EMLSAT00000003038, EMLSAT00000003038-698885 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000003038
Unique NameEMLSAT00000003038-698885
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1728supercontigLSalAtl2s1728:22097..26590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000003038 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000003038EMLSAG00000003038-685804Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000013317EMLSAE00000013317-722245Lepeophtheirus salmonisexon
EMLSAE00000013318EMLSAE00000013318-722246Lepeophtheirus salmonisexon
EMLSAE00000013319EMLSAE00000013319-722247Lepeophtheirus salmonisexon
EMLSAE00000013320EMLSAE00000013320-722248Lepeophtheirus salmonisexon
EMLSAE00000013321EMLSAE00000013321-722249Lepeophtheirus salmonisexon
EMLSAE00000013322EMLSAE00000013322-722250Lepeophtheirus salmonisexon
EMLSAE00000013323EMLSAE00000013323-722251Lepeophtheirus salmonisexon
EMLSAE00000013324EMLSAE00000013324-722252Lepeophtheirus salmonisexon
EMLSAE00000013325EMLSAE00000013325-722253Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto769551auto769551Lepeophtheirus salmonispolypeptide
EMLSAP00000003038EMLSAP00000003038Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000003038

>EMLSAP00000003038 ID=EMLSAP00000003038|Name=EMLSAP00000003038|organism=Lepeophtheirus salmonis|type=polypeptide|length=526bp
MAXQHYSLRWNNHQXHVLSAFDTLLQNEALVDCTLVCEDTSVRAHKVVLS
ACSPYFQKIFTDNVCKHPIIVLKDIKGWEAQCIVDFMYKGETSVPESQLT
SLIKAAESLKVRGLTSSDQYRRRIYSPICNSNSSITSSTRPEEIQPSNKV
PHMSHPFSSTAVESRSTSPTIANSCPRRKQARPRRRSGDSIGNSSLDLSK
TERKSPTNACEDHLPENLSMKRTDSSPAINLVKTETLLEPLSREHESTDD
IKISYHSFSEKSPKYGQIQEQEARVEALQALNYMASGGGIPTHFALNTLP
SXTTNGLLSHHSVRTSTNNAYNENSEKNGFEFQRISIDRSKMSEEEAFEH
AIEMIQTRQMGFRKAADFFSVSKWKLYKTARKRGIYAEIKKQNQAQQSLS
KVPSNVQHFADMGVYKQLKKKSHLTKEIIFPHLPSDSDTMKAYKSPNNNN
NISTSNNNTDYTTNIIELQKKLFVTHHKHQQKSSETHVNEELLLEEEEEE
EGVLVINHRDCQDEDDDLDFDREDST
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mRNA from alignment at LSalAtl2s1728:22097..26590+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000003038-698885 ID=EMLSAT00000003038-698885|Name=EMLSAT00000003038|organism=Lepeophtheirus salmonis|type=mRNA|length=4494bp|location=Sequence derived from alignment at LSalAtl2s1728:22097..26590+ (Lepeophtheirus salmonis)
CGATCATCGAAAACAAATTTGTTAAATCAAATTTCGTATAAAATTATATA
