EMLSAT00000003492, EMLSAT00000003492-699339 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003492
Unique Name	EMLSAT00000003492-699339
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s190	supercontig	LSalAtl2s190:411470..416644 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003492 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003492	EMLSAG00000003492-686258	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000015178	EMLSAE00000015178-724106	Lepeophtheirus salmonis	exon
EMLSAE00000015179	EMLSAE00000015179-724107	Lepeophtheirus salmonis	exon
EMLSAE00000015180	EMLSAE00000015180-724108	Lepeophtheirus salmonis	exon
EMLSAE00000015181	EMLSAE00000015181-724109	Lepeophtheirus salmonis	exon
EMLSAE00000015182	EMLSAE00000015182-724110	Lepeophtheirus salmonis	exon
EMLSAE00000015183	EMLSAE00000015183-724111	Lepeophtheirus salmonis	exon
EMLSAE00000015184	EMLSAE00000015184-724112	Lepeophtheirus salmonis	exon
EMLSAE00000015185	EMLSAE00000015185-724113	Lepeophtheirus salmonis	exon
EMLSAE00000015186	EMLSAE00000015186-724114	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto777398	auto777398	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003492	EMLSAP00000003492	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s190:411470..416644-

protein sequence of EMLSAP00000003492

>EMLSAP00000003492 ID=EMLSAP00000003492|Name=EMLSAP00000003492|organism=Lepeophtheirus salmonis|type=polypeptide|length=1030bp
MSISTMEANHAFTAVDLDAVLDEFEFHEGEAERQCETSKKKGNGNISLKE
SSSGIFSPTADEENEDQIDVGVVGETFWESNAHNLCESQSPVECASSPPK
YDAAYPSDGNGNDRKESDSSPSSSSSEEDEEEGHERDEDNGPACPSSSSS
LDGNQQWTECSPPQEDVRVPDDSGGARPKMTKEDAEEVPLDSPPPYSEID
PMKQEDEGEEIRKLNRPTSLALPPPPLSSSNRTDEVDSRETSSVNPSPSA
VTEDSSVSPAALENPVMGPPGSTPAIPNVSLVPDLLQGLSEEQLVLGKVS
PWWVPDSDALTCMICDIKFTLTKRRHHCRACGKVLCNHCCLDRFNLAYMD
NKEARVCKPCKGILERLKRTEEMNNNESDEQNERGHIAPINVSAVNSSFL
RPKPSNPMEYCSTVPPLQQVAASGGATANRPSVMVPVGVLKRXDNVSSPD
RRVSTESKQVMFSDGIRPGGDLTELDGSPEHRSLNRIPRPSHKSSSRRAG
QSDVARSMLPLEGMPYVSGVGLANPVELVDSFHKGQSIAFSINRNLRVHV
SLRFYTPANNHVWSYRTEGLNSVANDEIVFLLIQKDSTESLPPRDIFDHI
