EMLSAT00000004546, EMLSAT00000004546-700393 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000004546
Unique Name	EMLSAT00000004546-700393
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s237	supercontig	LSalAtl2s237:665010..669637 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000004546 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000004546	EMLSAG00000004546-687312	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000019796	EMLSAE00000019796-728724	Lepeophtheirus salmonis	exon
EMLSAE00000019797	EMLSAE00000019797-728725	Lepeophtheirus salmonis	exon
EMLSAE00000019798	EMLSAE00000019798-728726	Lepeophtheirus salmonis	exon
EMLSAE00000019799	EMLSAE00000019799-728727	Lepeophtheirus salmonis	exon
EMLSAE00000019800	EMLSAE00000019800-728728	Lepeophtheirus salmonis	exon
EMLSAE00000019801	EMLSAE00000019801-728729	Lepeophtheirus salmonis	exon
EMLSAE00000019802	EMLSAE00000019802-728730	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto779210	auto779210	Lepeophtheirus salmonis	polypeptide
EMLSAP00000004546	EMLSAP00000004546	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s237:665010..669637-

protein sequence of EMLSAP00000004546

>EMLSAP00000004546 ID=EMLSAP00000004546|Name=EMLSAP00000004546|organism=Lepeophtheirus salmonis|type=polypeptide|length=736bp
MEEKNSLSWVEIEGIPPNYRSHHLRFFFSDFVEGDKFTLCHFLHRKTQSE
FSASNSTNCFSVSASFTSSDLRDEFRIRYHDTYWTLSHGEELLPSKCIIK
IIKENQGVEKKAPGSLMPKGNVGTSTIYFKPLISSCQXPSTIITKLRLNF
PTKNRKYGQVSPFHGSPTFEIDTNTREDNGLEEWDRHESLHDDVSARRVL
SGDPDNVAGTKERTFEDVVEVTWDKGSSGLVFHTDASYWKEVDSDSKEAD
DWDVDMSRYDGCQGDKDSEDYSSMRNYYKRSKAKYRSSQDSVFESKIGVF
EKHTKGFGKKMMRRQGWKDGDGLGSTKNKGIKFETKIVALSENEPYLKVE
LEDTILFPEGGGQNYDTGFIGSHRVVNVFREGRKAIHYVEVSSKENDAPL
VPNDLVRLKVDWDRRFDNMQQHTGQHLLSAVLETKLGLKTKSWWMAENSI
EEVGQSYIELELMDGHKVPTNSDIQVVEQEANQYIRDQLPVSITTHKLGD
PELEKAYSRGLPEDLPKDALIRIVNILEDRNMCCGTHVQNLAHLQIIKTL
QFQKSKKTTEFVLYFIVGKRVERYIDICFNRELQLTNLLKNRPLDHYSLI
EKALTSCKNAKKINSNLLKQLALFEAEKVKNMDPLPKYIIDHRKEGSSEY
IGTFIKELTSDKGLNLFIFLIVGNGESGNPYQLALFGDPQDIKKLGSKIC
EYLDGKGGGSGNRFNAKINSLKEYKKAVALVEEHFK

mRNA from alignment at LSalAtl2s237:665010..669637-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000004546-700393 ID=EMLSAT00000004546-700393|Name=EMLSAT00000004546|organism=Lepeophtheirus salmonis|type=mRNA|length=4628bp|location=Sequence derived from alignment at LSalAtl2s237:665010..669637- (Lepeophtheirus salmonis)