GTTTTCAGTGCAAAGTATATTGAATAAAGGCTTGATGTAGTCGTGAGATT
TTAAATTATCATTACAATTCATAGGCGAAAAATATTGAATAAGACTTTTT
ATATATTCAGTTTTTTATATTCTTATATATCTCCCATTTTCTACATCTTG
AATAGGAATCTAACTTCTTTGAAAAAGTGAAAACAATTTAGGGTTGTGAA
AAAAAGATAATCTTTTGTCGGTATTAATAAAAACGTTGCAACTTTTTGTT
ATGACATTTTGATAACTTTCTCTATTTTACCTGAGTTTTCGCTGGCGCGT
TCAGGTCTAAAATTTCTTAAAATATTTTAATGATTTACATAAGAACTCAG
TCGTTAATTATTGTTGGAGTAGATTATTCCAACGATCAATTTCAAGAAAA
ATGGTTTAAGTGTTTGTAAACATAGTTAGTTAATTTGTTTTGAATTAAAA
GTGTTCTTAGTTCATTTCTAAATAAGTGGTAAGAGTAAAATGACGTTAAT
TTTTCATAATAGTAGATTAATTGAAACAGCTTACTGAATCAGACTTTATA
AAATAAAAATTTTAATTAATTAATTTGAAAATGTTGCTTCTTTAATTATT
TTTTAGAGTTAATATGGCTTYACAGCATTATAGTCTACGCTGGAACAATC
ATCAAARCCATGTATTAAGTGCATTTGACACACTTTTGCAAAATGAGGCT
TTAGTTGATTGTACATTGGTCTGTGAAGATACATCAGTCAGAGCTCATAA
AGTTGTTCTCAGTGCTTGCAGGTAGATTTTTTGTTACTTTAATTCATTGA
ATGGAACCAATTACTCCAAATATTAACTGATTTATAACGTATTATTTAAT
GGTATAATTTCTATAGACAATGCAATATGTTTTGCTCAAAACTAAATATG
ACTATCATCACATTATAAAATTTCTCTTTTATTTTTTAGTCCCTATTTCC
AAAAAATATTCACTGATAATGTGTGTAAGCACCCAATCATTGTCCTTAAA
GACATAAAAGGATGGGAAGCTCAATGTATAGTCGACTTTATGTATAAAGG
GGAAACTTCGGTACCAGAATCTCAACTCACAAGTCTTATAAAAGCAGCTG
AGTCCTTAAAAGTAAGGGGCCTTACATCGTCTGACCAATATCGTCGTAGG
ATTTATAGCCCAATCTGTAATTCAAATTCGTCTATTACATCATCCACACG
CCCAGAAGAAATTCAACCCTCAAATAAAGTTCCCCACATGTCACATCCTT
TCTCTTCAACAGCAGTCGAATCTCGAAGTACTTCGCCAACAATCGCAAAC
TCCTGCCCTAGAAGAAAACAAGCGAGACCAAGGCGTCGATCAGGTGACTC
AATTGGTAATTCTAGCTTAGATTTATCCAAAACGGAAAGAAAGTCTCCAA
CAAATGCTTGCGAAGATCATTTACCCGAAAATCTTAGTATGAAACGTACA
GATTCGTCYCCAGCCATTAATTTGGTAATAAAATTGAACTTAATCGGTTT
AATATGTAAAATTTAATCATACTTTTTATTATTGTCAGGTGAAAACAGAA
ACCCTCTTAGAACCACTTTCACGTGAACATGAAAGTACAGATGATATTAA
AATATCTTACCATTCATTCTCTGAGAAATCGCCTAAGTATGGGCAAATTC
AAGAGCAAGAAGCACGAGTTGAAGCCTTACAAGTGATATTTTTGAATATA
TTTAAACGTTGTTATATTTAATATTATTTTTTTGGCAGGCACTAAATTAT
ATGGCATCAGGTGGTGGAATMCCTACTCATTTTGCTTTGAATACACTTCC
GTCTMCTACCACTAATGGCCTTCTTAGTCATCATTCAGTGAGAACGAGCA
CCAATAATGCATATAACGGTATTTATTCAATATAATTGAGATAAAATGTT
ATATTCCATAAACATAAAAATAATTTATTTTATTTTTACAATTTAACTTA
ACATTAAAACTTTTTTAAATAATTATTGCTGTACAGAAATTTTTCTTTAT
ACAAACAATTTATAAAAACATTTCATGGTGTATATTATTTAAAATATTCT
AGCTATATTTTCCCTTTTTCCATTTTGTAATTAGTGTCTATTATATTTAC
AGTTTATTAGGTAAATAATTATATTGAATCTAAGCAGATATCTTGATTAT
TTTCATTTGATTATTTGGGAAAATACAAAAACTAAGCTTATGGCTTCTAA
TTGTAAATGTTGTAGTTTTTCTATCATGTTATAGGGTCAATAATTGTTAG