QKLFEQARKGSSVHEMSHSVVLSGTDFLDGSDYGGFLFIRRTFQCLQGLD
LPDPPFLFALLITKTEVPWARVFPLRLMLRLGAESRYYPSPLWSYRNRNS
VYKESGNTIMKILSDFRNFTYSLPIIKGMVVHVEDKVTAVLLPKNRYKLV
QKALQNSXDPVLALGANFSTVADSHYVAVQRMGSETPKNPTSSSDYETQT
INISNRPRKVTGASFIVFNGALKSSSGLTAKSSIVEDGIMVQVGQDKMME
IRKKLYAMEDTEVGCGAIGSSQPDEIVSIRWVEDDRTINAGPIDNSPMDG
IISVRIHSGPDFHGDGHLIRCTEIFFFPSECGEDNVDSADSSKVAEFIAK
SVCQALTPHLKSLRNKNDIGVLGVRITLDPENVGYDAGGKGQPLSSEFMN
SLDNELIPIIHSQSIPRRTKFELIFHILNT

mRNA from alignment at LSalAtl2s190:411470..416644-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003492-699339 ID=EMLSAT00000003492-699339|Name=EMLSAT00000003492|organism=Lepeophtheirus salmonis|type=mRNA|length=5175bp|location=Sequence derived from alignment at LSalAtl2s190:411470..416644- (Lepeophtheirus salmonis)
ATGTCCATATCGACAATGGAGGCGAATCATGCCTTTACTGCTGTGGATTT
GGATGCAGTACTCGATGAATTTGAATTCCATGAAGGAGAAGCTGAAAGAC
AATGTGAGACCTCTAAGAAGAAGGGCAACGGAAATATTTCTCTCAAGGAG
TCATCTTCAGGGATCTTTTCCCCAACTGCGGACGAGGAGAACGAGGATCA
AATTGATGTTGGAGTCGTTGGAGAAACTTTCTGGGAATCAAATGCTCATA
ATGTAAGGGGTTATGACATTAGGATTGGGAGCTGCCCATGGGCCTCTCAT
TAGAACTCTTAATAGTTTGGATTTTTGTAATTGAAGTAAGATTTCCATTT
GTTGATTTAGTTATGCGAGAGCCAGTCGCCCGTGGAGTGTGCCTCTTCTC
CACCCAAGTACGATGCAGCCTATCCATCAGATGGGAACGGAAATGATAGA
AAAGAGTCTGACTCGTCTCCTTCCTCCTCATCTTCGGAGGAAGATGAGGA
GGAAGGACATGAGAGGGATGAAGATAATGGACCAGCATGTCCTTCGTCAT
CAAGTTCCTTAGATGGAAACCAGCAATGGACTGAGTGTTCTCCTCCGCAG
GAAGATGTTCGTGTTCCTGATGATAGTGGAGGYGCAAGACCAAAAATGAC
CAAAGAAGATGCTGAAGAGGTTCCCTTGGATAGTCCTCCTCCCTATAGTG
AAATAGATCCTATGAAACAGGAGGATGAAGGAGAAGAAATTCGAAAATTA
AATCGCCCTACTTCCTTGGCTCTTCCTCCTCCTCCTCTGAGTAGTAGTAA
TCGAACCGATGAAGTGGATTCAAGAGAGACCTCATCCGTAAATCCTTCTC
CTTCAGCAGTCACAGAAGATTCAAGCGTTTCTCCAGCGGCACTTGAAAAT
CCTGTCATGGGACCTCCAGGAAGTACTCCTGCTATTCCGAACGTTTCACT
TGTACCAGATTTATTACAAGGACTCAGTGAGGAGCAGCTAGTTTTAGGTA
AAGTTTCTCCGTGGTGGGTTCCAGATTCAGATGCACTCACTTGCATGATA
TGTGATATAAAGTTTACGTTGACGAAACGACGGCATCATTGTCGTGCTTG
TGGTAAAGTTTTGTGCAATCATTGCTGCTTGGACAGATTCAATCTTGCAT
ACATGGATAATAAGGAAGCTCGTGTTTGCAAACCATGCAAAGGAATACTT
GAACGATTAAAACGAACTGAAGAAATGAACAATAATGAATCAGACGAACA