ATGGAGGAGAAGAATAGCTTGTCGTGGGTGGAAATCGAAGGAATCCCGCC
TAATTACCGTTCTCACCATCTTCGTTTCTTCTTTTCTGACTTTGTGGAAG
GAGATAAATTTACTTTGTGTCATTTTCTTCATCGAAAAACTCAAAGTGAA
TTTAGTGCGAGTAATTCAACTAACTGTTTCTCTGTCTCTGCAAGTTTTAC
TTCTTCCGATTTGAGAGATGAATTTAGAATTCGCTATCATGATACGTATT
GGACTCTCTCACACGGAGAGGAACTCCTTCCTTCTAAATGTATTATCAAA
ATCATCAAAGAAAATCAAGGTGTCGAGAAAAAAGCTCCTGGATCCCTTAT
GCCCAAAGGAAATGTTGGGACTTCTACTATATACTTCAAACCTCTCATTT
CTTCATGTCAATTMCCCTCCACTATCATTACTAAGCTCAGACTCAATTTC
CCTACCAAAAATCGAAAGTATGGACAAGTGTCTCCTTGTATGTTCTTCTA
TGACCTGGTTTATCTGTTTATATTATATCCTAATGCACTTTTCTTTCTTT
ATAGTCCATGGTTCTCCTACTTTCGAAATAGATACCAATACAAGAGAGGA
TAATGGCCTAGAAGAATGGGATCGTCATGAATCCTTGCATGACGATGTAT
CTGCAAGAAGAGTACTCTCTGGAGATCCGGACAACGTCGCTGGAACGAAG
GAGAGAACCTTTGAAGATGTAGTTGAAGTGACGTGGGATAAAGGGTCTAG
TGGTTTGGTTTTTCATACAGATGCTTCCTATTGGAAAGAAGTAGATAGTG
ATAGTAAAGAGGCTGACGATTGGGATGTTGACATGTCCAGATATGATGGA
TGCCAAGGTGATAAAGATAGTGAGGACTATTCATCCATGCGAAATTACTA
CAAAAGATCCAAAGCAAAATATAGATCCTCGCAAGATTCTGTATTTGAAT
CCAAAATTGGAGTATTTGAAAAACATACAAAAGGCTTTGGGAAAAAGATG
ATGAGAAGACAGGGTTGGAAGGATGGAGATGGACTTGGGTCTACGAAAAA
TAAGGGTATTAAGGTACCTATTAACAATAACGGTCAAATTCATCGTTTTG
GACTTGGATATAAAGAAAGTGCCTTGCTTCCTTTCATGAAATTATCTAAG
CGTAAAAAAACAAATAATTGTATTATTTCGACCGTTTATGATGATCCAGG
CTTGACGGATCCTGTTGAAAAGTATGATGAAAGAAATCCAGATAACTATC
TTAAGCATCGAGACTGACTCGTTTTAAATCATTATTATCGTATGTTAATA
TAAATAGGAATAAGTTAAGACTCATTCTCCTCACAGAATAAAGTTTTGAT
ATCAACGGAACTCAATGGCATTGATTAATTAACGGCATGTCCMGCGTGKA
ATTAAATAGATTCAAACCATAGTGTTACTTTGAATACATCAGTATTCAGC
CACTACTAAGAATTATTCTAAAAGATTCGTTTATTTTTATATGGAGAATT
TCCCTGATTTCGTAGAAGATATGGTTGGATTTACAATCGATTTTTTTTTT
CAAATGATTTGCAGCTTCTAGCACCAAATTATATAAATTATTACTGTTGG
TCTTCTGAACGTTTTTTATAACTTGTACTTTTAATATATATTTGCCCCAA
TGATAGTATCATTATAAATATATTATATTATATTATCATTGATTTTGGGC
TAGCAGAACGAATAAAACACGATCTTTTCACAAAATCCTGGGGGGAAATG
CTGCAAATAAAGATCTCTAGTAATTATACTATTATATATCCGCTATCTTT
GACATGCCCGATGAAAGACATGGAAATTGGGAAGACTTCAATCCTAATAT
ATATTAATTATCAGAACAATAATATTTGTTTTAGAATTCATTTATGATCA
GACCTATATTTGGGTCCACCTTCTCCGAGGTTGTTTATATATTTTTATGA
ATGACGTAATATGATCACGTGATTTCATTACAATAACTTTAGCTGGCATC
TAGATATTGCCGTCTCTGTCCATAAGTTCCGACCTTACTCAATATAAATC
AAAATGTATGCCTGCCAAAGGGACAGCTATCTCAAAGAAGTACACTCAAT
CATTTTTCCTATTAATGATTTCCTTTATTAATTATTANNNTAATGATTTC
CTTTATTAATTATTATGTTTTTTAGTTTGAAACAAAGATCGTGGCTCTTA
GTGAGAATGAGCCATATTTAAAGGTTGAACTTGAAGACACCATTTTGTTT
CCAGAAGGAGGAGGTCAAGTAAGATTGGCTTTATTCCTTGGCCATAAATT
TAATAAAAATAATTTATTTTTAGAATTATGATACGGGGTTTATTGGATCA