AACATGTATAAAAGACAGGAATACAATTTCTTGTTCATCCCTGGTTNGTC
TATTATATTTACAGTTTATTAGGTAAATAATTATATTGAATCTAAGCAGA
TATCTTGATTATTTTCATTTGATTATTTGGGAAAATACAAAAACTAAGCT
TATGGCTTRTWATTGTAAATGTTGTAGTTTTTCATCATGTTATAGGGTCA
ATAATTGTTAGAACATGTATAAAAGACAGGAATACAATTTCTTGTTCATC
CCTGGTTGTATATATATATATATATTGGACATCTTATTATTTATAAGAAT
ACATTTTGGCTATCATGTAAAAATACTAATGTTTAGTTACACTTTTAATA
AAATATTACTAAGCAATCTTATATAGAGTATCGAATAAAATTTTATGTAG
GATTTTAAAATTAATAGAAAATAATGATAGTCTGGGAGTACTTAAGAGAT
AAATAGTAGTTGGTGTGATTCACCTATTCGGCTAACAACCTGAGGATTTG
TGGCCTTTTTTCTGTTTCTTCTTTGAAGAAAGGTCGCGGGATAAATTAAA
GGTAATAACCATAACAATGGAAAATATCGATGATTATTTTACAAAAACTA
ATATTGATGCTAAATAGTTAAGGTAATGAGTAAGTAGTAAAATTAAATTT
TATGTCTCAACTATAATATAAAAAACCAAGTTATTGTAATAATTTTCTTT
AAATAAAATAAGTTGATTATTTAATTAATATATACAATGTTGAATAAATA
GTAATACACCAACAATAAATATTTTATCAATAATTTGTAATTGAGTCTTG
TATATATTAAAACTCTGAAAATTTACATGCAGTCTAAAAATATAAGGCAA
TAGTGTAAGGTCATATTACTGTTATTCCAGAGAACAGTGAAAAGAACGGA
TTTGAATTTCAACGCATATCGATTGATCGATCTAAAATGTCTGAGGAGGA
AGCCTTTGAACATGCTATTGAAATGATACAAACTCGTCAGATGGGATTTC
GAAAAGCAGCTGATTTTTTTTCTGTATGTAGTATTAAAAAAATATTTTTA
ATCTATATTATTTAATACATAGGTATCTAAATGGAAGCTCTATAAAACTG
CAAGAAAAAGAGGAATTTACGCGGAAATAAAAAAACAAAATCAGGCACAA
GTATAATAAAAACACTTTATAATATCAAAAAATAATTAACTTTCATATAG
CAATCATTATCAAAAGTGCCTTCTAATGTTCAACATTTTGCCGATATGGG
AGTATATAAACAATTAAAGAAAAAATCCCATTTGACAAAAGAAATTATTT
TTCCACATCTTCCTTCTGACTCTGATACTATGAAGGTGAGTGGCACACTT
AGGCTTAATAGAAATATCCCAAAATTCGATACATTTAATCAAAAACTCCA
TTAAAGGATTTAAATTTCATTTTATGTTTTTATTATCTAGAAATATAATT
AGGAAAAATCATTTCTACCGATCAAATCTAAACATTATATGTATTTTTTT
TATTTAATAATTTAAGGCTTATAAATCCCCTAATAATAACAACAACATTT
CAACTTCAAATAACAATACCGATTATACAACCAATATAATCGAACTTCAA
AAAAAATTATTTGTAACACATCATAAACATCAACAAAAAAGTTCCGAAAC
ACATGTAAATGAAGAGTTATTATTGGAAGAAGAGGAGGAAGAGGAAGGAG
TTCTTGTAATTAATCATAGAGACTGTCAAGACGAAGATGACGACTTGGAC
TTCGATAGAGAAGATTCAACCTAATAATTGATCAATATCAATTCTTGGAT
TTATTTTGAAGTATTTTTTGTTATTGTAGATAGATTTACAATAATAGTTG
CTTTTAGTACAAAGAGAAAATATTTTCAGGATTACTGTATGTACTAACCT
ATGACCATTATGTGGTTCAAATTCCATGAAAGTTGCTCATTCATTTTCAT
ATTGGTGTTAATATTTATTTTATATTTATTATTGATTTGTTAAGTTTTTT
TATATAACTAGTTTTTACTATTTGATATTCTTTTAAAAAAAAAATATATA
TATGAAAAATATGCTTAAACTAAAGCATTTGTGCCTCTAATTATTCAGAA
AGAATGTAAGAAAGAACAACAAAAAATAATTTCTACTCAAAATATAAAAA
TTGTTGCCACTAATCACTATTTATCAAATATTATTGTAAACGAA
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