AAATGAACGAGGTCACATAGCTCCAATTAATGTATCAGCGGTTAATTCAT
CCTTTCTTAGACCTAARCCATCCAATCCAATGGAATATTGTTCTACTGTT
CCACCATTACAACAAGTGGCGGCATCAGGAGGMGCTACAGCTAATCGACC
ATCTGTCATGGTACCAGTAGGRGTCTTAAAGAGGRGGGACAATGTCTCAT
CTCCTGATAGGAGAGTATCAACTGAGTCAAAGCAGGTAATGTTTTCCGAT
GGAATTCGACCAGGAGGGGATTTAACAGAACTTGATGGATCTCCTGAACA
TAGATCTCTCAATCGAATACCTAGGCCGAGTCACAAAAGTAGTTCTCGTC
GTGCTGGGCAGTCAGATGTTGCTCGAAGTATGTTACCTTTAGAGGGAATG
CCTTATGTTTCAGGAGTTGGGTTAGCTAACCCTGTTGAATTAGTAGACTC
ATTCCATAAAGGACAATCGATCGCTTTTTCAATTAATAGGAATCTCAGGG
TTCATGTCAGTCTAAGATTTTGTAAGTACATTTCCAGACTTGTTTTAATA
CATGCTTGGTAATTATACTTATGTGATTATAAATTCATTTCTTACTTTTC
AGATACTCCTGCTAATAACCATGTATGGAGCTATCGCACTGAAGGATTAA
ATTCGGTTGCAAATGATGAAATTGTATTTTTACTCATTCAGAAAGACTCC
ACTGAATCTTTACCTCCTCGTGATATTTTTGATCATATTCAAAAACTCTT
TGAACAAGCTCGTAAAGGTATTTTTTTCAGTTTAAGTAAGTTCTAAGTAT
CTGTGTTTTACAATATTTTCAGGATCTTCCGTTCATGAAATGAGCCATAG
TGTTGTTCTTTCTGGAACTGATTTTTTAGATGGATCTGATTACGGAGGGT
TCTTATTCATTCGTCGTACTTTTCAATGTTTGCAAGGCCTTGATTTGCCG
GATCCTCCATTTTTATTTGCTCTTTTAATTACAAAAACTGAAGTTCCCTG
GGCGAGAGTATTTCCACTACGTTTAATGCTTAGATTAGGGGCTGAATCCC
GATACTATCCTAGTCCATTATGGTCTTATCGAAATAGAAATTCTGTTTAT
AAGGAATCTGGCAATACCATTATGAAGATTTTGAGTGTGAGTAAAATATT
CACAGCACATACTTTGCATCAGCTATGAAATTCCACTTTTTTCTTCACAG
GATTTTAGAAATTTTACATATTCTTTACCTATAATCAAAGGTATGGTTGT
CCACGTAGAAGATAAAGTTACTGCTGTTTTGCTTCCGAAAAATAGGTAAC
GAATTGAGATATAATTAGGGTTAGGCAGTACTGTGAATATTGGGTCATAT
TTTCAAAACCAGCTTGCCTGTCTTTTTTTGGTTGTATTTTAGTCCAATTA
AGCCAATTGTGAAGGGAAAAAAAACTGATTTTTTTTTTGCCGGTTTGCAC
CCTAAAAAACAAACGAGCCATAATTCCCCCTAAAAATTCACCGAGTCACT
TTGTTCCTCAATAAGAACGGCTGMAAATCTCTTAAAAGCTGTTTGATGAC
TATTCCTACTAATTACAAACCAAGGATTCCAAATATAGCATAAGTTTTGT
CCTATCTCTTGTAGATTTAGAAATTTTTGAGAAAATGTTCAACCACAACC
CATTTTTTCACGAATTAACGCTTAGTTTTTGATCTTTTTGRGAAATAATC
ATCCCCCAGCTTAAAAATGCATTACTTGTATGACTGATGTGAGCTAGTTC
TACCTCTAAATATGTTTTTTTGCAGTTATCTAAGCACAAATTGCAAGTAT
TACTGGTCATTAGGCTTAGTAGCTCTTGTGAAAATAACATGTGAATCAGC
GTTACTATGTTGTATATAATATCTAATAATACAAAATAATGTTCATAATA
CTTGTAGAAAATTGAGTTGATCAAGAACTGTTATTTAACTATTTGAAGTG
ATGCCTTCTCAACCATAGTATTGATGGCATTATGATTTCTTAGGGAAAAT