CATCGAGTGGTCAATGTTTTTCGAGAAGGACGGAAAGCAATCCATTATGT
TGAGGTTTCATCGAAAGAAAATGACGCTCCACTTGTACCTAATGACCTTG
TTCGTCTCAAAGTGGACTGGGATAGAAGGTTCGATAACATGCAACAACAT
ACAGGTCAACATTTGTTATCTGCCGTCTTAGAAACTAAACTAGGCCTCAA
AACTAAGTCTTGGTGGATGGCGGAAAATTCTATAGAGGAAGTAGGTCAGT
CATACATCGAGTTAGAACTTATGGATGGGCATAAGGTGCCTACTAATAGT
GACATTCAAGTGGTTGAACAGGAGGCCAATCAATATATTCGGGATCAACT
TCCAGTTTCCATTACAACACATAAGCTGGGTGATCCTGAATTAGAGAAAG
CATACAGTCGGGGTCTACCGGAGGATCTTCCAAAGGACGCACTCATACGC
ATAGTGAACATTCTTGAAGATAGAAACATGTGTTGTGGAACTCATGTTCA
AAATTTAGCTCACTTGCAAATCATAAAAACCCTCCAGTTTCAAAAGTCTA
AGAAAACGACTGAATTTGTACTCTATTTTATTGTGGGAAAAAGAGTGGAA
CGCTACATTGATATTTGTTTTAATCGAGAGTTACAATTGACAAATTTACT
CAAAAATAGACCATTGGATCATTACTCCTTAATTGAAAAAGCATTAACGT
CCTGTAAGAACGCCAAGAAAATTAATTCGAATTTATTGAAGCAATTGGCT
CTATTTGAAGCTGAGAAAGTTAAGAATATGGATCCTCTCCCAAAATATAT
AATTGACCACAGGTTATACACTTTTTCCGTTATTATTTAATAGCTTCATT
ATTCAATTTTTACTAAGTACATAGAATACTATACTATTGATATATATGTC
ATGATTATTTAGAAAGTATTTGTATAGGTCAAACTGAATTTGCATTGATT
TAACTATCATATTTATATTGTATAATGAGTGATTTTTTTTAAAACACTGT
AGATATATTATGTATATTTTTAACAGGAAGGAGGGCAGTTCCGAGTACAT
AGGAACTTTTATTAAGGAACTTACGAGTGATAAGGTAATCTATAATCTAA
TATTATTGATAACTATTATATGCTTAAAAATATAAATTAAAATCAATTCA
GTAGTTGGTTTTTTTATCTGATCTACTCTTCTTTTAGCAACTATTTTTTA
TGTTAATTACATATAAATGTTATGTTATAAAAAATAATTGATTATTATAT
GTTATATTATTACTATTATAAGTACACATAGGGTTGTGTCAGTCCTTATT
TAGTAATGAAAACTGCTGTCAAGTTCAGTCTTGGTCGCATTCTAAGACAG
GACTGGACCGAATAAATAAGGATTGACACGACTCTATGTACACATAATAT
TCAAAATTTCGTAATATTTATTATATTTAAATGTCATGTACAAGTTGTCA
CTTATGTAAATAAATTGTACAAGTTGGATTAAAAAAATGGGATGAATAAT
TGAAATGAAAATTACTAATTGACAAGGGTTCTGTGGGAGATTTAAAGTTT
ACATGTGCACAATTATAATATTCGTAAATATGCACAGTAAACAAGTAATT
TTAATCGATCAAAATGAAATCAATGATTAAAATGGCTGGCAATATAATTA
AATAAAGCGTAATGAAGCGCAATAATTGTAGCTTATACAAGTTACAACTA
GTACATAACATATTATAAATCTAATCTTTTTCTATGATTGCTATATGTAT
ATTGTACGTATTCCAGGGTTTGAATCTTTTCATATTTTTAATCGTTGGAA
ATGGTGAGAGTGGGAATCCGTATCAATTGGCACTCTTTGGTGACCCTCAA
GATATTAAAAAATTAGGTTCTAAGTGAGTCTTTCCTTTTACTAATTATAT
ATTAATTTAACGATGTTTTTTTTAAATTTTGTACGCAAGGTCTTGCATGT
TATACATGTCATCTGTTATGTACAAAATGTTCCTATTACTATTACTATGT
ACGTTTATCATCTGTATTAATATTAAATTAATTACAGGCTTGAACTCGTA
GCTCATGAATTGTAAAACATTATATTTTGTAATTATTATTACTCTATGGT
GAAAGTAATTTCTTCTATATTTATCCTCAATAAATATTTTTTTTTCTTTT
TCGTGTTCAGGATTTGCGAATACTTGGATGGAAAAGGAGGGGGATCTGGA
AATCGTTTTAATGCCAAAATAAATTCACTCAAAGAATATAAGAAAGCTGT
AGCCCTTGTAGAAGAGCACTTTAAATAA

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