAGTT
TGCAGTTCCATGAAAAAACTAAGAATATCAACTTGTGTCTCAAACTAACT
TAAATATATGTAGATGATTGCCCCGATGCATGGAAAAGATTTGGAATCCA
TTGTTTCTACTTTTCAAAGGAAAAAAAAATTATAAAGATTCTCTGGATTT
TTGTAAGACCTCCGTTGAGGGAGGAAATTTGGCGATAATCAGAAGCTCAC
GTCTAAATGATTTCCTCTATGGTAATAGTATGATTTAAAATTTAACTATT
AATTATAGTTAGTGTAGGAGACCTTTCCTCTTCACTGCCCATTGATTGTT
TTATATGTTCTTTTTTTTTTTTGGGGGGTTAAGTAGATCTTGTTTTGACT
AAAATATAAGTAGTATAACTAAAAATTAGAAATCCAAAAAAACAAAAAAA
ATATTTCAAAAAATAAGTTATTCAATAATTCAATTCATATCAAAATTTCA
AAATTCCTAAAACTGCCACAGATAGAGCCATAGGTCCTTTTTTTGGGTTG
CCCTTAGTTTTGTACTCTCATATTGTTATTTGATAGGGAACATTGAAAGT
GATTCTTATATCGGATTAAATGATATCGAAACTGAAGGGGATTTTGTTTG
GGAAGACGGATCTTCCTTAGATGGGAATGCCTTTACGTTTTGGGGAATTG
GAGAGCCAAATGACAATGACCATAAAGAAAATTGCATTGAATACAAGTTC
CAACATCGATGGAATGATGGTGACTGTGAATTAGAAAGAGCGTTCATTTG
TCAAGTTGAATACAGTAAGTCTGGATACTATTATCAAGTAATTAACATTT
ACATTTTACCCTTACTTCCAAGGTATTTGTCCCGCTTCGTCAACTGTTCT
AAATCAGCATTGTTTATACACAGACTCCGAACCCAAAACCTGCAATGAAG
CTGAAAAGATATGTCAAAATACACTACATCATGGCCATCTTGCGAGTATC
CATGACTGGGGTGTAAATGATTTCCTTAGGTACTCTATTAAAAAATACCA
TCATAACTTCTGGATTGGTCTCAAAAAATCGGCTGGRGKATCTGATTTYG
CCACTTGGTTGGATGGAACAAATATTGACTTTAACAATTATTTGCCGGGT
GAAGAAATTGATGAAGTAGAAGTATGCGAACTAATTGCTAGTGATGGTTT
TTGGTATTCAGAACCCTCGTATGGAAAACATGGCTTCGCTTGTTCTCATA
AACCAAGTTATTGATTTCATTCTCAGTCTCTATGAGTATTACACACAATA
TTTTTTTCTTTGATTTCAGAGTATTACATGGGGTGTCGTAGTGGATGGGK
CAAATCTGATAGTTCATGCTATTTACTGGTCTTGGAGAAACTCTCATTTC
AGAAGGCAGAGGGAAAATGCAGGGACAGGGGAGGCTACTTAG
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