GTCATAAATCTGTTGTTTGAAACATCCCATTCACCATCTACATCACAGTC
CAGAATAGAAGCTGAGTGCAAATCTAGAGTGTCTGGTTTTCTAGGATGTT
TCCATGTCAAATTGTTACCCTTTTTCACTCTTACAAGATGATCTTTTTGG
AATGTGCCATCATGTTCTCACAAAAAGCAATATACCAAGTGTTGCATTCA
CCCTCAGTGATAAGAGTAACATAGTACTTTCCAATTTTAATTTCCATATC
ATCTTCAGCTCCAACTTCTGCCACATTACATTCAAGAGCTACCTCTACAT
CACTGTTTGTTGGTAATAGGGCACTAGAATAAGAAGATTCTTTTCCAGCT
AAAAGTGTACAAAGGTTGACTAATCTCTCTTCATGTTAGTTCTTATTTAC
CTTGAACATAGTTGGATTGTCCAAAACATCAGACTTGTGCGTATCGCAAT
AGTATGTCAATTCATTTCGTACTATCTTCTCTTTCAATTTAGTGAAGCRC
CTCAGCACTAGTTGCAGGCCATKCCATCCATTACAAAGCTGGAGTCATTT
ACATTTCTTTTTCTTGCCCATCTCATTTTTTTCAGCAATCCTGATATTAA
GAAGCTGCTTCTGTTCATTGTACCATTTGTTTTCCATATCATTTAGTACT
TGAACAGCATCATTGAAAATAATGTGGCGCGATGAAAATTTAGGGGAAAT
TATGGTTTGTTTGTTTTTTGGAATGCAAACCGCCAAAAAAAAAAAAAAAA
AATTCACATTTGGCTTAATTGGACTAAAATAGACCCAAAAAAAGACAGGC
AAGCTGGTTTTGAAAATATGACTTAGTACTGCCTACCCCATATATAATTT
TGTACCTCATATATGTAACATCATAATTATAGGTACAAATTGGTTCAAAA
AGCACTTCAGAATAGTAAMGATCCTGTTCTGGCCTTGGGTGCCAATTTCA
GTACTGTAGCTGACTCTCATTATGTCGCTGTCCAACGAATGGGATCTGAA
ACTCCTAAAAATCCTACTAGCAGCAGTGATTATGAGACTCAAACCATAAA
TATTTCCAACAGACCTCGTAAAGGTACATGACTCATTTCTTTTGGTCAAC
AGCATTTAAGATAAACCATCTTTCAATTAATCTAGTAACTGGCGCCAGTT
TCATTGTTTTTAATGGAGCATTGAAAAGTTCATCAGGTTTAACAGCTAAA
TCTAGTATTGTTGAAGATGGCATAATGGTTCAGGTTGGTCAAGATAAAAT
GATGGAAATTCGTAAAAAGTTATATGCCATGGAAGACACTGAGGTCGGTT
GTGGAGCTATTGGGTCGTCCCAACCTGATGAAATTGTTTCTATTCGGTGG
GTCGAGGATGACAGAACCATCAATGCAGGGTATTTATTAAAAAGGATTAA
TAAGCTATAAATTATTATTTTTATTAGTATTAAAAGTCCAATCGACAACT
CTCCCATGGATGGAATCATATCTGTTCGTATTCATTCTGGTCCTGACTTT
CACGGAGATGGTCACTTAATTCGTTGTACAGAAATATTTTTCTTTCCATC
AGAGTGTGGTGAAGATAATGTTGATTCTGCAGATTCGTCTAAAGTAGCAG
AGTTTATTGCCAAGTCTGTATGTCAAGCATTAACTCCACATTTAAAAAGC
TTACGAAACAAGAATGACATAGGAGTACTTGGTGTCAGAATAACACTTGA
TCCTGAGAATGTATTTTTTTTAAATCTTAATTTTTTTTGTAGTGTTATTT
CTAATTATTTGCTTTAAATATTGATTAGGTTGGATATGACGCTGGTGGAA
AGGGACAACCCCTTTCGTCGGAATTTATGAACAGTTTGGATAATGAATTA
ATACCCATCATACATAGTCAGTCTATTCCAAGACGAACAAAATTTGAGTT
AATTTTTCATATATTGAATACTTGA

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